RNA–Protein interactions for RNA: ENST00000460264.5

COL5A1-203, Transcript of collagen type V alpha 1 chain, humanhuman

TSL 3

Gene COL5A1, Length 913 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-203ENST00000460264 NISCHQ9Y2I1 1504 aa46.88■■■■■ 5.09
COL5A1-203ENST00000460264 CCDC180Q9P1Z9 1646 aa41.95■■■■■ 4.31
COL5A1-203ENST00000460264 ABCC9O60706 1549 aa41.36■■■■■ 4.21
COL5A1-203ENST00000460264 RB1CC1Q8TDY2 1594 aa39.63■■■■□ 3.94
COL5A1-203ENST00000460264 NACADO15069 1562 aa39.48■■■■□ 3.91
COL5A1-203ENST00000460264 DCAF8L2P0C7V8 631 aa39.2■■■■□ 3.87
COL5A1-203ENST00000460264 MYO15BQ96JP2 1530 aa39.11■■■■□ 3.85
COL5A1-203ENST00000460264 ZCCHC6Q5VYS8 1495 aaKnown RBP38.98■■■■□ 3.83
COL5A1-203ENST00000460264 UNC13AQ9UPW8 1703 aa38.84■■■■□ 3.81
COL5A1-203ENST00000460264 DCAF1Q9Y4B6 1507 aa38.79■■■■□ 3.8
COL5A1-203ENST00000460264 PABPN1Q86U42 306 aaKnown RBP eCLIP38.52■■■■□ 3.76
COL5A1-203ENST00000460264 BICRAQ9NZM4 1560 aa38.49■■■■□ 3.75
COL5A1-203ENST00000460264 DNAJC5BQ9UF47 199 aa38.31■■■■□ 3.72
COL5A1-203ENST00000460264 SCRIBQ14160 1630 aa38.21■■■■□ 3.71
COL5A1-203ENST00000460264 SHROOM4Q9ULL8 1493 aa38.03■■■■□ 3.68
COL5A1-203ENST00000460264 EIF4G1Q04637 1599 aaKnown RBP37.48■■■■□ 3.59
COL5A1-203ENST00000460264 CC2D2AQ9P2K1 1620 aa37.44■■■■□ 3.58
COL5A1-203ENST00000460264 CECR2Q9BXF3 1484 aa37.21■■■■□ 3.55
COL5A1-203ENST00000460264 SMARCA4P51532 1647 aa36.52■■■■□ 3.44
COL5A1-203ENST00000460264 NCAPD3P42695 1498 aa36.4■■■■□ 3.42
COL5A1-203ENST00000460264 BAZ1AQ9NRL2 1556 aaPredicted RBP36.37■■■■□ 3.41
COL5A1-203ENST00000460264 ATAD2BQ9ULI0 1458 aa36.37■■■■□ 3.41
COL5A1-203ENST00000460264 SMARCA2P51531 1590 aa36.32■■■■□ 3.41
COL5A1-203ENST00000460264 HMGXB3Q12766 1538 aa36.24■■■■□ 3.39
COL5A1-203ENST00000460264 PEG3Q9GZU2 1588 aa36.15■■■■□ 3.38
COL5A1-203ENST00000460264 MROH2BQ7Z745 1585 aa36.13■■■■□ 3.37
COL5A1-203ENST00000460264 BAZ1BQ9UIG0 1483 aaKnown RBP36.05■■■■□ 3.36
COL5A1-203ENST00000460264 WIZO95785 1651 aa35.75■■■■□ 3.31
COL5A1-203ENST00000460264 NESP48681 1621 aa35.69■■■■□ 3.3
COL5A1-203ENST00000460264 ERCC6Q03468 1493 aa35.68■■■■□ 3.3
COL5A1-203ENST00000460264 LAMC3Q9Y6N6 1575 aa35.55■■■■□ 3.28
COL5A1-203ENST00000460264 RSF1Q96T23 1441 aaPredicted RBP35.53■■■■□ 3.28
COL5A1-203ENST00000460264 CUX2O14529 1486 aa35.48■■■■□ 3.27
COL5A1-203ENST00000460264 TOP2AP11388 1531 aaKnown RBP35.33■■■■□ 3.25
COL5A1-203ENST00000460264 KIF21AQ7Z4S6 1674 aa35.33■■■■□ 3.25
COL5A1-203ENST00000460264 THOC2Q8NI27 1593 aaKnown RBP35.3■■■■□ 3.24
COL5A1-203ENST00000460264 CADPSQ9ULU8 1353 aa35.29■■■■□ 3.24
COL5A1-203ENST00000460264 PDS5BQ9NTI5 1447 aa35.27■■■■□ 3.24
COL5A1-203ENST00000460264 CFTRP13569 1480 aa35.03■■■■□ 3.2
COL5A1-203ENST00000460264 MRC2Q9UBG0 1479 aa34.97■■■■□ 3.19
COL5A1-203ENST00000460264 CEP164Q9UPV0 1460 aa34.93■■■■□ 3.18
COL5A1-203ENST00000460264 FANCD2Q9BXW9 1451 aa34.92■■■■□ 3.18
COL5A1-203ENST00000460264 WDR62O43379 1518 aa34.91■■■■□ 3.18
COL5A1-203ENST00000460264 CCDC88BA6NC98 1476 aa34.87■■■■□ 3.17
COL5A1-203ENST00000460264 PRDM2Q13029 1718 aa34.86■■■■□ 3.17
COL5A1-203ENST00000460264 DNAJC5Q9H3Z4 198 aa34.83■■■■□ 3.17
COL5A1-203ENST00000460264 URB2Q14146 1524 aaKnown RBP34.63■■■■□ 3.13
COL5A1-203ENST00000460264 TOPBP1Q92547 1522 aa34.34■■■■□ 3.09
COL5A1-203ENST00000460264 ABCC8Q09428 1581 aa34.28■■■■□ 3.08
COL5A1-203ENST00000460264 DNMBPQ6XZF7 1577 aa34.28■■■■□ 3.08
COL5A1-203ENST00000460264 SUPT5HO00267 1087 aaKnown RBP34.22■■■■□ 3.07
COL5A1-203ENST00000460264 IFT140Q96RY7 1462 aa34.2■■■■□ 3.07
COL5A1-203ENST00000460264 ZNF608Q9ULD9 1512 aaPredicted RBP34.1■■■■□ 3.05
COL5A1-203ENST00000460264 TARBP1Q13395 1621 aaKnown RBP34.04■■■■□ 3.04
COL5A1-203ENST00000460264 POLA1P09884 1462 aaPredicted RBP34.01■■■■□ 3.04
COL5A1-203ENST00000460264 EIF4G3O43432 1585 aaKnown RBP34.01■■■■□ 3.03
COL5A1-203ENST00000460264 CUX1P39880 1505 aa33.94■■■■□ 3.02
COL5A1-203ENST00000460264 FGD5Q6ZNL6 1462 aa33.87■■■■□ 3.01
COL5A1-203ENST00000460264 RAD54L2Q9Y4B4 1467 aa33.85■■■■□ 3.01
COL5A1-203ENST00000460264 OSCARQ8IYS5 282 aa33.84■■■■□ 3.01
COL5A1-203ENST00000460264 AQRO60306 1485 aaKnown RBP eCLIP33.82■■■■□ 3.01
COL5A1-203ENST00000460264 SOGA1O94964 1423 aa33.81■■■■□ 3
COL5A1-203ENST00000460264 WDR97A6NE52 1622 aa33.74■■■□□ 2.99
COL5A1-203ENST00000460264 CHD1O14646 1710 aa33.69■■■□□ 2.98
COL5A1-203ENST00000460264 TDRD9Q8NDG6 1382 aaKnown RBP33.68■■■□□ 2.98
COL5A1-203ENST00000460264 BIVM-ERCC5R4GMW8 1640 aa33.57■■■□□ 2.96
COL5A1-203ENST00000460264 TOP2BQ02880 1626 aa33.54■■■□□ 2.96
COL5A1-203ENST00000460264 SNAPC4Q5SXM2 1469 aa33.54■■■□□ 2.96
COL5A1-203ENST00000460264 SYNJ1O43426 1573 aa33.51■■■□□ 2.96
COL5A1-203ENST00000460264 ABCA10Q8WWZ4 1543 aa33.51■■■□□ 2.95
COL5A1-203ENST00000460264 WRNQ14191 1432 aaPredicted RBP eCLIP33.51■■■□□ 2.95
COL5A1-203ENST00000460264 PBRM1Q86U86 1689 aa33.51■■■□□ 2.95
COL5A1-203ENST00000460264 GRIN2BQ13224 1484 aa33.5■■■□□ 2.95
COL5A1-203ENST00000460264 TRIM41Q8WV44 630 aa33.48■■■□□ 2.95
COL5A1-203ENST00000460264 RIMBP3CA6NJZ7 1639 aa33.48■■■□□ 2.95
COL5A1-203ENST00000460264 RIMBP3BA6NNM3 1639 aa33.48■■■□□ 2.95
COL5A1-203ENST00000460264 ABCA5Q8WWZ7 1642 aa33.48■■■□□ 2.95
COL5A1-203ENST00000460264 RIMBP3Q9UFD9 1639 aa33.48■■■□□ 2.95
COL5A1-203ENST00000460264 MAGI1Q96QZ7 1491 aaPredicted RBP33.48■■■□□ 2.95
COL5A1-203ENST00000460264 GAPVD1Q14C86 1478 aa33.45■■■□□ 2.95
COL5A1-203ENST00000460264 FBLN2P98095 1184 aa33.44■■■□□ 2.94
COL5A1-203ENST00000460264 ARHGEF11O15085 1522 aa33.4■■■□□ 2.94
COL5A1-203ENST00000460264 SYNJ2O15056 1496 aa33.35■■■□□ 2.93
COL5A1-203ENST00000460264 CHMP7Q8WUX9 453 aaPredicted RBP33.28■■■□□ 2.92
COL5A1-203ENST00000460264 CLASP1Q7Z460 1538 aa33.28■■■□□ 2.92
COL5A1-203ENST00000460264 ADAMTS12P58397 1594 aa33.19■■■□□ 2.9
COL5A1-203ENST00000460264 ERICH3Q5RHP9 1530 aa33.12■■■□□ 2.89
COL5A1-203ENST00000460264 ARAP1Q96P48 1450 aa33.11■■■□□ 2.89
COL5A1-203ENST00000460264 GRIN2AQ12879 1464 aa33.1■■■□□ 2.89
COL5A1-203ENST00000460264 FHAD1B1AJZ9 1412 aa33.03■■■□□ 2.88
COL5A1-203ENST00000460264 CYB5RLQ6IPT4 315 aa33.01■■■□□ 2.87
COL5A1-203ENST00000460264 CEP170Q5SW79 1584 aa32.98■■■□□ 2.87
COL5A1-203ENST00000460264 NUP160Q12769 1436 aa32.96■■■□□ 2.87
COL5A1-203ENST00000460264 KIF27Q86VH2 1401 aa32.83■■■□□ 2.85
COL5A1-203ENST00000460264 SHROOM2Q13796 1616 aa32.81■■■□□ 2.84
COL5A1-203ENST00000460264 ERCC6L2Q5T890 1561 aa32.78■■■□□ 2.84
COL5A1-203ENST00000460264 CUL7Q14999 1698 aa32.77■■■□□ 2.84
COL5A1-203ENST00000460264 IGF1RP08069 1367 aa32.73■■■□□ 2.83
COL5A1-203ENST00000460264 RUSC2Q8N2Y8 1516 aa32.72■■■□□ 2.83
COL5A1-203ENST00000460264 PRG4Q92954 1404 aaPredicted RBP32.56■■■□□ 2.8
Retrieved 100 of 20,778 RNA–protein pairs in 169 ms