RNA–Protein interactions for RNA: ENST00000459994.2

SDF4-204, Transcript of stromal cell derived factor 4, humanhuman

TSL 5

Gene SDF4, Length 604 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-204ENST00000459994 NISCHQ9Y2I1 1504 aa38.54■■■■□ 3.76
SDF4-204ENST00000459994 CCDC180Q9P1Z9 1646 aa34.49■■■■□ 3.11
SDF4-204ENST00000459994 ABCC9O60706 1549 aa34.19■■■■□ 3.06
SDF4-204ENST00000459994 RB1CC1Q8TDY2 1594 aa32.62■■■□□ 2.81
SDF4-204ENST00000459994 NACADO15069 1562 aa32.45■■■□□ 2.78
SDF4-204ENST00000459994 DCAF8L2P0C7V8 631 aa32.31■■■□□ 2.76
SDF4-204ENST00000459994 UNC13AQ9UPW8 1703 aa32.16■■■□□ 2.74
SDF4-204ENST00000459994 MYO15BQ96JP2 1530 aa32.05■■■□□ 2.72
SDF4-204ENST00000459994 ZCCHC6Q5VYS8 1495 aaKnown RBP32.03■■■□□ 2.72
SDF4-204ENST00000459994 PABPN1Q86U42 306 aaKnown RBP eCLIP31.84■■■□□ 2.69
SDF4-204ENST00000459994 DNAJC5BQ9UF47 199 aa31.83■■■□□ 2.69
SDF4-204ENST00000459994 BICRAQ9NZM4 1560 aa31.79■■■□□ 2.68
SDF4-204ENST00000459994 DCAF1Q9Y4B6 1507 aa31.79■■■□□ 2.68
SDF4-204ENST00000459994 SCRIBQ14160 1630 aa31.51■■■□□ 2.63
SDF4-204ENST00000459994 SHROOM4Q9ULL8 1493 aa31.15■■■□□ 2.58
SDF4-204ENST00000459994 CC2D2AQ9P2K1 1620 aa30.94■■■□□ 2.54
SDF4-204ENST00000459994 EIF4G1Q04637 1599 aaKnown RBP30.91■■■□□ 2.54
SDF4-204ENST00000459994 CECR2Q9BXF3 1484 aa30.7■■■□□ 2.51
SDF4-204ENST00000459994 SMARCA4P51532 1647 aa30.06■■■□□ 2.4
SDF4-204ENST00000459994 NCAPD3P42695 1498 aa29.93■■■□□ 2.38
SDF4-204ENST00000459994 ATAD2BQ9ULI0 1458 aa29.93■■■□□ 2.38
SDF4-204ENST00000459994 BAZ1AQ9NRL2 1556 aaPredicted RBP29.86■■■□□ 2.37
SDF4-204ENST00000459994 SMARCA2P51531 1590 aa29.83■■■□□ 2.37
SDF4-204ENST00000459994 HMGXB3Q12766 1538 aa29.78■■■□□ 2.36
SDF4-204ENST00000459994 MROH2BQ7Z745 1585 aa29.77■■■□□ 2.36
SDF4-204ENST00000459994 PEG3Q9GZU2 1588 aa29.71■■■□□ 2.35
SDF4-204ENST00000459994 BAZ1BQ9UIG0 1483 aaKnown RBP29.64■■■□□ 2.34
SDF4-204ENST00000459994 NESP48681 1621 aa29.52■■■□□ 2.32
SDF4-204ENST00000459994 WIZO95785 1651 aa29.5■■■□□ 2.31
SDF4-204ENST00000459994 ERCC6Q03468 1493 aa29.4■■■□□ 2.3
SDF4-204ENST00000459994 LAMC3Q9Y6N6 1575 aa29.26■■■□□ 2.27
SDF4-204ENST00000459994 CUX2O14529 1486 aa29.23■■■□□ 2.27
SDF4-204ENST00000459994 KIF21AQ7Z4S6 1674 aa29.22■■■□□ 2.27
SDF4-204ENST00000459994 RSF1Q96T23 1441 aaPredicted RBP29.19■■■□□ 2.26
SDF4-204ENST00000459994 THOC2Q8NI27 1593 aaKnown RBP29.17■■■□□ 2.26
SDF4-204ENST00000459994 CADPSQ9ULU8 1353 aa29.02■■■□□ 2.24
SDF4-204ENST00000459994 TOP2AP11388 1531 aaKnown RBP29.02■■■□□ 2.24
SDF4-204ENST00000459994 PDS5BQ9NTI5 1447 aa28.97■■■□□ 2.23
SDF4-204ENST00000459994 DNAJC5Q9H3Z4 198 aa28.85■■■□□ 2.21
SDF4-204ENST00000459994 CFTRP13569 1480 aa28.79■■■□□ 2.2
SDF4-204ENST00000459994 MRC2Q9UBG0 1479 aa28.79■■■□□ 2.2
SDF4-204ENST00000459994 WDR62O43379 1518 aa28.75■■■□□ 2.19
SDF4-204ENST00000459994 FANCD2Q9BXW9 1451 aa28.74■■■□□ 2.19
SDF4-204ENST00000459994 CEP164Q9UPV0 1460 aa28.73■■■□□ 2.19
SDF4-204ENST00000459994 PRDM2Q13029 1718 aa28.73■■■□□ 2.19
SDF4-204ENST00000459994 CCDC88BA6NC98 1476 aa28.7■■■□□ 2.18
SDF4-204ENST00000459994 URB2Q14146 1524 aaKnown RBP28.56■■■□□ 2.16
SDF4-204ENST00000459994 TOPBP1Q92547 1522 aa28.27■■■□□ 2.12
SDF4-204ENST00000459994 DNMBPQ6XZF7 1577 aa28.2■■■□□ 2.1
SDF4-204ENST00000459994 ZNF608Q9ULD9 1512 aaPredicted RBP28.17■■■□□ 2.1
SDF4-204ENST00000459994 IFT140Q96RY7 1462 aa28.12■■■□□ 2.09
SDF4-204ENST00000459994 SUPT5HO00267 1087 aaKnown RBP28.1■■■□□ 2.09
SDF4-204ENST00000459994 ABCC8Q09428 1581 aa28.09■■■□□ 2.09
SDF4-204ENST00000459994 TARBP1Q13395 1621 aaKnown RBP28.06■■■□□ 2.08
SDF4-204ENST00000459994 EIF4G3O43432 1585 aaKnown RBP28.05■■■□□ 2.08
SDF4-204ENST00000459994 POLA1P09884 1462 aaPredicted RBP28■■■□□ 2.07
SDF4-204ENST00000459994 CUX1P39880 1505 aa27.94■■■□□ 2.06
SDF4-204ENST00000459994 RAD54L2Q9Y4B4 1467 aa27.93■■■□□ 2.06
SDF4-204ENST00000459994 AQRO60306 1485 aaKnown RBP eCLIP27.9■■■□□ 2.06
SDF4-204ENST00000459994 OSCARQ8IYS5 282 aa27.89■■■□□ 2.06
SDF4-204ENST00000459994 FGD5Q6ZNL6 1462 aa27.88■■■□□ 2.05
SDF4-204ENST00000459994 CHD1O14646 1710 aa27.87■■■□□ 2.05
SDF4-204ENST00000459994 SOGA1O94964 1423 aa27.81■■■□□ 2.04
SDF4-204ENST00000459994 WDR97A6NE52 1622 aa27.79■■■□□ 2.04
SDF4-204ENST00000459994 TRIM41Q8WV44 630 aa27.76■■■□□ 2.03
SDF4-204ENST00000459994 TDRD9Q8NDG6 1382 aaKnown RBP27.75■■■□□ 2.03
SDF4-204ENST00000459994 RIMBP3CA6NJZ7 1639 aa27.71■■■□□ 2.03
SDF4-204ENST00000459994 RIMBP3BA6NNM3 1639 aa27.71■■■□□ 2.03
SDF4-204ENST00000459994 RIMBP3Q9UFD9 1639 aa27.71■■■□□ 2.03
SDF4-204ENST00000459994 PBRM1Q86U86 1689 aa27.65■■■□□ 2.02
SDF4-204ENST00000459994 SNAPC4Q5SXM2 1469 aa27.64■■■□□ 2.01
SDF4-204ENST00000459994 BIVM-ERCC5R4GMW8 1640 aa27.6■■■□□ 2.01
SDF4-204ENST00000459994 SYNJ1O43426 1573 aa27.6■■■□□ 2.01
SDF4-204ENST00000459994 ARHGEF11O15085 1522 aa27.58■■■□□ 2.01
SDF4-204ENST00000459994 FBLN2P98095 1184 aa27.57■■■□□ 2
SDF4-204ENST00000459994 ABCA5Q8WWZ7 1642 aa27.56■■■□□ 2
SDF4-204ENST00000459994 TOP2BQ02880 1626 aa27.56■■■□□ 2
SDF4-204ENST00000459994 ABCA10Q8WWZ4 1543 aa27.54■■■□□ 2
SDF4-204ENST00000459994 GRIN2BQ13224 1484 aa27.53■■■□□ 2
SDF4-204ENST00000459994 GAPVD1Q14C86 1478 aa27.5■■□□□ 1.99
SDF4-204ENST00000459994 MAGI1Q96QZ7 1491 aaPredicted RBP27.5■■□□□ 1.99
SDF4-204ENST00000459994 WRNQ14191 1432 aaPredicted RBP eCLIP27.49■■□□□ 1.99
SDF4-204ENST00000459994 CLASP1Q7Z460 1538 aa27.44■■□□□ 1.98
SDF4-204ENST00000459994 SYNJ2O15056 1496 aa27.42■■□□□ 1.98
SDF4-204ENST00000459994 CHMP7Q8WUX9 453 aaPredicted RBP27.37■■□□□ 1.97
SDF4-204ENST00000459994 ARAP1Q96P48 1450 aa27.36■■□□□ 1.97
SDF4-204ENST00000459994 ADAMTS12P58397 1594 aa27.31■■□□□ 1.96
SDF4-204ENST00000459994 CYB5RLQ6IPT4 315 aa27.28■■□□□ 1.96
SDF4-204ENST00000459994 GRIN2AQ12879 1464 aa27.22■■□□□ 1.95
SDF4-204ENST00000459994 CEP170Q5SW79 1584 aa27.2■■□□□ 1.94
SDF4-204ENST00000459994 ERICH3Q5RHP9 1530 aa27.19■■□□□ 1.94
SDF4-204ENST00000459994 FHAD1B1AJZ9 1412 aa27.13■■□□□ 1.93
SDF4-204ENST00000459994 ERCC6L2Q5T890 1561 aa27.13■■□□□ 1.93
SDF4-204ENST00000459994 NUP160Q12769 1436 aa27.11■■□□□ 1.93
SDF4-204ENST00000459994 SHROOM2Q13796 1616 aa27.04■■□□□ 1.92
SDF4-204ENST00000459994 RUSC2Q8N2Y8 1516 aa26.94■■□□□ 1.9
SDF4-204ENST00000459994 CUL7Q14999 1698 aa26.9■■□□□ 1.9
SDF4-204ENST00000459994 IGF1RP08069 1367 aa26.9■■□□□ 1.9
SDF4-204ENST00000459994 KIF27Q86VH2 1401 aa26.9■■□□□ 1.9
SDF4-204ENST00000459994 TRHP20396 242 aaPredicted RBP26.84■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms