RNA–Protein interactions for RNA: ENST00000461154.1

SHANK1-205, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 4

Gene SHANK1, Length 558 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-205ENST00000461154 NISCHQ9Y2I1 1504 aa39.07■■■■□ 3.84
SHANK1-205ENST00000461154 CCDC180Q9P1Z9 1646 aa34.73■■■■□ 3.15
SHANK1-205ENST00000461154 ABCC9O60706 1549 aa34.14■■■■□ 3.06
SHANK1-205ENST00000461154 RB1CC1Q8TDY2 1594 aa32.79■■■□□ 2.84
SHANK1-205ENST00000461154 DCAF8L2P0C7V8 631 aa32.79■■■□□ 2.84
SHANK1-205ENST00000461154 NACADO15069 1562 aa32.74■■■□□ 2.83
SHANK1-205ENST00000461154 ZCCHC6Q5VYS8 1495 aaKnown RBP32.57■■■□□ 2.8
SHANK1-205ENST00000461154 MYO15BQ96JP2 1530 aa32.52■■■□□ 2.8
SHANK1-205ENST00000461154 DCAF1Q9Y4B6 1507 aa32.35■■■□□ 2.77
SHANK1-205ENST00000461154 PABPN1Q86U42 306 aaKnown RBP eCLIP31.93■■■□□ 2.7
SHANK1-205ENST00000461154 UNC13AQ9UPW8 1703 aa31.92■■■□□ 2.7
SHANK1-205ENST00000461154 BICRAQ9NZM4 1560 aa31.75■■■□□ 2.67
SHANK1-205ENST00000461154 SCRIBQ14160 1630 aa31.67■■■□□ 2.66
SHANK1-205ENST00000461154 SHROOM4Q9ULL8 1493 aa31.48■■■□□ 2.63
SHANK1-205ENST00000461154 DNAJC5BQ9UF47 199 aa31.46■■■□□ 2.63
SHANK1-205ENST00000461154 EIF4G1Q04637 1599 aaKnown RBP30.95■■■□□ 2.54
SHANK1-205ENST00000461154 CC2D2AQ9P2K1 1620 aa30.84■■■□□ 2.53
SHANK1-205ENST00000461154 CECR2Q9BXF3 1484 aa30.7■■■□□ 2.51
SHANK1-205ENST00000461154 SMARCA4P51532 1647 aa30.3■■■□□ 2.44
SHANK1-205ENST00000461154 BAZ1AQ9NRL2 1556 aaPredicted RBP30.29■■■□□ 2.44
SHANK1-205ENST00000461154 NCAPD3P42695 1498 aa30.24■■■□□ 2.43
SHANK1-205ENST00000461154 ATAD2BQ9ULI0 1458 aa30.21■■■□□ 2.43
SHANK1-205ENST00000461154 SMARCA2P51531 1590 aa30.17■■■□□ 2.42
SHANK1-205ENST00000461154 MROH2BQ7Z745 1585 aa30.08■■■□□ 2.41
SHANK1-205ENST00000461154 HMGXB3Q12766 1538 aa30.03■■■□□ 2.4
SHANK1-205ENST00000461154 PEG3Q9GZU2 1588 aa30.02■■■□□ 2.4
SHANK1-205ENST00000461154 BAZ1BQ9UIG0 1483 aaKnown RBP29.96■■■□□ 2.39
SHANK1-205ENST00000461154 RSF1Q96T23 1441 aaPredicted RBP29.8■■■□□ 2.36
SHANK1-205ENST00000461154 WIZO95785 1651 aa29.77■■■□□ 2.36
SHANK1-205ENST00000461154 TOP2AP11388 1531 aaKnown RBP29.5■■■□□ 2.31
SHANK1-205ENST00000461154 NESP48681 1621 aa29.49■■■□□ 2.31
SHANK1-205ENST00000461154 ERCC6Q03468 1493 aa29.46■■■□□ 2.31
SHANK1-205ENST00000461154 LAMC3Q9Y6N6 1575 aa29.42■■■□□ 2.3
SHANK1-205ENST00000461154 CADPSQ9ULU8 1353 aa29.37■■■□□ 2.29
SHANK1-205ENST00000461154 PDS5BQ9NTI5 1447 aa29.29■■■□□ 2.28
SHANK1-205ENST00000461154 CUX2O14529 1486 aa29.19■■■□□ 2.26
SHANK1-205ENST00000461154 SUPT5HO00267 1087 aaKnown RBP29.18■■■□□ 2.26
SHANK1-205ENST00000461154 CFTRP13569 1480 aa29.14■■■□□ 2.26
SHANK1-205ENST00000461154 CCDC88BA6NC98 1476 aa29.12■■■□□ 2.25
SHANK1-205ENST00000461154 KIF21AQ7Z4S6 1674 aa29.07■■■□□ 2.24
SHANK1-205ENST00000461154 THOC2Q8NI27 1593 aaKnown RBP29.02■■■□□ 2.24
SHANK1-205ENST00000461154 FANCD2Q9BXW9 1451 aa28.99■■■□□ 2.23
SHANK1-205ENST00000461154 CEP164Q9UPV0 1460 aa28.97■■■□□ 2.23
SHANK1-205ENST00000461154 MRC2Q9UBG0 1479 aa28.95■■■□□ 2.22
SHANK1-205ENST00000461154 PRDM2Q13029 1718 aa28.86■■■□□ 2.21
SHANK1-205ENST00000461154 WDR62O43379 1518 aa28.82■■■□□ 2.2
SHANK1-205ENST00000461154 URB2Q14146 1524 aaKnown RBP28.68■■■□□ 2.18
SHANK1-205ENST00000461154 ABCC8Q09428 1581 aa28.55■■■□□ 2.16
SHANK1-205ENST00000461154 TOPBP1Q92547 1522 aa28.5■■■□□ 2.15
SHANK1-205ENST00000461154 DNAJC5Q9H3Z4 198 aa28.48■■■□□ 2.15
SHANK1-205ENST00000461154 DNMBPQ6XZF7 1577 aa28.45■■■□□ 2.14
SHANK1-205ENST00000461154 IFT140Q96RY7 1462 aa28.38■■■□□ 2.13
SHANK1-205ENST00000461154 POLA1P09884 1462 aaPredicted RBP28.25■■■□□ 2.11
SHANK1-205ENST00000461154 CUX1P39880 1505 aa28.23■■■□□ 2.11
SHANK1-205ENST00000461154 ZNF608Q9ULD9 1512 aaPredicted RBP28.22■■■□□ 2.11
SHANK1-205ENST00000461154 SOGA1O94964 1423 aa28.19■■■□□ 2.1
SHANK1-205ENST00000461154 FGD5Q6ZNL6 1462 aa28.17■■■□□ 2.1
SHANK1-205ENST00000461154 TARBP1Q13395 1621 aaKnown RBP28.16■■■□□ 2.1
SHANK1-205ENST00000461154 RAD54L2Q9Y4B4 1467 aa28.14■■■□□ 2.09
SHANK1-205ENST00000461154 WRNQ14191 1432 aaPredicted RBP eCLIP28.12■■■□□ 2.09
SHANK1-205ENST00000461154 AQRO60306 1485 aaKnown RBP eCLIP28.08■■■□□ 2.09
SHANK1-205ENST00000461154 EIF4G3O43432 1585 aaKnown RBP28.06■■■□□ 2.08
SHANK1-205ENST00000461154 TOP2BQ02880 1626 aa28.05■■■□□ 2.08
SHANK1-205ENST00000461154 BIVM-ERCC5R4GMW8 1640 aa28.05■■■□□ 2.08
SHANK1-205ENST00000461154 OSCARQ8IYS5 282 aa28.04■■■□□ 2.08
SHANK1-205ENST00000461154 TDRD9Q8NDG6 1382 aaKnown RBP28.03■■■□□ 2.08
SHANK1-205ENST00000461154 SYNJ1O43426 1573 aa28.02■■■□□ 2.08
SHANK1-205ENST00000461154 WDR97A6NE52 1622 aa27.97■■■□□ 2.07
SHANK1-205ENST00000461154 ABCA10Q8WWZ4 1543 aa27.91■■■□□ 2.06
SHANK1-205ENST00000461154 GRIN2BQ13224 1484 aa27.85■■■□□ 2.05
SHANK1-205ENST00000461154 GAPVD1Q14C86 1478 aa27.83■■■□□ 2.05
SHANK1-205ENST00000461154 FBLN2P98095 1184 aa27.82■■■□□ 2.04
SHANK1-205ENST00000461154 SNAPC4Q5SXM2 1469 aa27.79■■■□□ 2.04
SHANK1-205ENST00000461154 MAGI1Q96QZ7 1491 aaPredicted RBP27.78■■■□□ 2.04
SHANK1-205ENST00000461154 CHMP7Q8WUX9 453 aaPredicted RBP27.75■■■□□ 2.03
SHANK1-205ENST00000461154 ABCA5Q8WWZ7 1642 aa27.74■■■□□ 2.03
SHANK1-205ENST00000461154 CHD1O14646 1710 aa27.7■■■□□ 2.03
SHANK1-205ENST00000461154 PBRM1Q86U86 1689 aa27.68■■■□□ 2.02
SHANK1-205ENST00000461154 SYNJ2O15056 1496 aa27.67■■■□□ 2.02
SHANK1-205ENST00000461154 TRIM41Q8WV44 630 aa27.6■■■□□ 2.01
SHANK1-205ENST00000461154 ERICH3Q5RHP9 1530 aa27.57■■■□□ 2
SHANK1-205ENST00000461154 KIF27Q86VH2 1401 aa27.55■■■□□ 2
SHANK1-205ENST00000461154 FHAD1B1AJZ9 1412 aa27.52■■■□□ 2
SHANK1-205ENST00000461154 ADAMTS12P58397 1594 aa27.49■■□□□ 1.99
SHANK1-205ENST00000461154 ARHGEF11O15085 1522 aa27.47■■□□□ 1.99
SHANK1-205ENST00000461154 GRIN2AQ12879 1464 aa27.47■■□□□ 1.99
SHANK1-205ENST00000461154 RIMBP3CA6NJZ7 1639 aa27.46■■□□□ 1.99
SHANK1-205ENST00000461154 RIMBP3BA6NNM3 1639 aa27.46■■□□□ 1.99
SHANK1-205ENST00000461154 RIMBP3Q9UFD9 1639 aa27.46■■□□□ 1.99
SHANK1-205ENST00000461154 CLASP1Q7Z460 1538 aa27.45■■□□□ 1.98
SHANK1-205ENST00000461154 IGF1RP08069 1367 aa27.4■■□□□ 1.98
SHANK1-205ENST00000461154 NUP160Q12769 1436 aa27.36■■□□□ 1.97
SHANK1-205ENST00000461154 CUL7Q14999 1698 aa27.34■■□□□ 1.97
SHANK1-205ENST00000461154 CHIC1Q5VXU3 224 aa27.34■■□□□ 1.97
SHANK1-205ENST00000461154 CYB5RLQ6IPT4 315 aa27.31■■□□□ 1.96
SHANK1-205ENST00000461154 CEP170Q5SW79 1584 aa27.3■■□□□ 1.96
SHANK1-205ENST00000461154 RUSC2Q8N2Y8 1516 aa27.26■■□□□ 1.96
SHANK1-205ENST00000461154 CARMIL1Q5VZK9 1371 aa27.25■■□□□ 1.95
SHANK1-205ENST00000461154 ARAP1Q96P48 1450 aa27.24■■□□□ 1.95
SHANK1-205ENST00000461154 EEA1Q15075 1411 aa27.16■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms