RNA–Protein interactions for RNA: ENST00000459927.5

GPNMB-204, Transcript of glycoprotein nmb, humanhuman

TSL 4

Gene GPNMB, Length 577 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-204ENST00000459927 NISCHQ9Y2I1 1504 aa30.93■■■□□ 2.54
GPNMB-204ENST00000459927 ABCC9O60706 1549 aa27.92■■■□□ 2.06
GPNMB-204ENST00000459927 CCDC180Q9P1Z9 1646 aa27.67■■■□□ 2.02
GPNMB-204ENST00000459927 DNAJC5BQ9UF47 199 aa26.48■■□□□ 1.83
GPNMB-204ENST00000459927 RB1CC1Q8TDY2 1594 aa26.46■■□□□ 1.83
GPNMB-204ENST00000459927 DCAF8L2P0C7V8 631 aa26.36■■□□□ 1.81
GPNMB-204ENST00000459927 NACADO15069 1562 aa26.29■■□□□ 1.8
GPNMB-204ENST00000459927 PABPN1Q86U42 306 aaKnown RBP eCLIP26.1■■□□□ 1.77
GPNMB-204ENST00000459927 MYO15BQ96JP2 1530 aa25.88■■□□□ 1.73
GPNMB-204ENST00000459927 UNC13AQ9UPW8 1703 aa25.82■■□□□ 1.72
GPNMB-204ENST00000459927 BICRAQ9NZM4 1560 aa25.72■■□□□ 1.71
GPNMB-204ENST00000459927 ZCCHC6Q5VYS8 1495 aaKnown RBP25.53■■□□□ 1.68
GPNMB-204ENST00000459927 DCAF1Q9Y4B6 1507 aa25.51■■□□□ 1.67
GPNMB-204ENST00000459927 SHROOM4Q9ULL8 1493 aa25.28■■□□□ 1.64
GPNMB-204ENST00000459927 SCRIBQ14160 1630 aa25.23■■□□□ 1.63
GPNMB-204ENST00000459927 CC2D2AQ9P2K1 1620 aa25.18■■□□□ 1.62
GPNMB-204ENST00000459927 CECR2Q9BXF3 1484 aa25.16■■□□□ 1.62
GPNMB-204ENST00000459927 EIF4G1Q04637 1599 aaKnown RBP25.08■■□□□ 1.61
GPNMB-204ENST00000459927 DNAJC5Q9H3Z4 198 aa24.39■■□□□ 1.49
GPNMB-204ENST00000459927 NCAPD3P42695 1498 aa24.34■■□□□ 1.49
GPNMB-204ENST00000459927 ATAD2BQ9ULI0 1458 aa24.22■■□□□ 1.47
GPNMB-204ENST00000459927 SMARCA2P51531 1590 aa24.08■■□□□ 1.45
GPNMB-204ENST00000459927 ERCC6Q03468 1493 aa24.08■■□□□ 1.45
GPNMB-204ENST00000459927 SMARCA4P51532 1647 aa24.08■■□□□ 1.45
GPNMB-204ENST00000459927 CUX2O14529 1486 aa24.07■■□□□ 1.44
GPNMB-204ENST00000459927 HMGXB3Q12766 1538 aa24.02■■□□□ 1.44
GPNMB-204ENST00000459927 BAZ1AQ9NRL2 1556 aaPredicted RBP23.96■■□□□ 1.43
GPNMB-204ENST00000459927 NESP48681 1621 aa23.95■■□□□ 1.43
GPNMB-204ENST00000459927 BAZ1BQ9UIG0 1483 aaKnown RBP23.93■■□□□ 1.42
GPNMB-204ENST00000459927 PEG3Q9GZU2 1588 aa23.86■■□□□ 1.41
GPNMB-204ENST00000459927 MROH2BQ7Z745 1585 aa23.83■■□□□ 1.41
GPNMB-204ENST00000459927 LAMC3Q9Y6N6 1575 aa23.71■■□□□ 1.39
GPNMB-204ENST00000459927 PDS5BQ9NTI5 1447 aa23.66■■□□□ 1.38
GPNMB-204ENST00000459927 CADPSQ9ULU8 1353 aa23.62■■□□□ 1.37
GPNMB-204ENST00000459927 THOC2Q8NI27 1593 aaKnown RBP23.61■■□□□ 1.37
GPNMB-204ENST00000459927 KIF21AQ7Z4S6 1674 aa23.54■■□□□ 1.36
GPNMB-204ENST00000459927 WIZO95785 1651 aa23.51■■□□□ 1.35
GPNMB-204ENST00000459927 MRC2Q9UBG0 1479 aa23.39■■□□□ 1.34
GPNMB-204ENST00000459927 RSF1Q96T23 1441 aaPredicted RBP23.34■■□□□ 1.33
GPNMB-204ENST00000459927 WDR62O43379 1518 aa23.31■■□□□ 1.32
GPNMB-204ENST00000459927 FANCD2Q9BXW9 1451 aa23.28■■□□□ 1.32
GPNMB-204ENST00000459927 CFTRP13569 1480 aa23.27■■□□□ 1.32
GPNMB-204ENST00000459927 CEP164Q9UPV0 1460 aa23.27■■□□□ 1.32
GPNMB-204ENST00000459927 TRIM41Q8WV44 630 aa23.22■■□□□ 1.31
GPNMB-204ENST00000459927 TOP2AP11388 1531 aaKnown RBP23.16■■□□□ 1.3
GPNMB-204ENST00000459927 OSCARQ8IYS5 282 aa23.15■■□□□ 1.3
GPNMB-204ENST00000459927 URB2Q14146 1524 aaKnown RBP23.08■■□□□ 1.29
GPNMB-204ENST00000459927 CCDC88BA6NC98 1476 aa23.02■■□□□ 1.28
GPNMB-204ENST00000459927 PRDM2Q13029 1718 aa22.85■■□□□ 1.25
GPNMB-204ENST00000459927 IFT140Q96RY7 1462 aa22.85■■□□□ 1.25
GPNMB-204ENST00000459927 ZNF608Q9ULD9 1512 aaPredicted RBP22.84■■□□□ 1.25
GPNMB-204ENST00000459927 TOPBP1Q92547 1522 aa22.82■■□□□ 1.24
GPNMB-204ENST00000459927 ABCC8Q09428 1581 aa22.8■■□□□ 1.24
GPNMB-204ENST00000459927 AQRO60306 1485 aaKnown RBP eCLIP22.67■■□□□ 1.22
GPNMB-204ENST00000459927 DNMBPQ6XZF7 1577 aa22.67■■□□□ 1.22
GPNMB-204ENST00000459927 RIMBP3CA6NJZ7 1639 aa22.64■■□□□ 1.22
GPNMB-204ENST00000459927 RIMBP3BA6NNM3 1639 aa22.64■■□□□ 1.22
GPNMB-204ENST00000459927 RIMBP3Q9UFD9 1639 aa22.64■■□□□ 1.22
GPNMB-204ENST00000459927 CYB5RLQ6IPT4 315 aa22.62■■□□□ 1.21
GPNMB-204ENST00000459927 FBLN2P98095 1184 aa22.61■■□□□ 1.21
GPNMB-204ENST00000459927 TARBP1Q13395 1621 aaKnown RBP22.59■■□□□ 1.21
GPNMB-204ENST00000459927 EIF4G3O43432 1585 aaKnown RBP22.59■■□□□ 1.21
GPNMB-204ENST00000459927 ARHGEF11O15085 1522 aa22.57■■□□□ 1.2
GPNMB-204ENST00000459927 POLA1P09884 1462 aaPredicted RBP22.57■■□□□ 1.2
GPNMB-204ENST00000459927 SOGA1O94964 1423 aa22.57■■□□□ 1.2
GPNMB-204ENST00000459927 RAD54L2Q9Y4B4 1467 aa22.54■■□□□ 1.2
GPNMB-204ENST00000459927 TDRD9Q8NDG6 1382 aaKnown RBP22.54■■□□□ 1.2
GPNMB-204ENST00000459927 CHD1O14646 1710 aa22.45■■□□□ 1.19
GPNMB-204ENST00000459927 CHMP7Q8WUX9 453 aaPredicted RBP22.43■■□□□ 1.18
GPNMB-204ENST00000459927 FGD5Q6ZNL6 1462 aa22.41■■□□□ 1.18
GPNMB-204ENST00000459927 TRHP20396 242 aaPredicted RBP22.37■■□□□ 1.17
GPNMB-204ENST00000459927 CUX1P39880 1505 aa22.36■■□□□ 1.17
GPNMB-204ENST00000459927 ARAP1Q96P48 1450 aa22.35■■□□□ 1.17
GPNMB-204ENST00000459927 SNAPC4Q5SXM2 1469 aa22.34■■□□□ 1.17
GPNMB-204ENST00000459927 SUPT5HO00267 1087 aaKnown RBP22.33■■□□□ 1.17
GPNMB-204ENST00000459927 GRIN2BQ13224 1484 aa22.3■■□□□ 1.16
GPNMB-204ENST00000459927 WDR97A6NE52 1622 aa22.29■■□□□ 1.16
GPNMB-204ENST00000459927 MAGI1Q96QZ7 1491 aaPredicted RBP22.28■■□□□ 1.16
GPNMB-204ENST00000459927 SYNJ2O15056 1496 aa22.23■■□□□ 1.15
GPNMB-204ENST00000459927 GAPVD1Q14C86 1478 aa22.22■■□□□ 1.15
GPNMB-204ENST00000459927 CLASP1Q7Z460 1538 aa22.22■■□□□ 1.15
GPNMB-204ENST00000459927 SYNJ1O43426 1573 aa22.2■■□□□ 1.14
GPNMB-204ENST00000459927 ABCA10Q8WWZ4 1543 aa22.16■■□□□ 1.14
GPNMB-204ENST00000459927 WRNQ14191 1432 aaPredicted RBP eCLIP22.09■■□□□ 1.13
GPNMB-204ENST00000459927 PBRM1Q86U86 1689 aa22.08■■□□□ 1.13
GPNMB-204ENST00000459927 ABCA5Q8WWZ7 1642 aa22.06■■□□□ 1.12
GPNMB-204ENST00000459927 GRIN2AQ12879 1464 aa21.98■■□□□ 1.11
GPNMB-204ENST00000459927 TOP2BQ02880 1626 aa21.95■■□□□ 1.1
GPNMB-204ENST00000459927 FHAD1B1AJZ9 1412 aa21.94■■□□□ 1.1
GPNMB-204ENST00000459927 NUP160Q12769 1436 aa21.94■■□□□ 1.1
GPNMB-204ENST00000459927 BIVM-ERCC5R4GMW8 1640 aa21.92■■□□□ 1.1
GPNMB-204ENST00000459927 ERCC6L2Q5T890 1561 aa21.91■■□□□ 1.1
GPNMB-204ENST00000459927 JPH4Q96JJ6 628 aa21.89■■□□□ 1.09
GPNMB-204ENST00000459927 CEP170Q5SW79 1584 aa21.89■■□□□ 1.09
GPNMB-204ENST00000459927 ADAMTS12P58397 1594 aa21.87■■□□□ 1.09
GPNMB-204ENST00000459927 ERICH3Q5RHP9 1530 aa21.85■■□□□ 1.09
GPNMB-204ENST00000459927 AEBP2Q6ZN18 517 aaPredicted RBP21.79■■□□□ 1.08
GPNMB-204ENST00000459927 SHROOM2Q13796 1616 aa21.79■■□□□ 1.08
GPNMB-204ENST00000459927 PRG4Q92954 1404 aaPredicted RBP21.79■■□□□ 1.08
GPNMB-204ENST00000459927 IGF1RP08069 1367 aa21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms