RNA–Protein interactions for RNA: ENST00000460485.1

ERCC3-205, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, humanhuman

TSL 3

Gene ERCC3, Length 815 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3-205ENST00000460485 NISCHQ9Y2I1 1504 aa31.08■■■□□ 2.57
ERCC3-205ENST00000460485 ABCC9O60706 1549 aa28.33■■■□□ 2.13
ERCC3-205ENST00000460485 CCDC180Q9P1Z9 1646 aa27.77■■■□□ 2.04
ERCC3-205ENST00000460485 DNAJC5BQ9UF47 199 aa27.24■■□□□ 1.95
ERCC3-205ENST00000460485 RB1CC1Q8TDY2 1594 aa26.75■■□□□ 1.87
ERCC3-205ENST00000460485 NACADO15069 1562 aa26.46■■□□□ 1.83
ERCC3-205ENST00000460485 PABPN1Q86U42 306 aaKnown RBP eCLIP26.3■■□□□ 1.8
ERCC3-205ENST00000460485 ZCCHC6Q5VYS8 1495 aaKnown RBP26.23■■□□□ 1.79
ERCC3-205ENST00000460485 DCAF8L2P0C7V8 631 aa26.1■■□□□ 1.77
ERCC3-205ENST00000460485 UNC13AQ9UPW8 1703 aa26.08■■□□□ 1.77
ERCC3-205ENST00000460485 BICRAQ9NZM4 1560 aa25.98■■□□□ 1.75
ERCC3-205ENST00000460485 MYO15BQ96JP2 1530 aa25.94■■□□□ 1.74
ERCC3-205ENST00000460485 DCAF1Q9Y4B6 1507 aa25.91■■□□□ 1.74
ERCC3-205ENST00000460485 SHROOM4Q9ULL8 1493 aa25.66■■□□□ 1.7
ERCC3-205ENST00000460485 CECR2Q9BXF3 1484 aa25.65■■□□□ 1.7
ERCC3-205ENST00000460485 CC2D2AQ9P2K1 1620 aa25.59■■□□□ 1.69
ERCC3-205ENST00000460485 DNAJC5Q9H3Z4 198 aa25.58■■□□□ 1.69
ERCC3-205ENST00000460485 EIF4G1Q04637 1599 aaKnown RBP25.39■■□□□ 1.65
ERCC3-205ENST00000460485 SCRIBQ14160 1630 aa25.15■■□□□ 1.62
ERCC3-205ENST00000460485 CUX2O14529 1486 aa24.8■■□□□ 1.56
ERCC3-205ENST00000460485 ERCC6Q03468 1493 aa24.54■■□□□ 1.52
ERCC3-205ENST00000460485 SUPT5HO00267 1087 aaKnown RBP24.48■■□□□ 1.51
ERCC3-205ENST00000460485 NCAPD3P42695 1498 aa24.46■■□□□ 1.51
ERCC3-205ENST00000460485 ATAD2BQ9ULI0 1458 aa24.23■■□□□ 1.47
ERCC3-205ENST00000460485 HMGXB3Q12766 1538 aa24.16■■□□□ 1.46
ERCC3-205ENST00000460485 NESP48681 1621 aa24.15■■□□□ 1.46
ERCC3-205ENST00000460485 RSF1Q96T23 1441 aaPredicted RBP24.15■■□□□ 1.46
ERCC3-205ENST00000460485 SMARCA2P51531 1590 aa24.14■■□□□ 1.45
ERCC3-205ENST00000460485 BAZ1AQ9NRL2 1556 aaPredicted RBP24.06■■□□□ 1.44
ERCC3-205ENST00000460485 THOC2Q8NI27 1593 aaKnown RBP24.05■■□□□ 1.44
ERCC3-205ENST00000460485 TRIM41Q8WV44 630 aa24.04■■□□□ 1.44
ERCC3-205ENST00000460485 SMARCA4P51532 1647 aa23.99■■□□□ 1.43
ERCC3-205ENST00000460485 LAMC3Q9Y6N6 1575 aa23.96■■□□□ 1.43
ERCC3-205ENST00000460485 BAZ1BQ9UIG0 1483 aaKnown RBP23.94■■□□□ 1.42
ERCC3-205ENST00000460485 MROH2BQ7Z745 1585 aa23.91■■□□□ 1.42
ERCC3-205ENST00000460485 PDS5BQ9NTI5 1447 aa23.88■■□□□ 1.41
ERCC3-205ENST00000460485 PEG3Q9GZU2 1588 aa23.85■■□□□ 1.41
ERCC3-205ENST00000460485 KIF21AQ7Z4S6 1674 aa23.8■■□□□ 1.4
ERCC3-205ENST00000460485 WIZO95785 1651 aa23.77■■□□□ 1.4
ERCC3-205ENST00000460485 CHIC1Q5VXU3 224 aa23.77■■□□□ 1.4
ERCC3-205ENST00000460485 TOP2AP11388 1531 aaKnown RBP23.69■■□□□ 1.38
ERCC3-205ENST00000460485 CADPSQ9ULU8 1353 aa23.66■■□□□ 1.38
ERCC3-205ENST00000460485 MRC2Q9UBG0 1479 aa23.65■■□□□ 1.38
ERCC3-205ENST00000460485 WDR62O43379 1518 aa23.62■■□□□ 1.37
ERCC3-205ENST00000460485 OSCARQ8IYS5 282 aa23.6■■□□□ 1.37
ERCC3-205ENST00000460485 CEP164Q9UPV0 1460 aa23.42■■□□□ 1.34
ERCC3-205ENST00000460485 FANCD2Q9BXW9 1451 aa23.34■■□□□ 1.33
ERCC3-205ENST00000460485 CCDC88BA6NC98 1476 aa23.27■■□□□ 1.32
ERCC3-205ENST00000460485 CFTRP13569 1480 aa23.24■■□□□ 1.31
ERCC3-205ENST00000460485 RIMBP3CA6NJZ7 1639 aa23.23■■□□□ 1.31
ERCC3-205ENST00000460485 RIMBP3BA6NNM3 1639 aa23.23■■□□□ 1.31
ERCC3-205ENST00000460485 RIMBP3Q9UFD9 1639 aa23.23■■□□□ 1.31
ERCC3-205ENST00000460485 URB2Q14146 1524 aaKnown RBP23.17■■□□□ 1.3
ERCC3-205ENST00000460485 ARHGEF11O15085 1522 aa23.12■■□□□ 1.29
ERCC3-205ENST00000460485 CYB5RLQ6IPT4 315 aa23.03■■□□□ 1.28
ERCC3-205ENST00000460485 IFT140Q96RY7 1462 aa23.02■■□□□ 1.28
ERCC3-205ENST00000460485 ZNF608Q9ULD9 1512 aaPredicted RBP22.98■■□□□ 1.27
ERCC3-205ENST00000460485 TRHP20396 242 aaPredicted RBP22.95■■□□□ 1.26
ERCC3-205ENST00000460485 PRDM2Q13029 1718 aa22.88■■□□□ 1.25
ERCC3-205ENST00000460485 EEA1Q15075 1411 aa22.87■■□□□ 1.25
ERCC3-205ENST00000460485 ABCC8Q09428 1581 aa22.86■■□□□ 1.25
ERCC3-205ENST00000460485 ARAP1Q96P48 1450 aa22.83■■□□□ 1.25
ERCC3-205ENST00000460485 TOPBP1Q92547 1522 aa22.82■■□□□ 1.24
ERCC3-205ENST00000460485 AEBP2Q6ZN18 517 aaPredicted RBP22.8■■□□□ 1.24
ERCC3-205ENST00000460485 WRNQ14191 1432 aaPredicted RBP eCLIP22.79■■□□□ 1.24
ERCC3-205ENST00000460485 EIF4G3O43432 1585 aaKnown RBP22.79■■□□□ 1.24
ERCC3-205ENST00000460485 CHD1O14646 1710 aa22.74■■□□□ 1.23
ERCC3-205ENST00000460485 AQRO60306 1485 aaKnown RBP eCLIP22.71■■□□□ 1.234e-7■■■■■ 41.8
ERCC3-205ENST00000460485 BIVM-ERCC5R4GMW8 1640 aa22.7■■□□□ 1.22
ERCC3-205ENST00000460485 FBLN2P98095 1184 aa22.68■■□□□ 1.22
ERCC3-205ENST00000460485 TOP2BQ02880 1626 aa22.67■■□□□ 1.22
ERCC3-205ENST00000460485 TARBP1Q13395 1621 aaKnown RBP22.67■■□□□ 1.22
ERCC3-205ENST00000460485 DNMBPQ6XZF7 1577 aa22.67■■□□□ 1.22
ERCC3-205ENST00000460485 LOC105371045A0A1W2PR82 267 aa22.66■■□□□ 1.22
ERCC3-205ENST00000460485 SYNJ1O43426 1573 aa22.66■■□□□ 1.22
ERCC3-205ENST00000460485 POLA1P09884 1462 aaPredicted RBP22.54■■□□□ 1.2
ERCC3-205ENST00000460485 KIF21BO75037 1637 aa22.53■■□□□ 1.2
ERCC3-205ENST00000460485 CLASP1Q7Z460 1538 aa22.52■■□□□ 1.19
ERCC3-205ENST00000460485 FAM9AQ8IZU1 332 aaPredicted RBP22.5■■□□□ 1.19
ERCC3-205ENST00000460485 CHMP7Q8WUX9 453 aaPredicted RBP22.47■■□□□ 1.19
ERCC3-205ENST00000460485 TDRD9Q8NDG6 1382 aaKnown RBP22.47■■□□□ 1.19
ERCC3-205ENST00000460485 SOGA1O94964 1423 aa22.47■■□□□ 1.19
ERCC3-205ENST00000460485 WDR97A6NE52 1622 aa22.46■■□□□ 1.19
ERCC3-205ENST00000460485 GOLGA3Q08378 1498 aa22.45■■□□□ 1.18
ERCC3-205ENST00000460485 RAD54L2Q9Y4B4 1467 aa22.44■■□□□ 1.18
ERCC3-205ENST00000460485 SNAPC4Q5SXM2 1469 aa22.42■■□□□ 1.18
ERCC3-205ENST00000460485 MAGI1Q96QZ7 1491 aaPredicted RBP22.42■■□□□ 1.18
ERCC3-205ENST00000460485 TNIKQ9UKE5 1360 aa22.4■■□□□ 1.18
ERCC3-205ENST00000460485 CSRNP3Q8WYN3 585 aa22.4■■□□□ 1.18
ERCC3-205ENST00000460485 CUX1P39880 1505 aa22.37■■□□□ 1.17
ERCC3-205ENST00000460485 SYNJ2O15056 1496 aa22.34■■□□□ 1.17
ERCC3-205ENST00000460485 GRIN2BQ13224 1484 aa22.34■■□□□ 1.17
ERCC3-205ENST00000460485 GAPVD1Q14C86 1478 aa22.34■■□□□ 1.17
ERCC3-205ENST00000460485 ERICH3Q5RHP9 1530 aa22.31■■□□□ 1.16
ERCC3-205ENST00000460485 RUSC2Q8N2Y8 1516 aa22.29■■□□□ 1.16
ERCC3-205ENST00000460485 FGD5Q6ZNL6 1462 aa22.28■■□□□ 1.16
ERCC3-205ENST00000460485 CEP162Q5TB80 1403 aa22.26■■□□□ 1.15
ERCC3-205ENST00000460485 TRIM26Q12899 539 aaPredicted RBP22.26■■□□□ 1.15
ERCC3-205ENST00000460485 KIF27Q86VH2 1401 aa22.22■■□□□ 1.15
ERCC3-205ENST00000460485 PRXQ9BXM0 1461 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms