RNA–Protein interactions for RNA: ENST00000459670.2

NEDD9-205, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 614 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-205ENST00000459670 NISCHQ9Y2I1 1504 aa24.77■■□□□ 1.56
NEDD9-205ENST00000459670 CCDC180Q9P1Z9 1646 aa21.88■■□□□ 1.09
NEDD9-205ENST00000459670 ZCCHC6Q5VYS8 1495 aaKnown RBP20.84■□□□□ 0.93
NEDD9-205ENST00000459670 DCAF1Q9Y4B6 1507 aa20.62■□□□□ 0.89
NEDD9-205ENST00000459670 ABCC9O60706 1549 aa20.53■□□□□ 0.88
NEDD9-205ENST00000459670 MYO15BQ96JP2 1530 aa20.47■□□□□ 0.87
NEDD9-205ENST00000459670 NACADO15069 1562 aa20.29■□□□□ 0.84
NEDD9-205ENST00000459670 RB1CC1Q8TDY2 1594 aa20.12■□□□□ 0.81
NEDD9-205ENST00000459670 UNC13AQ9UPW8 1703 aa19.93■□□□□ 0.78
NEDD9-205ENST00000459670 DCAF8L2P0C7V8 631 aa19.92■□□□□ 0.78
NEDD9-205ENST00000459670 SCRIBQ14160 1630 aa19.87■□□□□ 0.77
NEDD9-205ENST00000459670 SHROOM4Q9ULL8 1493 aa19.68■□□□□ 0.74
NEDD9-205ENST00000459670 BICRAQ9NZM4 1560 aa19.66■□□□□ 0.74
NEDD9-205ENST00000459670 CECR2Q9BXF3 1484 aa19.2■□□□□ 0.66
NEDD9-205ENST00000459670 PABPN1Q86U42 306 aaKnown RBP eCLIP19.15■□□□□ 0.66
NEDD9-205ENST00000459670 SMARCA4P51532 1647 aa19.14■□□□□ 0.66
NEDD9-205ENST00000459670 BAZ1AQ9NRL2 1556 aaPredicted RBP19.13■□□□□ 0.65
NEDD9-205ENST00000459670 MROH2BQ7Z745 1585 aa19.1■□□□□ 0.65
NEDD9-205ENST00000459670 RSF1Q96T23 1441 aaPredicted RBP19.07■□□□□ 0.64
NEDD9-205ENST00000459670 PEG3Q9GZU2 1588 aa19.02■□□□□ 0.64
NEDD9-205ENST00000459670 EIF4G1Q04637 1599 aaKnown RBP18.98■□□□□ 0.63
NEDD9-205ENST00000459670 WIZO95785 1651 aa18.96■□□□□ 0.63
NEDD9-205ENST00000459670 SMARCA2P51531 1590 aa18.8■□□□□ 0.6
NEDD9-205ENST00000459670 ATAD2BQ9ULI0 1458 aa18.79■□□□□ 0.6
NEDD9-205ENST00000459670 TOP2AP11388 1531 aaKnown RBP18.79■□□□□ 0.6
NEDD9-205ENST00000459670 HMGXB3Q12766 1538 aa18.74■□□□□ 0.59
NEDD9-205ENST00000459670 SUPT5HO00267 1087 aaKnown RBP18.73■□□□□ 0.59
NEDD9-205ENST00000459670 CC2D2AQ9P2K1 1620 aa18.73■□□□□ 0.59
NEDD9-205ENST00000459670 NCAPD3P42695 1498 aa18.69■□□□□ 0.58
NEDD9-205ENST00000459670 BAZ1BQ9UIG0 1483 aaKnown RBP18.6■□□□□ 0.57
NEDD9-205ENST00000459670 CCDC88BA6NC98 1476 aa18.48■□□□□ 0.55
NEDD9-205ENST00000459670 PRDM2Q13029 1718 aa18.35■□□□□ 0.53
NEDD9-205ENST00000459670 DNAJC5BQ9UF47 199 aa18.27■□□□□ 0.52
NEDD9-205ENST00000459670 CFTRP13569 1480 aa18.21■□□□□ 0.51
NEDD9-205ENST00000459670 LAMC3Q9Y6N6 1575 aa18.13■□□□□ 0.49
NEDD9-205ENST00000459670 CADPSQ9ULU8 1353 aa18.08■□□□□ 0.49
NEDD9-205ENST00000459670 ABCC8Q09428 1581 aa18.04■□□□□ 0.48
NEDD9-205ENST00000459670 NESP48681 1621 aa18.03■□□□□ 0.48
NEDD9-205ENST00000459670 CHIC1Q5VXU3 224 aa18.01■□□□□ 0.47
NEDD9-205ENST00000459670 BIVM-ERCC5R4GMW8 1640 aa18■□□□□ 0.47
NEDD9-205ENST00000459670 KIF21AQ7Z4S6 1674 aa17.97■□□□□ 0.47
NEDD9-205ENST00000459670 SYNJ1O43426 1573 aa17.97■□□□□ 0.47
NEDD9-205ENST00000459670 TOP2BQ02880 1626 aa17.94■□□□□ 0.46
NEDD9-205ENST00000459670 FANCD2Q9BXW9 1451 aa17.91■□□□□ 0.46
NEDD9-205ENST00000459670 CUX1P39880 1505 aa17.9■□□□□ 0.46
NEDD9-205ENST00000459670 WRNQ14191 1432 aaPredicted RBP eCLIP17.89■□□□□ 0.45
NEDD9-205ENST00000459670 DNMBPQ6XZF7 1577 aa17.83■□□□□ 0.44
NEDD9-205ENST00000459670 CEP164Q9UPV0 1460 aa17.82■□□□□ 0.44
NEDD9-205ENST00000459670 PDS5BQ9NTI5 1447 aa17.81■□□□□ 0.44
NEDD9-205ENST00000459670 THOC2Q8NI27 1593 aaKnown RBP17.79■□□□□ 0.44
NEDD9-205ENST00000459670 URB2Q14146 1524 aaKnown RBP17.78■□□□□ 0.44
NEDD9-205ENST00000459670 TOPBP1Q92547 1522 aa17.75■□□□□ 0.43
NEDD9-205ENST00000459670 WDR97A6NE52 1622 aa17.74■□□□□ 0.43
NEDD9-205ENST00000459670 WDR62O43379 1518 aa17.72■□□□□ 0.43
NEDD9-205ENST00000459670 MRC2Q9UBG0 1479 aa17.69■□□□□ 0.42
NEDD9-205ENST00000459670 FGD5Q6ZNL6 1462 aa17.67■□□□□ 0.42
NEDD9-205ENST00000459670 TRIM41Q8WV44 630 aa17.66■□□□□ 0.42
NEDD9-205ENST00000459670 POLA1P09884 1462 aaPredicted RBP17.65■□□□□ 0.42
NEDD9-205ENST00000459670 TARBP1Q13395 1621 aaKnown RBP17.62■□□□□ 0.41
NEDD9-205ENST00000459670 SOGA1O94964 1423 aa17.58■□□□□ 0.41
NEDD9-205ENST00000459670 ABCA10Q8WWZ4 1543 aa17.57■□□□□ 0.4
NEDD9-205ENST00000459670 RUSC2Q8N2Y8 1516 aa17.57■□□□□ 0.4
NEDD9-205ENST00000459670 CUX2O14529 1486 aa17.56■□□□□ 0.4
NEDD9-205ENST00000459670 ABCA5Q8WWZ7 1642 aa17.56■□□□□ 0.4
NEDD9-205ENST00000459670 ERCC6Q03468 1493 aa17.55■□□□□ 0.4
NEDD9-205ENST00000459670 EEA1Q15075 1411 aa17.55■□□□□ 0.4
NEDD9-205ENST00000459670 RAD54L2Q9Y4B4 1467 aa17.5■□□□□ 0.39
NEDD9-205ENST00000459670 KIF21BO75037 1637 aa17.47■□□□□ 0.39
NEDD9-205ENST00000459670 PBRM1Q86U86 1689 aa17.43■□□□□ 0.38
NEDD9-205ENST00000459670 IFT140Q96RY7 1462 aa17.43■□□□□ 0.38
NEDD9-205ENST00000459670 KIF27Q86VH2 1401 aa17.42■□□□□ 0.38
NEDD9-205ENST00000459670 PRXQ9BXM0 1461 aa17.39■□□□□ 0.37
NEDD9-205ENST00000459670 EIF4G3O43432 1585 aaKnown RBP17.39■□□□□ 0.37
NEDD9-205ENST00000459670 ERICH3Q5RHP9 1530 aa17.37■□□□□ 0.37
NEDD9-205ENST00000459670 CUL7Q14999 1698 aa17.37■□□□□ 0.37
NEDD9-205ENST00000459670 ZNF608Q9ULD9 1512 aaPredicted RBP17.34■□□□□ 0.37
NEDD9-205ENST00000459670 AEBP2Q6ZN18 517 aaPredicted RBP17.32■□□□□ 0.36
NEDD9-205ENST00000459670 GAPVD1Q14C86 1478 aa17.31■□□□□ 0.36
NEDD9-205ENST00000459670 IGF1RP08069 1367 aa17.3■□□□□ 0.36
NEDD9-205ENST00000459670 ADAMTS12P58397 1594 aa17.3■□□□□ 0.36
NEDD9-205ENST00000459670 CSRNP3Q8WYN3 585 aa17.29■□□□□ 0.36
NEDD9-205ENST00000459670 GOLGA3Q08378 1498 aa17.27■□□□□ 0.36
NEDD9-205ENST00000459670 RAPGEF2Q9Y4G8 1499 aa17.27■□□□□ 0.36
NEDD9-205ENST00000459670 FAM9AQ8IZU1 332 aaPredicted RBP17.25■□□□□ 0.35
NEDD9-205ENST00000459670 TDRD9Q8NDG6 1382 aaKnown RBP17.25■□□□□ 0.35
NEDD9-205ENST00000459670 AQRO60306 1485 aaKnown RBP eCLIP17.24■□□□□ 0.35
NEDD9-205ENST00000459670 GRIN2BQ13224 1484 aa17.24■□□□□ 0.35
NEDD9-205ENST00000459670 CTTNBP2Q8WZ74 1663 aa17.2■□□□□ 0.34
NEDD9-205ENST00000459670 LOC105371045A0A1W2PR82 267 aa17.18■□□□□ 0.34
NEDD9-205ENST00000459670 MAGI1Q96QZ7 1491 aaPredicted RBP17.17■□□□□ 0.34
NEDD9-205ENST00000459670 CARMIL1Q5VZK9 1371 aa17.16■□□□□ 0.34
NEDD9-205ENST00000459670 TNIKQ9UKE5 1360 aa17.15■□□□□ 0.34
NEDD9-205ENST00000459670 SNAPC4Q5SXM2 1469 aa17.15■□□□□ 0.34
NEDD9-205ENST00000459670 FHAD1B1AJZ9 1412 aa17.13■□□□□ 0.33
NEDD9-205ENST00000459670 CHD1O14646 1710 aa17.07■□□□□ 0.32
NEDD9-205ENST00000459670 SYNJ2O15056 1496 aa17.07■□□□□ 0.32
NEDD9-205ENST00000459670 GRIN2AQ12879 1464 aa17.06■□□□□ 0.32
NEDD9-205ENST00000459670 CEP162Q5TB80 1403 aa17.04■□□□□ 0.32
NEDD9-205ENST00000459670 CEP170Q5SW79 1584 aa17.03■□□□□ 0.32
NEDD9-205ENST00000459670 NUP160Q12769 1436 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms