RNA–Protein interactions for RNA: ENST00000459904.1

LMNA-209, Transcript of lamin A/C, humanhuman

TSL 2

Gene LMNA, Length 916 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-209ENST00000459904 NISCHQ9Y2I1 1504 aa38.14■■■■□ 3.7
LMNA-209ENST00000459904 ABCC9O60706 1549 aa34.6■■■■□ 3.13
LMNA-209ENST00000459904 CCDC180Q9P1Z9 1646 aa34.26■■■■□ 3.08
LMNA-209ENST00000459904 RB1CC1Q8TDY2 1594 aa32.7■■■□□ 2.82
LMNA-209ENST00000459904 DNAJC5BQ9UF47 199 aa32.65■■■□□ 2.82
LMNA-209ENST00000459904 DCAF8L2P0C7V8 631 aa32.43■■■□□ 2.78
LMNA-209ENST00000459904 NACADO15069 1562 aa32.38■■■□□ 2.77
LMNA-209ENST00000459904 UNC13AQ9UPW8 1703 aa32.25■■■□□ 2.75
LMNA-209ENST00000459904 PABPN1Q86U42 306 aaKnown RBP eCLIP32.22■■■□□ 2.75
LMNA-209ENST00000459904 BICRAQ9NZM4 1560 aa31.88■■■□□ 2.69
LMNA-209ENST00000459904 MYO15BQ96JP2 1530 aa31.74■■■□□ 2.67
LMNA-209ENST00000459904 ZCCHC6Q5VYS8 1495 aaKnown RBP31.56■■■□□ 2.64
LMNA-209ENST00000459904 SCRIBQ14160 1630 aa31.41■■■□□ 2.62
LMNA-209ENST00000459904 DCAF1Q9Y4B6 1507 aa31.34■■■□□ 2.61
LMNA-209ENST00000459904 CC2D2AQ9P2K1 1620 aa31.21■■■□□ 2.59
LMNA-209ENST00000459904 CECR2Q9BXF3 1484 aa31.08■■■□□ 2.57
LMNA-209ENST00000459904 SHROOM4Q9ULL8 1493 aa31.08■■■□□ 2.57
LMNA-209ENST00000459904 EIF4G1Q04637 1599 aaKnown RBP31.05■■■□□ 2.56
LMNA-209ENST00000459904 DNAJC5Q9H3Z4 198 aa29.92■■■□□ 2.38
LMNA-209ENST00000459904 NCAPD3P42695 1498 aa29.88■■■□□ 2.37
LMNA-209ENST00000459904 ATAD2BQ9ULI0 1458 aa29.86■■■□□ 2.37
LMNA-209ENST00000459904 SMARCA4P51532 1647 aa29.84■■■□□ 2.37
LMNA-209ENST00000459904 ERCC6Q03468 1493 aa29.78■■■□□ 2.36
LMNA-209ENST00000459904 NESP48681 1621 aa29.72■■■□□ 2.35
LMNA-209ENST00000459904 SMARCA2P51531 1590 aa29.7■■■□□ 2.35
LMNA-209ENST00000459904 CUX2O14529 1486 aa29.68■■■□□ 2.34
LMNA-209ENST00000459904 HMGXB3Q12766 1538 aa29.66■■■□□ 2.34
LMNA-209ENST00000459904 BAZ1AQ9NRL2 1556 aaPredicted RBP29.56■■■□□ 2.32
LMNA-209ENST00000459904 BAZ1BQ9UIG0 1483 aaKnown RBP29.56■■■□□ 2.32
LMNA-209ENST00000459904 MROH2BQ7Z745 1585 aa29.49■■■□□ 2.31
LMNA-209ENST00000459904 PEG3Q9GZU2 1588 aa29.43■■■□□ 2.3
LMNA-209ENST00000459904 THOC2Q8NI27 1593 aaKnown RBP29.37■■■□□ 2.29
LMNA-209ENST00000459904 KIF21AQ7Z4S6 1674 aa29.37■■■□□ 2.29
LMNA-209ENST00000459904 LAMC3Q9Y6N6 1575 aa29.28■■■□□ 2.28
LMNA-209ENST00000459904 WIZO95785 1651 aa29.21■■■□□ 2.27
LMNA-209ENST00000459904 PDS5BQ9NTI5 1447 aa29.06■■■□□ 2.24
LMNA-209ENST00000459904 CADPSQ9ULU8 1353 aa29■■■□□ 2.23
LMNA-209ENST00000459904 MRC2Q9UBG0 1479 aa28.9■■■□□ 2.22
LMNA-209ENST00000459904 WDR62O43379 1518 aa28.84■■■□□ 2.21
LMNA-209ENST00000459904 CEP164Q9UPV0 1460 aa28.76■■■□□ 2.19
LMNA-209ENST00000459904 FANCD2Q9BXW9 1451 aa28.74■■■□□ 2.19
LMNA-209ENST00000459904 RSF1Q96T23 1441 aaPredicted RBP28.74■■■□□ 2.19
LMNA-209ENST00000459904 TRIM41Q8WV44 630 aa28.72■■■□□ 2.19
LMNA-209ENST00000459904 TOP2AP11388 1531 aaKnown RBP28.65■■■□□ 2.18
LMNA-209ENST00000459904 CFTRP13569 1480 aa28.64■■■□□ 2.17
LMNA-209ENST00000459904 URB2Q14146 1524 aaKnown RBP28.58■■■□□ 2.17
LMNA-209ENST00000459904 PRDM2Q13029 1718 aa28.51■■■□□ 2.15
LMNA-209ENST00000459904 CCDC88BA6NC98 1476 aa28.39■■■□□ 2.13
LMNA-209ENST00000459904 OSCARQ8IYS5 282 aa28.33■■■□□ 2.13
LMNA-209ENST00000459904 ZNF608Q9ULD9 1512 aaPredicted RBP28.28■■■□□ 2.12
LMNA-209ENST00000459904 TOPBP1Q92547 1522 aa28.2■■■□□ 2.1
LMNA-209ENST00000459904 RIMBP3CA6NJZ7 1639 aa28.15■■■□□ 2.1
LMNA-209ENST00000459904 RIMBP3BA6NNM3 1639 aa28.15■■■□□ 2.1
LMNA-209ENST00000459904 RIMBP3Q9UFD9 1639 aa28.15■■■□□ 2.1
LMNA-209ENST00000459904 IFT140Q96RY7 1462 aa28.15■■■□□ 2.1
LMNA-209ENST00000459904 EIF4G3O43432 1585 aaKnown RBP28.09■■■□□ 2.09
LMNA-209ENST00000459904 DNMBPQ6XZF7 1577 aa28.05■■■□□ 2.08
LMNA-209ENST00000459904 CHD1O14646 1710 aa28.03■■■□□ 2.08
LMNA-209ENST00000459904 TARBP1Q13395 1621 aaKnown RBP28■■■□□ 2.07
LMNA-209ENST00000459904 AQRO60306 1485 aaKnown RBP eCLIP27.99■■■□□ 2.075e-13■■■■■ 43.8
LMNA-209ENST00000459904 ARHGEF11O15085 1522 aa27.97■■■□□ 2.07
LMNA-209ENST00000459904 ABCC8Q09428 1581 aa27.94■■■□□ 2.06
LMNA-209ENST00000459904 POLA1P09884 1462 aaPredicted RBP27.89■■■□□ 2.06
LMNA-209ENST00000459904 RAD54L2Q9Y4B4 1467 aa27.89■■■□□ 2.05
LMNA-209ENST00000459904 FBLN2P98095 1184 aa27.85■■■□□ 2.05
LMNA-209ENST00000459904 CYB5RLQ6IPT4 315 aa27.81■■■□□ 2.04
LMNA-209ENST00000459904 TDRD9Q8NDG6 1382 aaKnown RBP27.78■■■□□ 2.04
LMNA-209ENST00000459904 SOGA1O94964 1423 aa27.75■■■□□ 2.03
LMNA-209ENST00000459904 FGD5Q6ZNL6 1462 aa27.72■■■□□ 2.03
LMNA-209ENST00000459904 ARAP1Q96P48 1450 aa27.7■■■□□ 2.03
LMNA-209ENST00000459904 CUX1P39880 1505 aa27.7■■■□□ 2.02
LMNA-209ENST00000459904 SNAPC4Q5SXM2 1469 aa27.67■■■□□ 2.02
LMNA-209ENST00000459904 WDR97A6NE52 1622 aa27.58■■■□□ 2.01
LMNA-209ENST00000459904 TRHP20396 242 aaPredicted RBP27.56■■■□□ 2
LMNA-209ENST00000459904 PBRM1Q86U86 1689 aa27.55■■■□□ 2
LMNA-209ENST00000459904 CLASP1Q7Z460 1538 aa27.54■■■□□ 2
LMNA-209ENST00000459904 CHMP7Q8WUX9 453 aaPredicted RBP27.51■■□□□ 1.99
LMNA-209ENST00000459904 SUPT5HO00267 1087 aaKnown RBP27.5■■□□□ 1.99
LMNA-209ENST00000459904 GRIN2BQ13224 1484 aa27.47■■□□□ 1.99
LMNA-209ENST00000459904 SYNJ1O43426 1573 aa27.47■■□□□ 1.99
LMNA-209ENST00000459904 MAGI1Q96QZ7 1491 aaPredicted RBP27.45■■□□□ 1.99
LMNA-209ENST00000459904 SYNJ2O15056 1496 aa27.4■■□□□ 1.98
LMNA-209ENST00000459904 GAPVD1Q14C86 1478 aa27.4■■□□□ 1.98
LMNA-209ENST00000459904 ABCA5Q8WWZ7 1642 aa27.36■■□□□ 1.97
LMNA-209ENST00000459904 ABCA10Q8WWZ4 1543 aa27.31■■□□□ 1.96
LMNA-209ENST00000459904 ERCC6L2Q5T890 1561 aa27.26■■□□□ 1.96
LMNA-209ENST00000459904 BIVM-ERCC5R4GMW8 1640 aa27.19■■□□□ 1.94
LMNA-209ENST00000459904 ADAMTS12P58397 1594 aa27.18■■□□□ 1.94
LMNA-209ENST00000459904 CEP170Q5SW79 1584 aa27.17■■□□□ 1.94
LMNA-209ENST00000459904 GRIN2AQ12879 1464 aa27.16■■□□□ 1.94
LMNA-209ENST00000459904 TOP2BQ02880 1626 aa27.15■■□□□ 1.94
LMNA-209ENST00000459904 WRNQ14191 1432 aaPredicted RBP eCLIP27.14■■□□□ 1.93
LMNA-209ENST00000459904 NUP160Q12769 1436 aa27.03■■□□□ 1.92
LMNA-209ENST00000459904 SHROOM2Q13796 1616 aa27■■□□□ 1.91
LMNA-209ENST00000459904 FHAD1B1AJZ9 1412 aa26.99■■□□□ 1.91
LMNA-209ENST00000459904 ERICH3Q5RHP9 1530 aa26.94■■□□□ 1.9
LMNA-209ENST00000459904 KIF13AQ9H1H9 1805 aa26.88■■□□□ 1.89
LMNA-209ENST00000459904 PRG4Q92954 1404 aaPredicted RBP26.85■■□□□ 1.89
LMNA-209ENST00000459904 AEBP2Q6ZN18 517 aaPredicted RBP26.82■■□□□ 1.88
LMNA-209ENST00000459904 RUSC2Q8N2Y8 1516 aa26.8■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms