RNA–Protein interactions for RNA: ENST00000459667.1

VARS-218, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 793 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-218ENST00000459667 NISCHQ9Y2I1 1504 aa50.61■■■■■ 5.69
VARS-218ENST00000459667 CCDC180Q9P1Z9 1646 aa45.08■■■■■ 4.81
VARS-218ENST00000459667 ABCC9O60706 1549 aa44.2■■■■■ 4.67
VARS-218ENST00000459667 RB1CC1Q8TDY2 1594 aa42.48■■■■■ 4.39
VARS-218ENST00000459667 NACADO15069 1562 aa42.39■■■■■ 4.38
VARS-218ENST00000459667 DCAF8L2P0C7V8 631 aa42.32■■■■■ 4.37
VARS-218ENST00000459667 ZCCHC6Q5VYS8 1495 aaKnown RBP42.15■■■■■ 4.34
VARS-218ENST00000459667 MYO15BQ96JP2 1530 aa42.09■■■■■ 4.33
VARS-218ENST00000459667 DCAF1Q9Y4B6 1507 aa41.86■■■■■ 4.29
VARS-218ENST00000459667 UNC13AQ9UPW8 1703 aa41.54■■■■■ 4.24
VARS-218ENST00000459667 PABPN1Q86U42 306 aaKnown RBP eCLIP41.26■■■■■ 4.2
VARS-218ENST00000459667 BICRAQ9NZM4 1560 aa41.19■■■■■ 4.18
VARS-218ENST00000459667 SCRIBQ14160 1630 aa41.14■■■■■ 4.18
VARS-218ENST00000459667 SHROOM4Q9ULL8 1493 aa40.75■■■■■ 4.11
VARS-218ENST00000459667 DNAJC5BQ9UF47 199 aa40.62■■■■■ 4.09
VARS-218ENST00000459667 EIF4G1Q04637 1599 aaKnown RBP40.12■■■■■ 4.01
VARS-218ENST00000459667 CC2D2AQ9P2K1 1620 aa39.98■■■■□ 3.99
VARS-218ENST00000459667 CECR2Q9BXF3 1484 aa39.73■■■■□ 3.95
VARS-218ENST00000459667 SMARCA4P51532 1647 aa39.32■■■■□ 3.88
VARS-218ENST00000459667 BAZ1AQ9NRL2 1556 aaPredicted RBP39.25■■■■□ 3.87
VARS-218ENST00000459667 ATAD2BQ9ULI0 1458 aa39.11■■■■□ 3.85
VARS-218ENST00000459667 NCAPD3P42695 1498 aa39.09■■■■□ 3.85
VARS-218ENST00000459667 SMARCA2P51531 1590 aa39.08■■■■□ 3.85
VARS-218ENST00000459667 MROH2BQ7Z745 1585 aa39.01■■■■□ 3.84
VARS-218ENST00000459667 HMGXB3Q12766 1538 aa38.93■■■■□ 3.82
VARS-218ENST00000459667 PEG3Q9GZU2 1588 aa38.92■■■■□ 3.82
VARS-218ENST00000459667 BAZ1BQ9UIG0 1483 aaKnown RBP38.8■■■■□ 3.8
VARS-218ENST00000459667 WIZO95785 1651 aa38.6■■■■□ 3.77
VARS-218ENST00000459667 RSF1Q96T23 1441 aaPredicted RBP38.51■■■■□ 3.76
VARS-218ENST00000459667 NESP48681 1621 aa38.22■■■■□ 3.71
VARS-218ENST00000459667 TOP2AP11388 1531 aaKnown RBP38.18■■■■□ 3.7
VARS-218ENST00000459667 ERCC6Q03468 1493 aa38.12■■■■□ 3.69
VARS-218ENST00000459667 LAMC3Q9Y6N6 1575 aa38.11■■■■□ 3.69
VARS-218ENST00000459667 CADPSQ9ULU8 1353 aa37.95■■■■□ 3.67
VARS-218ENST00000459667 PDS5BQ9NTI5 1447 aa37.84■■■■□ 3.65
VARS-218ENST00000459667 KIF21AQ7Z4S6 1674 aa37.79■■■■□ 3.64
VARS-218ENST00000459667 CUX2O14529 1486 aa37.75■■■■□ 3.63
VARS-218ENST00000459667 CCDC88BA6NC98 1476 aa37.71■■■■□ 3.63
VARS-218ENST00000459667 CFTRP13569 1480 aa37.71■■■■□ 3.63
VARS-218ENST00000459667 THOC2Q8NI27 1593 aaKnown RBP37.68■■■■□ 3.62
VARS-218ENST00000459667 FANCD2Q9BXW9 1451 aa37.53■■■■□ 3.6
VARS-218ENST00000459667 CEP164Q9UPV0 1460 aa37.52■■■■□ 3.6
VARS-218ENST00000459667 MRC2Q9UBG0 1479 aa37.48■■■■□ 3.59
VARS-218ENST00000459667 PRDM2Q13029 1718 aa37.47■■■■□ 3.59
VARS-218ENST00000459667 SUPT5HO00267 1087 aaKnown RBP37.44■■■■□ 3.58
VARS-218ENST00000459667 WDR62O43379 1518 aa37.36■■■■□ 3.57
VARS-218ENST00000459667 URB2Q14146 1524 aaKnown RBP37.17■■■■□ 3.54
VARS-218ENST00000459667 TOPBP1Q92547 1522 aa36.93■■■■□ 3.5
VARS-218ENST00000459667 ABCC8Q09428 1581 aa36.91■■■■□ 3.5
VARS-218ENST00000459667 DNMBPQ6XZF7 1577 aa36.89■■■■□ 3.5
VARS-218ENST00000459667 IFT140Q96RY7 1462 aa36.73■■■■□ 3.47
VARS-218ENST00000459667 DNAJC5Q9H3Z4 198 aa36.68■■■■□ 3.46
VARS-218ENST00000459667 POLA1P09884 1462 aaPredicted RBP36.61■■■■□ 3.45
VARS-218ENST00000459667 CUX1P39880 1505 aa36.6■■■■□ 3.45
VARS-218ENST00000459667 ZNF608Q9ULD9 1512 aaPredicted RBP36.56■■■■□ 3.44
VARS-218ENST00000459667 TARBP1Q13395 1621 aaKnown RBP36.53■■■■□ 3.44
VARS-218ENST00000459667 FGD5Q6ZNL6 1462 aa36.51■■■■□ 3.44
VARS-218ENST00000459667 EIF4G3O43432 1585 aaKnown RBP36.45■■■■□ 3.43
VARS-218ENST00000459667 RAD54L2Q9Y4B4 1467 aa36.44■■■■□ 3.42
VARS-218ENST00000459667 SOGA1O94964 1423 aa36.43■■■■□ 3.42
VARS-218ENST00000459667 AQRO60306 1485 aaKnown RBP eCLIP36.34■■■■□ 3.413e-8■■■■■ 30.9
VARS-218ENST00000459667 WRNQ14191 1432 aaPredicted RBP eCLIP36.33■■■■□ 3.41
VARS-218ENST00000459667 TOP2BQ02880 1626 aa36.27■■■■□ 3.4
VARS-218ENST00000459667 BIVM-ERCC5R4GMW8 1640 aa36.27■■■■□ 3.4
VARS-218ENST00000459667 SYNJ1O43426 1573 aa36.26■■■■□ 3.39
VARS-218ENST00000459667 WDR97A6NE52 1622 aa36.25■■■■□ 3.39
VARS-218ENST00000459667 TDRD9Q8NDG6 1382 aaKnown RBP36.25■■■■□ 3.39
VARS-218ENST00000459667 ABCA10Q8WWZ4 1543 aa36.13■■■■□ 3.38
VARS-218ENST00000459667 OSCARQ8IYS5 282 aa36.13■■■■□ 3.37
VARS-218ENST00000459667 GRIN2BQ13224 1484 aa36.04■■■■□ 3.36
VARS-218ENST00000459667 ABCA5Q8WWZ7 1642 aa36.02■■■■□ 3.36
VARS-218ENST00000459667 GAPVD1Q14C86 1478 aa36.02■■■■□ 3.36
VARS-218ENST00000459667 SNAPC4Q5SXM2 1469 aa36.02■■■■□ 3.36
VARS-218ENST00000459667 CHD1O14646 1710 aa36.02■■■■□ 3.36
VARS-218ENST00000459667 PBRM1Q86U86 1689 aa36■■■■□ 3.35
VARS-218ENST00000459667 MAGI1Q96QZ7 1491 aaPredicted RBP35.96■■■■□ 3.35
VARS-218ENST00000459667 FBLN2P98095 1184 aa35.92■■■■□ 3.34
VARS-218ENST00000459667 SYNJ2O15056 1496 aa35.82■■■■□ 3.32
VARS-218ENST00000459667 CHMP7Q8WUX9 453 aaPredicted RBP35.8■■■■□ 3.32
VARS-218ENST00000459667 ERICH3Q5RHP9 1530 aa35.71■■■■□ 3.31
VARS-218ENST00000459667 ADAMTS12P58397 1594 aa35.7■■■■□ 3.31
VARS-218ENST00000459667 RIMBP3CA6NJZ7 1639 aa35.61■■■■□ 3.29
VARS-218ENST00000459667 RIMBP3BA6NNM3 1639 aa35.61■■■■□ 3.29
VARS-218ENST00000459667 RIMBP3Q9UFD9 1639 aa35.61■■■■□ 3.29
VARS-218ENST00000459667 FHAD1B1AJZ9 1412 aa35.6■■■■□ 3.29
VARS-218ENST00000459667 CLASP1Q7Z460 1538 aa35.6■■■■□ 3.29
VARS-218ENST00000459667 ARHGEF11O15085 1522 aa35.59■■■■□ 3.29
VARS-218ENST00000459667 GRIN2AQ12879 1464 aa35.58■■■■□ 3.29
VARS-218ENST00000459667 KIF27Q86VH2 1401 aa35.57■■■■□ 3.29
VARS-218ENST00000459667 TRIM41Q8WV44 630 aa35.47■■■■□ 3.27
VARS-218ENST00000459667 CEP170Q5SW79 1584 aa35.42■■■■□ 3.26
VARS-218ENST00000459667 NUP160Q12769 1436 aa35.42■■■■□ 3.26
VARS-218ENST00000459667 IGF1RP08069 1367 aa35.41■■■■□ 3.26
VARS-218ENST00000459667 CUL7Q14999 1698 aa35.39■■■■□ 3.26
VARS-218ENST00000459667 ARAP1Q96P48 1450 aa35.29■■■■□ 3.24
VARS-218ENST00000459667 CYB5RLQ6IPT4 315 aa35.22■■■■□ 3.23
VARS-218ENST00000459667 CARMIL1Q5VZK9 1371 aa35.22■■■■□ 3.23
VARS-218ENST00000459667 RUSC2Q8N2Y8 1516 aa35.21■■■■□ 3.23
VARS-218ENST00000459667 SHROOM2Q13796 1616 aa35.18■■■■□ 3.22
VARS-218ENST00000459667 ERCC6L2Q5T890 1561 aa35.1■■■■□ 3.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms