RNA–Protein interactions for RNA: ENST00000460886.1

COL6A2-207, Transcript of collagen type VI alpha 2 chain, humanhuman

TSL 2

Gene COL6A2, Length 306 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2-207ENST00000460886 NISCHQ9Y2I1 1504 aa23.63■■□□□ 1.37
COL6A2-207ENST00000460886 CCDC180Q9P1Z9 1646 aa21.28■■□□□ 1
COL6A2-207ENST00000460886 ABCC9O60706 1549 aa21.14■□□□□ 0.98
COL6A2-207ENST00000460886 RB1CC1Q8TDY2 1594 aa20.21■□□□□ 0.83
COL6A2-207ENST00000460886 NACADO15069 1562 aa20.08■□□□□ 0.81
COL6A2-207ENST00000460886 MYO15BQ96JP2 1530 aa19.87■□□□□ 0.77
COL6A2-207ENST00000460886 DNAJC5BQ9UF47 199 aa19.87■□□□□ 0.77
COL6A2-207ENST00000460886 UNC13AQ9UPW8 1703 aa19.78■□□□□ 0.76
COL6A2-207ENST00000460886 DCAF8L2P0C7V8 631 aa19.73■□□□□ 0.75
COL6A2-207ENST00000460886 BICRAQ9NZM4 1560 aa19.65■□□□□ 0.74
COL6A2-207ENST00000460886 PABPN1Q86U42 306 aaKnown RBP eCLIP19.63■□□□□ 0.73
COL6A2-207ENST00000460886 DCAF1Q9Y4B6 1507 aa19.6■□□□□ 0.73
COL6A2-207ENST00000460886 ZCCHC6Q5VYS8 1495 aaKnown RBP19.6■□□□□ 0.73
COL6A2-207ENST00000460886 SHROOM4Q9ULL8 1493 aa19.44■□□□□ 0.7
COL6A2-207ENST00000460886 SCRIBQ14160 1630 aa19.26■□□□□ 0.67
COL6A2-207ENST00000460886 CC2D2AQ9P2K1 1620 aa19.16■□□□□ 0.66
COL6A2-207ENST00000460886 EIF4G1Q04637 1599 aaKnown RBP19.14■□□□□ 0.65
COL6A2-207ENST00000460886 CECR2Q9BXF3 1484 aa19.09■□□□□ 0.65
COL6A2-207ENST00000460886 NCAPD3P42695 1498 aa18.54■□□□□ 0.56
COL6A2-207ENST00000460886 ATAD2BQ9ULI0 1458 aa18.45■□□□□ 0.54
COL6A2-207ENST00000460886 SMARCA4P51532 1647 aa18.44■□□□□ 0.54
COL6A2-207ENST00000460886 HMGXB3Q12766 1538 aa18.42■□□□□ 0.54
COL6A2-207ENST00000460886 SMARCA2P51531 1590 aa18.42■□□□□ 0.54
COL6A2-207ENST00000460886 BAZ1AQ9NRL2 1556 aaPredicted RBP18.34■□□□□ 0.53
COL6A2-207ENST00000460886 PEG3Q9GZU2 1588 aa18.33■□□□□ 0.52
COL6A2-207ENST00000460886 CUX2O14529 1486 aa18.33■□□□□ 0.52
COL6A2-207ENST00000460886 DNAJC5Q9H3Z4 198 aa18.29■□□□□ 0.52
COL6A2-207ENST00000460886 ERCC6Q03468 1493 aa18.26■□□□□ 0.51
COL6A2-207ENST00000460886 BAZ1BQ9UIG0 1483 aaKnown RBP18.24■□□□□ 0.51
COL6A2-207ENST00000460886 MROH2BQ7Z745 1585 aa18.18■□□□□ 0.5
COL6A2-207ENST00000460886 NESP48681 1621 aa18.18■□□□□ 0.5
COL6A2-207ENST00000460886 LAMC3Q9Y6N6 1575 aa18.13■□□□□ 0.49
COL6A2-207ENST00000460886 THOC2Q8NI27 1593 aaKnown RBP18.08■□□□□ 0.48
COL6A2-207ENST00000460886 KIF21AQ7Z4S6 1674 aa17.99■□□□□ 0.47
COL6A2-207ENST00000460886 PDS5BQ9NTI5 1447 aa17.98■□□□□ 0.47
COL6A2-207ENST00000460886 WIZO95785 1651 aa17.96■□□□□ 0.47
COL6A2-207ENST00000460886 CADPSQ9ULU8 1353 aa17.93■□□□□ 0.46
COL6A2-207ENST00000460886 WDR62O43379 1518 aa17.82■□□□□ 0.44
COL6A2-207ENST00000460886 MRC2Q9UBG0 1479 aa17.82■□□□□ 0.44
COL6A2-207ENST00000460886 RSF1Q96T23 1441 aaPredicted RBP17.8■□□□□ 0.44
COL6A2-207ENST00000460886 TOP2AP11388 1531 aaKnown RBP17.76■□□□□ 0.43
COL6A2-207ENST00000460886 CFTRP13569 1480 aa17.75■□□□□ 0.43
COL6A2-207ENST00000460886 CEP164Q9UPV0 1460 aa17.74■□□□□ 0.43
COL6A2-207ENST00000460886 FANCD2Q9BXW9 1451 aa17.72■□□□□ 0.43
COL6A2-207ENST00000460886 PRDM2Q13029 1718 aa17.62■□□□□ 0.41
COL6A2-207ENST00000460886 URB2Q14146 1524 aaKnown RBP17.59■□□□□ 0.41
COL6A2-207ENST00000460886 CCDC88BA6NC98 1476 aa17.52■□□□□ 0.4
COL6A2-207ENST00000460886 IFT140Q96RY7 1462 aa17.4■□□□□ 0.38
COL6A2-207ENST00000460886 TOPBP1Q92547 1522 aa17.4■□□□□ 0.38
COL6A2-207ENST00000460886 OSCARQ8IYS5 282 aa17.39■□□□□ 0.37
COL6A2-207ENST00000460886 ABCC8Q09428 1581 aa17.38■□□□□ 0.37
COL6A2-207ENST00000460886 ZNF608Q9ULD9 1512 aaPredicted RBP17.35■□□□□ 0.37
COL6A2-207ENST00000460886 DNMBPQ6XZF7 1577 aa17.35■□□□□ 0.37
COL6A2-207ENST00000460886 TRIM41Q8WV44 630 aa17.34■□□□□ 0.37
COL6A2-207ENST00000460886 EIF4G3O43432 1585 aaKnown RBP17.29■□□□□ 0.36
COL6A2-207ENST00000460886 TARBP1Q13395 1621 aaKnown RBP17.29■□□□□ 0.36
COL6A2-207ENST00000460886 RIMBP3CA6NJZ7 1639 aa17.23■□□□□ 0.35
COL6A2-207ENST00000460886 RIMBP3BA6NNM3 1639 aa17.23■□□□□ 0.35
COL6A2-207ENST00000460886 RIMBP3Q9UFD9 1639 aa17.23■□□□□ 0.35
COL6A2-207ENST00000460886 POLA1P09884 1462 aaPredicted RBP17.22■□□□□ 0.35
COL6A2-207ENST00000460886 ARHGEF11O15085 1522 aa17.17■□□□□ 0.34
COL6A2-207ENST00000460886 AQRO60306 1485 aaKnown RBP eCLIP17.17■□□□□ 0.34
COL6A2-207ENST00000460886 CHD1O14646 1710 aa17.16■□□□□ 0.34
COL6A2-207ENST00000460886 WDR97A6NE52 1622 aa17.15■□□□□ 0.34
COL6A2-207ENST00000460886 RAD54L2Q9Y4B4 1467 aa17.11■□□□□ 0.33
COL6A2-207ENST00000460886 SOGA1O94964 1423 aa17.1■□□□□ 0.33
COL6A2-207ENST00000460886 FGD5Q6ZNL6 1462 aa17.09■□□□□ 0.33
COL6A2-207ENST00000460886 CUX1P39880 1505 aa17.08■□□□□ 0.32
COL6A2-207ENST00000460886 TDRD9Q8NDG6 1382 aaKnown RBP17.04■□□□□ 0.32
COL6A2-207ENST00000460886 SNAPC4Q5SXM2 1469 aa17.01■□□□□ 0.31
COL6A2-207ENST00000460886 MAGI1Q96QZ7 1491 aaPredicted RBP17.01■□□□□ 0.31
COL6A2-207ENST00000460886 ARAP1Q96P48 1450 aa17■□□□□ 0.31
COL6A2-207ENST00000460886 CLASP1Q7Z460 1538 aa17■□□□□ 0.31
COL6A2-207ENST00000460886 SUPT5HO00267 1087 aaKnown RBP16.99■□□□□ 0.31
COL6A2-207ENST00000460886 GRIN2BQ13224 1484 aa16.99■□□□□ 0.31
COL6A2-207ENST00000460886 FBLN2P98095 1184 aa16.96■□□□□ 0.31
COL6A2-207ENST00000460886 SYNJ1O43426 1573 aa16.95■□□□□ 0.3
COL6A2-207ENST00000460886 CYB5RLQ6IPT4 315 aa16.95■□□□□ 0.3
COL6A2-207ENST00000460886 PBRM1Q86U86 1689 aa16.94■□□□□ 0.3
COL6A2-207ENST00000460886 SYNJ2O15056 1496 aa16.94■□□□□ 0.3
COL6A2-207ENST00000460886 ABCA10Q8WWZ4 1543 aa16.93■□□□□ 0.3
COL6A2-207ENST00000460886 ABCA5Q8WWZ7 1642 aa16.92■□□□□ 0.3
COL6A2-207ENST00000460886 GAPVD1Q14C86 1478 aa16.91■□□□□ 0.3
COL6A2-207ENST00000460886 CHMP7Q8WUX9 453 aaPredicted RBP16.89■□□□□ 0.29
COL6A2-207ENST00000460886 BIVM-ERCC5R4GMW8 1640 aa16.85■□□□□ 0.29
COL6A2-207ENST00000460886 TOP2BQ02880 1626 aa16.84■□□□□ 0.29
COL6A2-207ENST00000460886 WRNQ14191 1432 aaPredicted RBP eCLIP16.82■□□□□ 0.28
COL6A2-207ENST00000460886 ADAMTS12P58397 1594 aa16.78■□□□□ 0.28
COL6A2-207ENST00000460886 GRIN2AQ12879 1464 aa16.78■□□□□ 0.28
COL6A2-207ENST00000460886 NUP160Q12769 1436 aa16.74■□□□□ 0.27
COL6A2-207ENST00000460886 ERICH3Q5RHP9 1530 aa16.73■□□□□ 0.27
COL6A2-207ENST00000460886 CEP170Q5SW79 1584 aa16.72■□□□□ 0.27
COL6A2-207ENST00000460886 TRHP20396 242 aaPredicted RBP16.72■□□□□ 0.27
COL6A2-207ENST00000460886 SHROOM2Q13796 1616 aa16.71■□□□□ 0.27
COL6A2-207ENST00000460886 FHAD1B1AJZ9 1412 aa16.7■□□□□ 0.26
COL6A2-207ENST00000460886 ERCC6L2Q5T890 1561 aa16.68■□□□□ 0.26
COL6A2-207ENST00000460886 RUSC2Q8N2Y8 1516 aa16.55■□□□□ 0.24
COL6A2-207ENST00000460886 PRG4Q92954 1404 aaPredicted RBP16.52■□□□□ 0.23
COL6A2-207ENST00000460886 JPH4Q96JJ6 628 aa16.49■□□□□ 0.23
COL6A2-207ENST00000460886 CUL7Q14999 1698 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms