RNA–Protein interactions for RNA: ENST00000460023.5

CCDC78-205, Transcript of coiled-coil domain containing 78, humanhuman

TSL 2

Gene CCDC78, Length 789 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-205ENST00000460023 NISCHQ9Y2I1 1504 aa52.66■■■■■ 6.02
CCDC78-205ENST00000460023 CCDC180Q9P1Z9 1646 aa47.01■■■■■ 5.12
CCDC78-205ENST00000460023 ABCC9O60706 1549 aa46.36■■■■■ 5.01
CCDC78-205ENST00000460023 RB1CC1Q8TDY2 1594 aa44.51■■■■■ 4.72
CCDC78-205ENST00000460023 NACADO15069 1562 aa44.38■■■■■ 4.69
CCDC78-205ENST00000460023 DCAF8L2P0C7V8 631 aa44.24■■■■■ 4.67
CCDC78-205ENST00000460023 MYO15BQ96JP2 1530 aa44.02■■■■■ 4.64
CCDC78-205ENST00000460023 ZCCHC6Q5VYS8 1495 aaKnown RBP43.74■■■■■ 4.59
CCDC78-205ENST00000460023 DCAF1Q9Y4B6 1507 aa43.63■■■■■ 4.57
CCDC78-205ENST00000460023 UNC13AQ9UPW8 1703 aa43.32■■■■■ 4.53
CCDC78-205ENST00000460023 PABPN1Q86U42 306 aaKnown RBP eCLIP43.28■■■■■ 4.52
CCDC78-205ENST00000460023 BICRAQ9NZM4 1560 aa43.05■■■■■ 4.48
CCDC78-205ENST00000460023 DNAJC5BQ9UF47 199 aa42.96■■■■■ 4.47
CCDC78-205ENST00000460023 SHROOM4Q9ULL8 1493 aa42.77■■■■■ 4.44
CCDC78-205ENST00000460023 SCRIBQ14160 1630 aa42.74■■■■■ 4.43
CCDC78-205ENST00000460023 EIF4G1Q04637 1599 aaKnown RBP42.01■■■■■ 4.32
CCDC78-205ENST00000460023 CC2D2AQ9P2K1 1620 aa41.93■■■■■ 4.3
CCDC78-205ENST00000460023 CECR2Q9BXF3 1484 aa41.77■■■■■ 4.28
CCDC78-205ENST00000460023 NCAPD3P42695 1498 aa40.96■■■■■ 4.15
CCDC78-205ENST00000460023 SMARCA4P51532 1647 aa40.91■■■■■ 4.14
CCDC78-205ENST00000460023 BAZ1AQ9NRL2 1556 aaPredicted RBP40.88■■■■■ 4.13
CCDC78-205ENST00000460023 ATAD2BQ9ULI0 1458 aa40.85■■■■■ 4.13
CCDC78-205ENST00000460023 SMARCA2P51531 1590 aa40.82■■■■■ 4.13
CCDC78-205ENST00000460023 HMGXB3Q12766 1538 aa40.67■■■■■ 4.1
CCDC78-205ENST00000460023 PEG3Q9GZU2 1588 aa40.58■■■■■ 4.09
CCDC78-205ENST00000460023 MROH2BQ7Z745 1585 aa40.5■■■■■ 4.07
CCDC78-205ENST00000460023 BAZ1BQ9UIG0 1483 aaKnown RBP40.5■■■■■ 4.07
CCDC78-205ENST00000460023 ERCC6Q03468 1493 aa40.07■■■■■ 4.01
CCDC78-205ENST00000460023 WIZO95785 1651 aa40.02■■■■■ 4
CCDC78-205ENST00000460023 NESP48681 1621 aa39.94■■■■□ 3.99
CCDC78-205ENST00000460023 RSF1Q96T23 1441 aaPredicted RBP39.94■■■■□ 3.98
CCDC78-205ENST00000460023 LAMC3Q9Y6N6 1575 aa39.93■■■■□ 3.98
CCDC78-205ENST00000460023 CUX2O14529 1486 aa39.86■■■■□ 3.97
CCDC78-205ENST00000460023 CADPSQ9ULU8 1353 aa39.75■■■■□ 3.95
CCDC78-205ENST00000460023 PDS5BQ9NTI5 1447 aa39.74■■■■□ 3.95
CCDC78-205ENST00000460023 TOP2AP11388 1531 aaKnown RBP39.64■■■■□ 3.94
CCDC78-205ENST00000460023 THOC2Q8NI27 1593 aaKnown RBP39.45■■■■□ 3.91
CCDC78-205ENST00000460023 KIF21AQ7Z4S6 1674 aa39.45■■■■□ 3.91
CCDC78-205ENST00000460023 CFTRP13569 1480 aa39.38■■■■□ 3.9
CCDC78-205ENST00000460023 MRC2Q9UBG0 1479 aa39.26■■■■□ 3.88
CCDC78-205ENST00000460023 FANCD2Q9BXW9 1451 aa39.23■■■■□ 3.87
CCDC78-205ENST00000460023 CEP164Q9UPV0 1460 aa39.23■■■■□ 3.87
CCDC78-205ENST00000460023 DNAJC5Q9H3Z4 198 aa39.2■■■■□ 3.87
CCDC78-205ENST00000460023 CCDC88BA6NC98 1476 aa39.18■■■■□ 3.86
CCDC78-205ENST00000460023 WDR62O43379 1518 aa39.12■■■■□ 3.85
CCDC78-205ENST00000460023 PRDM2Q13029 1718 aa38.96■■■■□ 3.83
CCDC78-205ENST00000460023 URB2Q14146 1524 aaKnown RBP38.79■■■■□ 3.8
CCDC78-205ENST00000460023 ABCC8Q09428 1581 aa38.67■■■■□ 3.78
CCDC78-205ENST00000460023 SUPT5HO00267 1087 aaKnown RBP38.6■■■■□ 3.77
CCDC78-205ENST00000460023 TOPBP1Q92547 1522 aa38.53■■■■□ 3.76
CCDC78-205ENST00000460023 IFT140Q96RY7 1462 aa38.47■■■■□ 3.75
CCDC78-205ENST00000460023 DNMBPQ6XZF7 1577 aa38.45■■■■□ 3.75
CCDC78-205ENST00000460023 OSCARQ8IYS5 282 aa38.22■■■■□ 3.71
CCDC78-205ENST00000460023 ZNF608Q9ULD9 1512 aaPredicted RBP38.2■■■■□ 3.71
CCDC78-205ENST00000460023 POLA1P09884 1462 aaPredicted RBP38.16■■■■□ 3.7
CCDC78-205ENST00000460023 TARBP1Q13395 1621 aaKnown RBP38.11■■■■□ 3.69
CCDC78-205ENST00000460023 SOGA1O94964 1423 aa38.08■■■■□ 3.69
CCDC78-205ENST00000460023 EIF4G3O43432 1585 aaKnown RBP38.03■■■■□ 3.68
CCDC78-205ENST00000460023 CUX1P39880 1505 aa38.02■■■■□ 3.68
CCDC78-205ENST00000460023 FGD5Q6ZNL6 1462 aa38■■■■□ 3.67
CCDC78-205ENST00000460023 AQRO60306 1485 aaKnown RBP eCLIP37.98■■■■□ 3.67
CCDC78-205ENST00000460023 RAD54L2Q9Y4B4 1467 aa37.96■■■■□ 3.67
CCDC78-205ENST00000460023 WDR97A6NE52 1622 aa37.91■■■■□ 3.66
CCDC78-205ENST00000460023 TDRD9Q8NDG6 1382 aaKnown RBP37.86■■■■□ 3.65
CCDC78-205ENST00000460023 WRNQ14191 1432 aaPredicted RBP eCLIP37.7■■■■□ 3.63
CCDC78-205ENST00000460023 FBLN2P98095 1184 aa37.69■■■■□ 3.62
CCDC78-205ENST00000460023 GRIN2BQ13224 1484 aa37.68■■■■□ 3.62
CCDC78-205ENST00000460023 ABCA10Q8WWZ4 1543 aa37.66■■■■□ 3.62
CCDC78-205ENST00000460023 MAGI1Q96QZ7 1491 aaPredicted RBP37.64■■■■□ 3.62
CCDC78-205ENST00000460023 TOP2BQ02880 1626 aa37.63■■■■□ 3.61
CCDC78-205ENST00000460023 CHD1O14646 1710 aa37.61■■■■□ 3.61
CCDC78-205ENST00000460023 GAPVD1Q14C86 1478 aa37.61■■■■□ 3.61
CCDC78-205ENST00000460023 TRIM41Q8WV44 630 aa37.61■■■■□ 3.61
CCDC78-205ENST00000460023 BIVM-ERCC5R4GMW8 1640 aa37.61■■■■□ 3.61
CCDC78-205ENST00000460023 SNAPC4Q5SXM2 1469 aa37.6■■■■□ 3.61
CCDC78-205ENST00000460023 CHMP7Q8WUX9 453 aaPredicted RBP37.58■■■■□ 3.61
CCDC78-205ENST00000460023 SYNJ1O43426 1573 aa37.51■■■■□ 3.59
CCDC78-205ENST00000460023 ABCA5Q8WWZ7 1642 aa37.47■■■■□ 3.59
CCDC78-205ENST00000460023 SYNJ2O15056 1496 aa37.47■■■■□ 3.59
CCDC78-205ENST00000460023 PBRM1Q86U86 1689 aa37.44■■■■□ 3.58
CCDC78-205ENST00000460023 RIMBP3CA6NJZ7 1639 aa37.44■■■■□ 3.58
CCDC78-205ENST00000460023 RIMBP3BA6NNM3 1639 aa37.44■■■■□ 3.58
CCDC78-205ENST00000460023 RIMBP3Q9UFD9 1639 aa37.44■■■■□ 3.58
CCDC78-205ENST00000460023 ARHGEF11O15085 1522 aa37.43■■■■□ 3.58
CCDC78-205ENST00000460023 CLASP1Q7Z460 1538 aa37.26■■■■□ 3.55
CCDC78-205ENST00000460023 ERICH3Q5RHP9 1530 aa37.23■■■■□ 3.55
CCDC78-205ENST00000460023 CYB5RLQ6IPT4 315 aa37.19■■■■□ 3.54
CCDC78-205ENST00000460023 FHAD1B1AJZ9 1412 aa37.19■■■■□ 3.54
CCDC78-205ENST00000460023 GRIN2AQ12879 1464 aa37.15■■■■□ 3.54
CCDC78-205ENST00000460023 ADAMTS12P58397 1594 aa37.14■■■■□ 3.54
CCDC78-205ENST00000460023 ARAP1Q96P48 1450 aa37.06■■■■□ 3.52
CCDC78-205ENST00000460023 NUP160Q12769 1436 aa37.02■■■■□ 3.52
CCDC78-205ENST00000460023 KIF27Q86VH2 1401 aa37.01■■■■□ 3.51
CCDC78-205ENST00000460023 CEP170Q5SW79 1584 aa36.91■■■■□ 3.5
CCDC78-205ENST00000460023 IGF1RP08069 1367 aa36.89■■■■□ 3.5
CCDC78-205ENST00000460023 CUL7Q14999 1698 aa36.77■■■■□ 3.48
CCDC78-205ENST00000460023 SHROOM2Q13796 1616 aa36.74■■■■□ 3.47
CCDC78-205ENST00000460023 JPH4Q96JJ6 628 aa36.73■■■■□ 3.47
CCDC78-205ENST00000460023 CARMIL1Q5VZK9 1371 aa36.67■■■■□ 3.46
CCDC78-205ENST00000460023 PRG4Q92954 1404 aaPredicted RBP36.61■■■■□ 3.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms