RNA–Protein interactions for RNA: ENST00000459274.1

RNU1-88P-201, Transcript of RNA, U1 small nuclear 88, pseudogene, humanhuman

BASIC

Gene RNU1-88P, Length 128 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU1-88P-201ENST00000459274 POTEDQ86YR6 584 aa13.25□□□□□ -0.29
RNU1-88P-201ENST00000459274 NISCHQ9Y2I1 1504 aa13.03□□□□□ -0.32
RNU1-88P-201ENST00000459274 AEBP2Q6ZN18 517 aaPredicted RBP12.65□□□□□ -0.38
RNU1-88P-201ENST00000459274 CHIC1Q5VXU3 224 aa11.83□□□□□ -0.52
RNU1-88P-201ENST00000459274 CCDC180Q9P1Z9 1646 aa11.49□□□□□ -0.57
RNU1-88P-201ENST00000459274 SENP3Q9H4L4 574 aaPredicted RBP11.11□□□□□ -0.63
RNU1-88P-201ENST00000459274 DCAF8L2P0C7V8 631 aa11.01□□□□□ -0.65
RNU1-88P-201ENST00000459274 ABCC9O60706 1549 aa10.89□□□□□ -0.67
RNU1-88P-201ENST00000459274 ZCCHC6Q5VYS8 1495 aaKnown RBP10.88□□□□□ -0.67
RNU1-88P-201ENST00000459274 DCAF1Q9Y4B6 1507 aa10.79□□□□□ -0.68
RNU1-88P-201ENST00000459274 NACADO15069 1562 aa10.73□□□□□ -0.69
RNU1-88P-201ENST00000459274 MYO15BQ96JP2 1530 aa10.71□□□□□ -0.69
RNU1-88P-201ENST00000459274 RB1CC1Q8TDY2 1594 aa10.7□□□□□ -0.7
RNU1-88P-201ENST00000459274 PHF23Q9BUL5 403 aaPredicted RBP10.67□□□□□ -0.7
RNU1-88P-201ENST00000459274 SHROOM4Q9ULL8 1493 aa10.6□□□□□ -0.71
RNU1-88P-201ENST00000459274 MSH5O43196 834 aa10.58□□□□□ -0.72
RNU1-88P-201ENST00000459274 FOXD1Q16676 465 aa10.53□□□□□ -0.72
RNU1-88P-201ENST00000459274 SCRIBQ14160 1630 aa10.5□□□□□ -0.73
RNU1-88P-201ENST00000459274 UNC13AQ9UPW8 1703 aa10.39□□□□□ -0.75
RNU1-88P-201ENST00000459274 PABPN1Q86U42 306 aaKnown RBP eCLIP10.25□□□□□ -0.77
RNU1-88P-201ENST00000459274 SUPT5HO00267 1087 aaKnown RBP10.24□□□□□ -0.77
RNU1-88P-201ENST00000459274 BICRAQ9NZM4 1560 aa10.18□□□□□ -0.78
RNU1-88P-201ENST00000459274 BAZ1AQ9NRL2 1556 aaPredicted RBP10.14□□□□□ -0.79
RNU1-88P-201ENST00000459274 CACNB1Q02641 598 aaPredicted RBP10.08□□□□□ -0.8
RNU1-88P-201ENST00000459274 SMARCA4P51532 1647 aa10.06□□□□□ -0.8
RNU1-88P-201ENST00000459274 CECR2Q9BXF3 1484 aa10.05□□□□□ -0.8
RNU1-88P-201ENST00000459274 POTEHQ6S545 545 aa10.05□□□□□ -0.8
RNU1-88P-201ENST00000459274 RSF1Q96T23 1441 aaPredicted RBP10.04□□□□□ -0.8
RNU1-88P-201ENST00000459274 MROH2BQ7Z745 1585 aa10.01□□□□□ -0.81
RNU1-88P-201ENST00000459274 SMARCA2P51531 1590 aa9.99□□□□□ -0.81
RNU1-88P-201ENST00000459274 WIZO95785 1651 aa9.98□□□□□ -0.81
RNU1-88P-201ENST00000459274 EIF4G1Q04637 1599 aaKnown RBP9.97□□□□□ -0.81
RNU1-88P-201ENST00000459274 BAZ1BQ9UIG0 1483 aaKnown RBP9.91□□□□□ -0.82
RNU1-88P-201ENST00000459274 PEG3Q9GZU2 1588 aa9.9□□□□□ -0.82
RNU1-88P-201ENST00000459274 TOP2AP11388 1531 aaKnown RBP9.89□□□□□ -0.83
RNU1-88P-201ENST00000459274 ATAD2BQ9ULI0 1458 aa9.88□□□□□ -0.83
RNU1-88P-201ENST00000459274 CC2D2AQ9P2K1 1620 aa9.86□□□□□ -0.83
RNU1-88P-201ENST00000459274 HMGXB3Q12766 1538 aa9.84□□□□□ -0.83
RNU1-88P-201ENST00000459274 NCAPD3P42695 1498 aa9.84□□□□□ -0.83
RNU1-88P-201ENST00000459274 CCDC88BA6NC98 1476 aa9.76□□□□□ -0.85
RNU1-88P-201ENST00000459274 TRIM41Q8WV44 630 aa9.69□□□□□ -0.86
RNU1-88P-201ENST00000459274 PRDM2Q13029 1718 aa9.66□□□□□ -0.86
RNU1-88P-201ENST00000459274 CADPSQ9ULU8 1353 aa9.62□□□□□ -0.87
RNU1-88P-201ENST00000459274 LAMC3Q9Y6N6 1575 aa9.59□□□□□ -0.87
RNU1-88P-201ENST00000459274 CFTRP13569 1480 aa9.59□□□□□ -0.87
RNU1-88P-201ENST00000459274 PDS5BQ9NTI5 1447 aa9.56□□□□□ -0.88
RNU1-88P-201ENST00000459274 DNAJC5BQ9UF47 199 aa9.55□□□□□ -0.88
RNU1-88P-201ENST00000459274 WRNQ14191 1432 aaPredicted RBP eCLIP9.55□□□□□ -0.88
RNU1-88P-201ENST00000459274 ABCC8Q09428 1581 aa9.51□□□□□ -0.89
RNU1-88P-201ENST00000459274 FANCD2Q9BXW9 1451 aa9.51□□□□□ -0.89
RNU1-88P-201ENST00000459274 CEP164Q9UPV0 1460 aa9.5□□□□□ -0.89
RNU1-88P-201ENST00000459274 ERCC6Q03468 1493 aa9.48□□□□□ -0.89
RNU1-88P-201ENST00000459274 NESP48681 1621 aa9.47□□□□□ -0.89
RNU1-88P-201ENST00000459274 TOP2BQ02880 1626 aa9.45□□□□□ -0.9
RNU1-88P-201ENST00000459274 FAM9AQ8IZU1 332 aaPredicted RBP9.45□□□□□ -0.9
RNU1-88P-201ENST00000459274 EEA1Q15075 1411 aa9.44□□□□□ -0.9
RNU1-88P-201ENST00000459274 BIVM-ERCC5R4GMW8 1640 aa9.44□□□□□ -0.9
RNU1-88P-201ENST00000459274 KIF21AQ7Z4S6 1674 aa9.44□□□□□ -0.9
RNU1-88P-201ENST00000459274 DNMBPQ6XZF7 1577 aa9.41□□□□□ -0.9
RNU1-88P-201ENST00000459274 PIAS4Q8N2W9 510 aaPredicted RBP9.41□□□□□ -0.9
RNU1-88P-201ENST00000459274 SYNJ1O43426 1573 aa9.41□□□□□ -0.9
RNU1-88P-201ENST00000459274 CUX1P39880 1505 aa9.38□□□□□ -0.91
RNU1-88P-201ENST00000459274 MRC2Q9UBG0 1479 aa9.38□□□□□ -0.91
RNU1-88P-201ENST00000459274 CSRNP3Q8WYN3 585 aa9.37□□□□□ -0.91
RNU1-88P-201ENST00000459274 TOPBP1Q92547 1522 aa9.36□□□□□ -0.91
RNU1-88P-201ENST00000459274 KIF27Q86VH2 1401 aa9.36□□□□□ -0.91
RNU1-88P-201ENST00000459274 SOGA1O94964 1423 aa9.35□□□□□ -0.91
RNU1-88P-201ENST00000459274 FGD5Q6ZNL6 1462 aa9.34□□□□□ -0.91
RNU1-88P-201ENST00000459274 UBTFP17480 764 aaKnown RBP9.34□□□□□ -0.91
RNU1-88P-201ENST00000459274 EHMT2Q96KQ7 1210 aa9.32□□□□□ -0.92
RNU1-88P-201ENST00000459274 URB2Q14146 1524 aaKnown RBP9.31□□□□□ -0.92
RNU1-88P-201ENST00000459274 CUX2O14529 1486 aa9.3□□□□□ -0.92
RNU1-88P-201ENST00000459274 POLA1P09884 1462 aaPredicted RBP9.29□□□□□ -0.92
RNU1-88P-201ENST00000459274 WDR62O43379 1518 aa9.28□□□□□ -0.92
RNU1-88P-201ENST00000459274 LOC105371045A0A1W2PR82 267 aa9.28□□□□□ -0.92
RNU1-88P-201ENST00000459274 IFT140Q96RY7 1462 aa9.27□□□□□ -0.93
RNU1-88P-201ENST00000459274 ABCA10Q8WWZ4 1543 aa9.26□□□□□ -0.93
RNU1-88P-201ENST00000459274 GOLGA3Q08378 1498 aa9.26□□□□□ -0.93
RNU1-88P-201ENST00000459274 WDR97A6NE52 1622 aa9.24□□□□□ -0.93
RNU1-88P-201ENST00000459274 RAD54L2Q9Y4B4 1467 aa9.24□□□□□ -0.93
RNU1-88P-201ENST00000459274 THOC2Q8NI27 1593 aaKnown RBP9.24□□□□□ -0.93
RNU1-88P-201ENST00000459274 KIF21BO75037 1637 aa9.23□□□□□ -0.93
RNU1-88P-201ENST00000459274 CUL7Q14999 1698 aa9.23□□□□□ -0.93
RNU1-88P-201ENST00000459274 GAPVD1Q14C86 1478 aa9.23□□□□□ -0.93
RNU1-88P-201ENST00000459274 RUSC2Q8N2Y8 1516 aa9.22□□□□□ -0.93
RNU1-88P-201ENST00000459274 TDRD9Q8NDG6 1382 aaKnown RBP9.22□□□□□ -0.93
RNU1-88P-201ENST00000459274 CARMIL1Q5VZK9 1371 aa9.21□□□□□ -0.94
RNU1-88P-201ENST00000459274 ERICH3Q5RHP9 1530 aa9.21□□□□□ -0.94
RNU1-88P-201ENST00000459274 PBRM1Q86U86 1689 aa9.2□□□□□ -0.94
RNU1-88P-201ENST00000459274 RAPGEF2Q9Y4G8 1499 aa9.2□□□□□ -0.94
RNU1-88P-201ENST00000459274 TARBP1Q13395 1621 aaKnown RBP9.2□□□□□ -0.94
RNU1-88P-201ENST00000459274 TNIKQ9UKE5 1360 aa9.19□□□□□ -0.94
RNU1-88P-201ENST00000459274 IGF1RP08069 1367 aa9.18□□□□□ -0.94
RNU1-88P-201ENST00000459274 APLP2Q06481 763 aa9.18□□□□□ -0.94
RNU1-88P-201ENST00000459274 GRIN2BQ13224 1484 aa9.18□□□□□ -0.94
RNU1-88P-201ENST00000459274 ABCA5Q8WWZ7 1642 aa9.16□□□□□ -0.94
RNU1-88P-201ENST00000459274 RANGAP1P46060 587 aaPredicted RBP9.16□□□□□ -0.94
RNU1-88P-201ENST00000459274 FBLN2P98095 1184 aa9.16□□□□□ -0.94
RNU1-88P-201ENST00000459274 CHMP7Q8WUX9 453 aaPredicted RBP9.16□□□□□ -0.94
RNU1-88P-201ENST00000459274 AQRO60306 1485 aaKnown RBP eCLIP9.15□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms