RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 NISCHQ9Y2I1 1504 aa45.55■■■■■ 4.88
HOXD3-204ENST00000459979 ABCC9O60706 1549 aa41.11■■■■■ 4.17
HOXD3-204ENST00000459979 CCDC180Q9P1Z9 1646 aa40.94■■■■■ 4.14
HOXD3-204ENST00000459979 RB1CC1Q8TDY2 1594 aa39.01■■■■□ 3.84
HOXD3-204ENST00000459979 NACADO15069 1562 aa38.69■■■■□ 3.78
HOXD3-204ENST00000459979 DNAJC5BQ9UF47 199 aa38.65■■■■□ 3.78
HOXD3-204ENST00000459979 DCAF8L2P0C7V8 631 aa38.54■■■■□ 3.76
HOXD3-204ENST00000459979 UNC13AQ9UPW8 1703 aa38.29■■■■□ 3.72
HOXD3-204ENST00000459979 PABPN1Q86U42 306 aaKnown RBP eCLIP38.24■■■■□ 3.71
HOXD3-204ENST00000459979 MYO15BQ96JP2 1530 aa38.05■■■■□ 3.68
HOXD3-204ENST00000459979 BICRAQ9NZM4 1560 aa37.93■■■■□ 3.66
HOXD3-204ENST00000459979 ZCCHC6Q5VYS8 1495 aaKnown RBP37.73■■■■□ 3.63
HOXD3-204ENST00000459979 DCAF1Q9Y4B6 1507 aa37.55■■■■□ 3.6
HOXD3-204ENST00000459979 SCRIBQ14160 1630 aa37.39■■■■□ 3.58
HOXD3-204ENST00000459979 SHROOM4Q9ULL8 1493 aa37.26■■■■□ 3.55
HOXD3-204ENST00000459979 CC2D2AQ9P2K1 1620 aa37.13■■■■□ 3.53
HOXD3-204ENST00000459979 CECR2Q9BXF3 1484 aa37■■■■□ 3.51
HOXD3-204ENST00000459979 EIF4G1Q04637 1599 aaKnown RBP36.99■■■■□ 3.51
HOXD3-204ENST00000459979 NCAPD3P42695 1498 aa35.69■■■■□ 3.3
HOXD3-204ENST00000459979 ATAD2BQ9ULI0 1458 aa35.61■■■■□ 3.29
HOXD3-204ENST00000459979 SMARCA4P51532 1647 aa35.6■■■■□ 3.29
HOXD3-204ENST00000459979 DNAJC5Q9H3Z4 198 aa35.49■■■■□ 3.27
HOXD3-204ENST00000459979 SMARCA2P51531 1590 aa35.49■■■■□ 3.27
HOXD3-204ENST00000459979 ERCC6Q03468 1493 aa35.46■■■■□ 3.27
HOXD3-204ENST00000459979 HMGXB3Q12766 1538 aa35.46■■■■□ 3.27
HOXD3-204ENST00000459979 CUX2O14529 1486 aa35.38■■■■□ 3.25
HOXD3-204ENST00000459979 BAZ1AQ9NRL2 1556 aaPredicted RBP35.35■■■■□ 3.25
HOXD3-204ENST00000459979 NESP48681 1621 aa35.3■■■■□ 3.24
HOXD3-204ENST00000459979 BAZ1BQ9UIG0 1483 aaKnown RBP35.28■■■■□ 3.24
HOXD3-204ENST00000459979 PEG3Q9GZU2 1588 aa35.19■■■■□ 3.22
HOXD3-204ENST00000459979 MROH2BQ7Z745 1585 aa35.15■■■■□ 3.22
HOXD3-204ENST00000459979 THOC2Q8NI27 1593 aaKnown RBP34.96■■■■□ 3.19
HOXD3-204ENST00000459979 LAMC3Q9Y6N6 1575 aa34.95■■■■□ 3.18
HOXD3-204ENST00000459979 KIF21AQ7Z4S6 1674 aa34.89■■■■□ 3.18
HOXD3-204ENST00000459979 WIZO95785 1651 aa34.77■■■■□ 3.16
HOXD3-204ENST00000459979 PDS5BQ9NTI5 1447 aa34.71■■■■□ 3.15
HOXD3-204ENST00000459979 CADPSQ9ULU8 1353 aa34.62■■■■□ 3.13
HOXD3-204ENST00000459979 MRC2Q9UBG0 1479 aa34.47■■■■□ 3.11
HOXD3-204ENST00000459979 RSF1Q96T23 1441 aaPredicted RBP34.45■■■■□ 3.11
HOXD3-204ENST00000459979 WDR62O43379 1518 aa34.4■■■■□ 3.1
HOXD3-204ENST00000459979 CEP164Q9UPV0 1460 aa34.32■■■■□ 3.08
HOXD3-204ENST00000459979 FANCD2Q9BXW9 1451 aa34.27■■■■□ 3.08
HOXD3-204ENST00000459979 TOP2AP11388 1531 aaKnown RBP34.25■■■■□ 3.07
HOXD3-204ENST00000459979 CFTRP13569 1480 aa34.2■■■■□ 3.07
HOXD3-204ENST00000459979 URB2Q14146 1524 aaKnown RBP34.03■■■■□ 3.04
HOXD3-204ENST00000459979 TRIM41Q8WV44 630 aa33.99■■■■□ 3.03
HOXD3-204ENST00000459979 PRDM2Q13029 1718 aa33.99■■■■□ 3.03
HOXD3-204ENST00000459979 CCDC88BA6NC98 1476 aa33.86■■■■□ 3.01
HOXD3-204ENST00000459979 OSCARQ8IYS5 282 aa33.73■■■□□ 2.99
HOXD3-204ENST00000459979 ZNF608Q9ULD9 1512 aaPredicted RBP33.64■■■□□ 2.98
HOXD3-204ENST00000459979 TOPBP1Q92547 1522 aa33.63■■■□□ 2.97
HOXD3-204ENST00000459979 IFT140Q96RY7 1462 aa33.6■■■□□ 2.97
HOXD3-204ENST00000459979 DNMBPQ6XZF7 1577 aa33.49■■■□□ 2.95
HOXD3-204ENST00000459979 EIF4G3O43432 1585 aaKnown RBP33.47■■■□□ 2.95
HOXD3-204ENST00000459979 ABCC8Q09428 1581 aa33.45■■■□□ 2.95
HOXD3-204ENST00000459979 RIMBP3CA6NJZ7 1639 aa33.43■■■□□ 2.94
HOXD3-204ENST00000459979 RIMBP3BA6NNM3 1639 aa33.43■■■□□ 2.94
HOXD3-204ENST00000459979 RIMBP3Q9UFD9 1639 aa33.43■■■□□ 2.94
HOXD3-204ENST00000459979 TARBP1Q13395 1621 aaKnown RBP33.35■■■□□ 2.93
HOXD3-204ENST00000459979 SUPT5HO00267 1087 aaKnown RBP33.33■■■□□ 2.93
HOXD3-204ENST00000459979 CHD1O14646 1710 aa33.3■■■□□ 2.92
HOXD3-204ENST00000459979 AQRO60306 1485 aaKnown RBP eCLIP33.3■■■□□ 2.92
HOXD3-204ENST00000459979 POLA1P09884 1462 aaPredicted RBP33.27■■■□□ 2.92
HOXD3-204ENST00000459979 ARHGEF11O15085 1522 aa33.27■■■□□ 2.92
HOXD3-204ENST00000459979 RAD54L2Q9Y4B4 1467 aa33.19■■■□□ 2.9
HOXD3-204ENST00000459979 FBLN2P98095 1184 aa33.1■■■□□ 2.89
HOXD3-204ENST00000459979 SOGA1O94964 1423 aa33.09■■■□□ 2.89
HOXD3-204ENST00000459979 TDRD9Q8NDG6 1382 aaKnown RBP33.08■■■□□ 2.89
HOXD3-204ENST00000459979 FGD5Q6ZNL6 1462 aa33.06■■■□□ 2.88
HOXD3-204ENST00000459979 CUX1P39880 1505 aa33.03■■■□□ 2.88
HOXD3-204ENST00000459979 CYB5RLQ6IPT4 315 aa33.01■■■□□ 2.87
HOXD3-204ENST00000459979 SNAPC4Q5SXM2 1469 aa32.97■■■□□ 2.87
HOXD3-204ENST00000459979 ARAP1Q96P48 1450 aa32.95■■■□□ 2.87
HOXD3-204ENST00000459979 WDR97A6NE52 1622 aa32.91■■■□□ 2.86
HOXD3-204ENST00000459979 CLASP1Q7Z460 1538 aa32.82■■■□□ 2.84
HOXD3-204ENST00000459979 GRIN2BQ13224 1484 aa32.81■■■□□ 2.84
HOXD3-204ENST00000459979 MAGI1Q96QZ7 1491 aaPredicted RBP32.81■■■□□ 2.84
HOXD3-204ENST00000459979 PBRM1Q86U86 1689 aa32.79■■■□□ 2.84
HOXD3-204ENST00000459979 CHMP7Q8WUX9 453 aaPredicted RBP32.79■■■□□ 2.84
HOXD3-204ENST00000459979 SYNJ1O43426 1573 aa32.77■■■□□ 2.84
HOXD3-204ENST00000459979 SYNJ2O15056 1496 aa32.72■■■□□ 2.83
HOXD3-204ENST00000459979 GAPVD1Q14C86 1478 aa32.69■■■□□ 2.82
HOXD3-204ENST00000459979 TRHP20396 242 aaPredicted RBP32.69■■■□□ 2.82
HOXD3-204ENST00000459979 ABCA5Q8WWZ7 1642 aa32.66■■■□□ 2.82
HOXD3-204ENST00000459979 ABCA10Q8WWZ4 1543 aa32.63■■■□□ 2.81
HOXD3-204ENST00000459979 BIVM-ERCC5R4GMW8 1640 aa32.48■■■□□ 2.79
HOXD3-204ENST00000459979 WRNQ14191 1432 aaPredicted RBP eCLIP32.46■■■□□ 2.79
HOXD3-204ENST00000459979 TOP2BQ02880 1626 aa32.44■■■□□ 2.78
HOXD3-204ENST00000459979 ADAMTS12P58397 1594 aa32.42■■■□□ 2.78
HOXD3-204ENST00000459979 GRIN2AQ12879 1464 aa32.41■■■□□ 2.78
HOXD3-204ENST00000459979 ERCC6L2Q5T890 1561 aa32.37■■■□□ 2.77
HOXD3-204ENST00000459979 CEP170Q5SW79 1584 aa32.36■■■□□ 2.77
HOXD3-204ENST00000459979 NUP160Q12769 1436 aa32.28■■■□□ 2.76
HOXD3-204ENST00000459979 FHAD1B1AJZ9 1412 aa32.25■■■□□ 2.75
HOXD3-204ENST00000459979 ERICH3Q5RHP9 1530 aa32.21■■■□□ 2.75
HOXD3-204ENST00000459979 SHROOM2Q13796 1616 aa32.2■■■□□ 2.75
HOXD3-204ENST00000459979 PRG4Q92954 1404 aaPredicted RBP32■■■□□ 2.71
HOXD3-204ENST00000459979 RUSC2Q8N2Y8 1516 aa31.97■■■□□ 2.71
HOXD3-204ENST00000459979 JPH4Q96JJ6 628 aa31.94■■■□□ 2.7
HOXD3-204ENST00000459979 KIF13AQ9H1H9 1805 aa31.9■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms