RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 NISCHQ9Y2I1 1504 aa39.63■■■■□ 3.93
COL7A1-203ENST00000459756 CCDC180Q9P1Z9 1646 aa35.38■■■■□ 3.25
COL7A1-203ENST00000459756 ABCC9O60706 1549 aa34.85■■■■□ 3.17
COL7A1-203ENST00000459756 RB1CC1Q8TDY2 1594 aa33.43■■■□□ 2.94
COL7A1-203ENST00000459756 NACADO15069 1562 aa33.34■■■□□ 2.93
COL7A1-203ENST00000459756 DCAF8L2P0C7V8 631 aa33.2■■■□□ 2.91
COL7A1-203ENST00000459756 MYO15BQ96JP2 1530 aa33.06■■■□□ 2.88
COL7A1-203ENST00000459756 ZCCHC6Q5VYS8 1495 aaKnown RBP32.95■■■□□ 2.87
COL7A1-203ENST00000459756 DCAF1Q9Y4B6 1507 aa32.81■■■□□ 2.84
COL7A1-203ENST00000459756 UNC13AQ9UPW8 1703 aa32.65■■■□□ 2.82
COL7A1-203ENST00000459756 PABPN1Q86U42 306 aaKnown RBP eCLIP32.5■■■□□ 2.792e-6■■■■□ 21.1
COL7A1-203ENST00000459756 BICRAQ9NZM4 1560 aa32.41■■■□□ 2.78
COL7A1-203ENST00000459756 DNAJC5BQ9UF47 199 aa32.23■■■□□ 2.75
COL7A1-203ENST00000459756 SCRIBQ14160 1630 aa32.22■■■□□ 2.75
COL7A1-203ENST00000459756 SHROOM4Q9ULL8 1493 aa32.1■■■□□ 2.73
COL7A1-203ENST00000459756 EIF4G1Q04637 1599 aaKnown RBP31.59■■■□□ 2.65
COL7A1-203ENST00000459756 CC2D2AQ9P2K1 1620 aa31.53■■■□□ 2.64
COL7A1-203ENST00000459756 CECR2Q9BXF3 1484 aa31.36■■■□□ 2.61
COL7A1-203ENST00000459756 SMARCA4P51532 1647 aa30.8■■■□□ 2.52
COL7A1-203ENST00000459756 NCAPD3P42695 1498 aa30.76■■■□□ 2.51
COL7A1-203ENST00000459756 BAZ1AQ9NRL2 1556 aaPredicted RBP30.75■■■□□ 2.51
COL7A1-203ENST00000459756 ATAD2BQ9ULI0 1458 aa30.71■■■□□ 2.51
COL7A1-203ENST00000459756 SMARCA2P51531 1590 aa30.68■■■□□ 2.5
COL7A1-203ENST00000459756 HMGXB3Q12766 1538 aa30.58■■■□□ 2.49
COL7A1-203ENST00000459756 PEG3Q9GZU2 1588 aa30.54■■■□□ 2.48
COL7A1-203ENST00000459756 MROH2BQ7Z745 1585 aa30.52■■■□□ 2.48
COL7A1-203ENST00000459756 BAZ1BQ9UIG0 1483 aaKnown RBP30.45■■■□□ 2.47
COL7A1-203ENST00000459756 WIZO95785 1651 aa30.17■■■□□ 2.42
COL7A1-203ENST00000459756 ERCC6Q03468 1493 aa30.08■■■□□ 2.41
COL7A1-203ENST00000459756 RSF1Q96T23 1441 aaPredicted RBP30.08■■■□□ 2.41
COL7A1-203ENST00000459756 NESP48681 1621 aa30.06■■■□□ 2.4
COL7A1-203ENST00000459756 LAMC3Q9Y6N6 1575 aa29.99■■■□□ 2.39
COL7A1-203ENST00000459756 CUX2O14529 1486 aa29.88■■■□□ 2.37
COL7A1-203ENST00000459756 TOP2AP11388 1531 aaKnown RBP29.86■■■□□ 2.37
COL7A1-203ENST00000459756 CADPSQ9ULU8 1353 aa29.84■■■□□ 2.37
COL7A1-203ENST00000459756 PDS5BQ9NTI5 1447 aa29.8■■■□□ 2.36
COL7A1-203ENST00000459756 KIF21AQ7Z4S6 1674 aa29.72■■■□□ 2.35
COL7A1-203ENST00000459756 THOC2Q8NI27 1593 aaKnown RBP29.69■■■□□ 2.34
COL7A1-203ENST00000459756 CFTRP13569 1480 aa29.6■■■□□ 2.33
COL7A1-203ENST00000459756 MRC2Q9UBG0 1479 aa29.5■■■□□ 2.31
COL7A1-203ENST00000459756 CCDC88BA6NC98 1476 aa29.49■■■□□ 2.31
COL7A1-203ENST00000459756 FANCD2Q9BXW9 1451 aa29.49■■■□□ 2.31
COL7A1-203ENST00000459756 CEP164Q9UPV0 1460 aa29.48■■■□□ 2.31
COL7A1-203ENST00000459756 WDR62O43379 1518 aa29.42■■■□□ 2.3
COL7A1-203ENST00000459756 PRDM2Q13029 1718 aa29.37■■■□□ 2.29
COL7A1-203ENST00000459756 DNAJC5Q9H3Z4 198 aa29.29■■■□□ 2.28
COL7A1-203ENST00000459756 URB2Q14146 1524 aaKnown RBP29.2■■■□□ 2.27
COL7A1-203ENST00000459756 SUPT5HO00267 1087 aaKnown RBP29.07■■■□□ 2.24
COL7A1-203ENST00000459756 ABCC8Q09428 1581 aa29.01■■■□□ 2.23
COL7A1-203ENST00000459756 TOPBP1Q92547 1522 aa28.99■■■□□ 2.23
COL7A1-203ENST00000459756 DNMBPQ6XZF7 1577 aa28.93■■■□□ 2.22
COL7A1-203ENST00000459756 IFT140Q96RY7 1462 aa28.88■■■□□ 2.21
COL7A1-203ENST00000459756 ZNF608Q9ULD9 1512 aaPredicted RBP28.75■■■□□ 2.19
COL7A1-203ENST00000459756 POLA1P09884 1462 aaPredicted RBP28.72■■■□□ 2.19
COL7A1-203ENST00000459756 TARBP1Q13395 1621 aaKnown RBP28.69■■■□□ 2.18
COL7A1-203ENST00000459756 CUX1P39880 1505 aa28.65■■■□□ 2.18
COL7A1-203ENST00000459756 EIF4G3O43432 1585 aaKnown RBP28.64■■■□□ 2.18
COL7A1-203ENST00000459756 FGD5Q6ZNL6 1462 aa28.6■■■□□ 2.17
COL7A1-203ENST00000459756 SOGA1O94964 1423 aa28.6■■■□□ 2.17
COL7A1-203ENST00000459756 OSCARQ8IYS5 282 aa28.58■■■□□ 2.17
COL7A1-203ENST00000459756 RAD54L2Q9Y4B4 1467 aa28.58■■■□□ 2.17
COL7A1-203ENST00000459756 AQRO60306 1485 aaKnown RBP eCLIP28.56■■■□□ 2.16
COL7A1-203ENST00000459756 WDR97A6NE52 1622 aa28.48■■■□□ 2.15
COL7A1-203ENST00000459756 TDRD9Q8NDG6 1382 aaKnown RBP28.46■■■□□ 2.15
COL7A1-203ENST00000459756 WRNQ14191 1432 aaPredicted RBP eCLIP28.37■■■□□ 2.13
COL7A1-203ENST00000459756 TOP2BQ02880 1626 aa28.35■■■□□ 2.13
COL7A1-203ENST00000459756 BIVM-ERCC5R4GMW8 1640 aa28.34■■■□□ 2.13
COL7A1-203ENST00000459756 CHD1O14646 1710 aa28.33■■■□□ 2.13
COL7A1-203ENST00000459756 ABCA10Q8WWZ4 1543 aa28.33■■■□□ 2.13
COL7A1-203ENST00000459756 GRIN2BQ13224 1484 aa28.31■■■□□ 2.12
COL7A1-203ENST00000459756 SYNJ1O43426 1573 aa28.31■■■□□ 2.12
COL7A1-203ENST00000459756 SNAPC4Q5SXM2 1469 aa28.29■■■□□ 2.12
COL7A1-203ENST00000459756 FBLN2P98095 1184 aa28.27■■■□□ 2.12
COL7A1-203ENST00000459756 GAPVD1Q14C86 1478 aa28.27■■■□□ 2.12
COL7A1-203ENST00000459756 MAGI1Q96QZ7 1491 aaPredicted RBP28.27■■■□□ 2.12
COL7A1-203ENST00000459756 ABCA5Q8WWZ7 1642 aa28.23■■■□□ 2.11
COL7A1-203ENST00000459756 PBRM1Q86U86 1689 aa28.22■■■□□ 2.11
COL7A1-203ENST00000459756 CHMP7Q8WUX9 453 aaPredicted RBP28.17■■■□□ 2.1
COL7A1-203ENST00000459756 TRIM41Q8WV44 630 aa28.17■■■□□ 2.1
COL7A1-203ENST00000459756 SYNJ2O15056 1496 aa28.16■■■□□ 2.1
COL7A1-203ENST00000459756 RIMBP3CA6NJZ7 1639 aa28.14■■■□□ 2.09
COL7A1-203ENST00000459756 RIMBP3BA6NNM3 1639 aa28.14■■■□□ 2.09
COL7A1-203ENST00000459756 RIMBP3Q9UFD9 1639 aa28.14■■■□□ 2.09
COL7A1-203ENST00000459756 ARHGEF11O15085 1522 aa28.11■■■□□ 2.09
COL7A1-203ENST00000459756 CLASP1Q7Z460 1538 aa28.03■■■□□ 2.08
COL7A1-203ENST00000459756 ERICH3Q5RHP9 1530 aa27.99■■■□□ 2.07
COL7A1-203ENST00000459756 ADAMTS12P58397 1594 aa27.99■■■□□ 2.07
COL7A1-203ENST00000459756 GRIN2AQ12879 1464 aa27.94■■■□□ 2.06
COL7A1-203ENST00000459756 FHAD1B1AJZ9 1412 aa27.93■■■□□ 2.06
COL7A1-203ENST00000459756 CYB5RLQ6IPT4 315 aa27.86■■■□□ 2.05
COL7A1-203ENST00000459756 ARAP1Q96P48 1450 aa27.86■■■□□ 2.05
COL7A1-203ENST00000459756 NUP160Q12769 1436 aa27.83■■■□□ 2.05
COL7A1-203ENST00000459756 KIF27Q86VH2 1401 aa27.82■■■□□ 2.04
COL7A1-203ENST00000459756 CEP170Q5SW79 1584 aa27.8■■■□□ 2.04
COL7A1-203ENST00000459756 IGF1RP08069 1367 aa27.73■■■□□ 2.03
COL7A1-203ENST00000459756 CUL7Q14999 1698 aa27.68■■■□□ 2.02
COL7A1-203ENST00000459756 SHROOM2Q13796 1616 aa27.65■■■□□ 2.02
COL7A1-203ENST00000459756 ERCC6L2Q5T890 1561 aa27.59■■■□□ 2.01
COL7A1-203ENST00000459756 RUSC2Q8N2Y8 1516 aa27.58■■■□□ 2.01
COL7A1-203ENST00000459756 CARMIL1Q5VZK9 1371 aa27.55■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms