RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 NISCHQ9Y2I1 1504 aa30.68■■■□□ 2.5
HDAC4-207ENST00000461113 ABCC9O60706 1549 aa28.64■■■□□ 2.18
HDAC4-207ENST00000461113 CCDC180Q9P1Z9 1646 aa27.72■■■□□ 2.03
HDAC4-207ENST00000461113 DNAJC5BQ9UF47 199 aa27.62■■■□□ 2.01
HDAC4-207ENST00000461113 RB1CC1Q8TDY2 1594 aa26.84■■□□□ 1.89
HDAC4-207ENST00000461113 PABPN1Q86U42 306 aaKnown RBP eCLIP26.63■■□□□ 1.85
HDAC4-207ENST00000461113 NACADO15069 1562 aa26.47■■□□□ 1.83
HDAC4-207ENST00000461113 DCAF8L2P0C7V8 631 aa26.38■■□□□ 1.81
HDAC4-207ENST00000461113 UNC13AQ9UPW8 1703 aa26.09■■□□□ 1.77
HDAC4-207ENST00000461113 BICRAQ9NZM4 1560 aa26.09■■□□□ 1.77
HDAC4-207ENST00000461113 DNAJC5Q9H3Z4 198 aa25.88■■□□□ 1.73
HDAC4-207ENST00000461113 CECR2Q9BXF3 1484 aa25.87■■□□□ 1.73
HDAC4-207ENST00000461113 MYO15BQ96JP2 1530 aa25.84■■□□□ 1.73
HDAC4-207ENST00000461113 CC2D2AQ9P2K1 1620 aa25.75■■□□□ 1.71
HDAC4-207ENST00000461113 SHROOM4Q9ULL8 1493 aa25.63■■□□□ 1.69
HDAC4-207ENST00000461113 EIF4G1Q04637 1599 aaKnown RBP25.52■■□□□ 1.68
HDAC4-207ENST00000461113 SCRIBQ14160 1630 aa25.32■■□□□ 1.64
HDAC4-207ENST00000461113 DCAF1Q9Y4B6 1507 aa25.24■■□□□ 1.63
HDAC4-207ENST00000461113 ZCCHC6Q5VYS8 1495 aaKnown RBP25.24■■□□□ 1.63
HDAC4-207ENST00000461113 CUX2O14529 1486 aa24.94■■□□□ 1.58
HDAC4-207ENST00000461113 ERCC6Q03468 1493 aa24.77■■□□□ 1.56
HDAC4-207ENST00000461113 NCAPD3P42695 1498 aa24.51■■□□□ 1.51
HDAC4-207ENST00000461113 TRIM41Q8WV44 630 aa24.47■■□□□ 1.51
HDAC4-207ENST00000461113 NESP48681 1621 aa24.39■■□□□ 1.49
HDAC4-207ENST00000461113 ATAD2BQ9ULI0 1458 aa24.33■■□□□ 1.49
HDAC4-207ENST00000461113 THOC2Q8NI27 1593 aaKnown RBP24.19■■□□□ 1.46
HDAC4-207ENST00000461113 HMGXB3Q12766 1538 aa24.19■■□□□ 1.46
HDAC4-207ENST00000461113 SMARCA2P51531 1590 aa24.16■■□□□ 1.46
HDAC4-207ENST00000461113 SMARCA4P51532 1647 aa24.04■■□□□ 1.44
HDAC4-207ENST00000461113 BAZ1BQ9UIG0 1483 aaKnown RBP24.04■■□□□ 1.44
HDAC4-207ENST00000461113 LAMC3Q9Y6N6 1575 aa23.99■■□□□ 1.43
HDAC4-207ENST00000461113 PDS5BQ9NTI5 1447 aa23.97■■□□□ 1.43
HDAC4-207ENST00000461113 KIF21AQ7Z4S6 1674 aa23.91■■□□□ 1.42
HDAC4-207ENST00000461113 BAZ1AQ9NRL2 1556 aaPredicted RBP23.83■■□□□ 1.41
HDAC4-207ENST00000461113 PEG3Q9GZU2 1588 aa23.8■■□□□ 1.4
HDAC4-207ENST00000461113 MRC2Q9UBG0 1479 aa23.79■■□□□ 1.4
HDAC4-207ENST00000461113 OSCARQ8IYS5 282 aa23.77■■□□□ 1.4
HDAC4-207ENST00000461113 CADPSQ9ULU8 1353 aa23.76■■□□□ 1.39
HDAC4-207ENST00000461113 WDR62O43379 1518 aa23.71■■□□□ 1.39
HDAC4-207ENST00000461113 MROH2BQ7Z745 1585 aa23.65■■□□□ 1.38
HDAC4-207ENST00000461113 CEP164Q9UPV0 1460 aa23.54■■□□□ 1.36
HDAC4-207ENST00000461113 FANCD2Q9BXW9 1451 aa23.47■■□□□ 1.35
HDAC4-207ENST00000461113 RIMBP3CA6NJZ7 1639 aa23.43■■□□□ 1.34
HDAC4-207ENST00000461113 RIMBP3BA6NNM3 1639 aa23.43■■□□□ 1.34
HDAC4-207ENST00000461113 RIMBP3Q9UFD9 1639 aa23.43■■□□□ 1.34
HDAC4-207ENST00000461113 ARHGEF11O15085 1522 aa23.32■■□□□ 1.32
HDAC4-207ENST00000461113 URB2Q14146 1524 aaKnown RBP23.32■■□□□ 1.32
HDAC4-207ENST00000461113 CFTRP13569 1480 aa23.3■■□□□ 1.32
HDAC4-207ENST00000461113 TRHP20396 242 aaPredicted RBP23.29■■□□□ 1.32
HDAC4-207ENST00000461113 CYB5RLQ6IPT4 315 aa23.29■■□□□ 1.32
HDAC4-207ENST00000461113 WIZO95785 1651 aa23.28■■□□□ 1.32
HDAC4-207ENST00000461113 ZNF608Q9ULD9 1512 aaPredicted RBP23.18■■□□□ 1.3
HDAC4-207ENST00000461113 AEBP2Q6ZN18 517 aaPredicted RBP23.15■■□□□ 1.3
HDAC4-207ENST00000461113 IFT140Q96RY7 1462 aa23.11■■□□□ 1.29
HDAC4-207ENST00000461113 ARAP1Q96P48 1450 aa23.05■■□□□ 1.28
HDAC4-207ENST00000461113 FBLN2P98095 1184 aa22.95■■□□□ 1.26
HDAC4-207ENST00000461113 TOP2AP11388 1531 aaKnown RBP22.94■■□□□ 1.26
HDAC4-207ENST00000461113 TOPBP1Q92547 1522 aa22.92■■□□□ 1.26
HDAC4-207ENST00000461113 EIF4G3O43432 1585 aaKnown RBP22.92■■□□□ 1.26
HDAC4-207ENST00000461113 RSF1Q96T23 1441 aaPredicted RBP22.91■■□□□ 1.26
HDAC4-207ENST00000461113 AQRO60306 1485 aaKnown RBP eCLIP22.89■■□□□ 1.25
HDAC4-207ENST00000461113 CHD1O14646 1710 aa22.83■■□□□ 1.25
HDAC4-207ENST00000461113 ABCC8Q09428 1581 aa22.79■■□□□ 1.24
HDAC4-207ENST00000461113 PRDM2Q13029 1718 aa22.77■■□□□ 1.24
HDAC4-207ENST00000461113 CCDC88BA6NC98 1476 aa22.75■■□□□ 1.23
HDAC4-207ENST00000461113 DNMBPQ6XZF7 1577 aa22.73■■□□□ 1.23
HDAC4-207ENST00000461113 TARBP1Q13395 1621 aaKnown RBP22.72■■□□□ 1.23
HDAC4-207ENST00000461113 TDRD9Q8NDG6 1382 aaKnown RBP22.66■■□□□ 1.22
HDAC4-207ENST00000461113 POLA1P09884 1462 aaPredicted RBP22.65■■□□□ 1.22
HDAC4-207ENST00000461113 CLASP1Q7Z460 1538 aa22.63■■□□□ 1.21
HDAC4-207ENST00000461113 CHMP7Q8WUX9 453 aaPredicted RBP22.63■■□□□ 1.21
HDAC4-207ENST00000461113 RAD54L2Q9Y4B4 1467 aa22.62■■□□□ 1.21
HDAC4-207ENST00000461113 SNAPC4Q5SXM2 1469 aa22.6■■□□□ 1.21
HDAC4-207ENST00000461113 SOGA1O94964 1423 aa22.57■■□□□ 1.2
HDAC4-207ENST00000461113 SYNJ1O43426 1573 aa22.54■■□□□ 1.2
HDAC4-207ENST00000461113 GAPVD1Q14C86 1478 aa22.51■■□□□ 1.19
HDAC4-207ENST00000461113 MAGI1Q96QZ7 1491 aaPredicted RBP22.47■■□□□ 1.19
HDAC4-207ENST00000461113 SYNJ2O15056 1496 aa22.43■■□□□ 1.18
HDAC4-207ENST00000461113 GRIN2BQ13224 1484 aa22.42■■□□□ 1.18
HDAC4-207ENST00000461113 FGD5Q6ZNL6 1462 aa22.4■■□□□ 1.18
HDAC4-207ENST00000461113 WDR97A6NE52 1622 aa22.39■■□□□ 1.17
HDAC4-207ENST00000461113 SUPT5HO00267 1087 aaKnown RBP22.34■■□□□ 1.17
HDAC4-207ENST00000461113 ERCC6L2Q5T890 1561 aa22.27■■□□□ 1.16
HDAC4-207ENST00000461113 CUX1P39880 1505 aa22.25■■□□□ 1.15
HDAC4-207ENST00000461113 ILDR1Q86SU0 546 aaPredicted RBP22.24■■□□□ 1.15
HDAC4-207ENST00000461113 PBRM1Q86U86 1689 aa22.15■■□□□ 1.14
HDAC4-207ENST00000461113 CEP170Q5SW79 1584 aa22.13■■□□□ 1.13
HDAC4-207ENST00000461113 GRIN2AQ12879 1464 aa22.12■■□□□ 1.13
HDAC4-207ENST00000461113 KDM4FA0A1W2PPD8 638 aa22.12■■□□□ 1.13
HDAC4-207ENST00000461113 FAM69CQ0P6D2 419 aa22.09■■□□□ 1.13
HDAC4-207ENST00000461113 NUP160Q12769 1436 aa22.08■■□□□ 1.13
HDAC4-207ENST00000461113 ABCA10Q8WWZ4 1543 aa22.08■■□□□ 1.13
HDAC4-207ENST00000461113 ABCA5Q8WWZ7 1642 aa22.06■■□□□ 1.12
HDAC4-207ENST00000461113 KIF13AQ9H1H9 1805 aa22.06■■□□□ 1.12
HDAC4-207ENST00000461113 SHROOM2Q13796 1616 aa21.99■■□□□ 1.11
HDAC4-207ENST00000461113 ABCC10Q5T3U5 1492 aa21.99■■□□□ 1.11
HDAC4-207ENST00000461113 PRG4Q92954 1404 aaPredicted RBP21.98■■□□□ 1.11
HDAC4-207ENST00000461113 ADAMTS12P58397 1594 aa21.97■■□□□ 1.11
HDAC4-207ENST00000461113 NPM1P06748 294 aaKnown RBP eCLIP21.97■■□□□ 1.11
HDAC4-207ENST00000461113 FHAD1B1AJZ9 1412 aa21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms