RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 NISCHQ9Y2I1 1504 aa45.43■■■■■ 4.86
USP39-209ENST00000458268 CCDC180Q9P1Z9 1646 aa40.48■■■■■ 4.07
USP39-209ENST00000458268 ABCC9O60706 1549 aa39.91■■■■□ 3.98
USP39-209ENST00000458268 DCAF8L2P0C7V8 631 aa38.3■■■■□ 3.72
USP39-209ENST00000458268 RB1CC1Q8TDY2 1594 aa38.21■■■■□ 3.71
USP39-209ENST00000458268 NACADO15069 1562 aa38.05■■■■□ 3.68
USP39-209ENST00000458268 ZCCHC6Q5VYS8 1495 aaKnown RBP37.81■■■■□ 3.64
USP39-209ENST00000458268 MYO15BQ96JP2 1530 aa37.61■■■■□ 3.61
USP39-209ENST00000458268 DCAF1Q9Y4B6 1507 aa37.46■■■■□ 3.59
USP39-209ENST00000458268 UNC13AQ9UPW8 1703 aa37.43■■■■□ 3.58
USP39-209ENST00000458268 PABPN1Q86U42 306 aaKnown RBP eCLIP37.27■■■■□ 3.56
USP39-209ENST00000458268 SCRIBQ14160 1630 aa37.1■■■■□ 3.53
USP39-209ENST00000458268 BICRAQ9NZM4 1560 aa37.02■■■■□ 3.52
USP39-209ENST00000458268 DNAJC5BQ9UF47 199 aa36.65■■■■□ 3.46
USP39-209ENST00000458268 SHROOM4Q9ULL8 1493 aa36.47■■■■□ 3.43
USP39-209ENST00000458268 EIF4G1Q04637 1599 aaKnown RBP36.1■■■■□ 3.37
USP39-209ENST00000458268 CC2D2AQ9P2K1 1620 aa36.02■■■■□ 3.36
USP39-209ENST00000458268 CECR2Q9BXF3 1484 aa35.8■■■■□ 3.32
USP39-209ENST00000458268 SMARCA4P51532 1647 aa35.35■■■■□ 3.25
USP39-209ENST00000458268 BAZ1AQ9NRL2 1556 aaPredicted RBP35.25■■■■□ 3.23
USP39-209ENST00000458268 ATAD2BQ9ULI0 1458 aa35.13■■■■□ 3.21
USP39-209ENST00000458268 SMARCA2P51531 1590 aa35.1■■■■□ 3.21
USP39-209ENST00000458268 MROH2BQ7Z745 1585 aa35.08■■■■□ 3.21
USP39-209ENST00000458268 NCAPD3P42695 1498 aa35.06■■■■□ 3.2
USP39-209ENST00000458268 HMGXB3Q12766 1538 aa34.93■■■■□ 3.18
USP39-209ENST00000458268 BAZ1BQ9UIG0 1483 aaKnown RBP34.92■■■■□ 3.18
USP39-209ENST00000458268 PEG3Q9GZU2 1588 aa34.86■■■■□ 3.17
USP39-209ENST00000458268 WIZO95785 1651 aa34.76■■■■□ 3.16
USP39-209ENST00000458268 RSF1Q96T23 1441 aaPredicted RBP34.55■■■■□ 3.12
USP39-209ENST00000458268 NESP48681 1621 aa34.46■■■■□ 3.11
USP39-209ENST00000458268 ERCC6Q03468 1493 aa34.42■■■■□ 3.1
USP39-209ENST00000458268 TOP2AP11388 1531 aaKnown RBP34.3■■■■□ 3.08
USP39-209ENST00000458268 LAMC3Q9Y6N6 1575 aa34.25■■■■□ 3.07
USP39-209ENST00000458268 KIF21AQ7Z4S6 1674 aa34.09■■■■□ 3.05
USP39-209ENST00000458268 CADPSQ9ULU8 1353 aa34.09■■■■□ 3.05
USP39-209ENST00000458268 PDS5BQ9NTI5 1447 aa34.02■■■■□ 3.04
USP39-209ENST00000458268 CUX2O14529 1486 aa33.94■■■■□ 3.02
USP39-209ENST00000458268 THOC2Q8NI27 1593 aaKnown RBP33.91■■■■□ 3.02
USP39-209ENST00000458268 CCDC88BA6NC98 1476 aa33.89■■■■□ 3.02
USP39-209ENST00000458268 CFTRP13569 1480 aa33.83■■■■□ 3.01
USP39-209ENST00000458268 SUPT5HO00267 1087 aaKnown RBP33.81■■■■□ 3
USP39-209ENST00000458268 FANCD2Q9BXW9 1451 aa33.77■■■■□ 3
USP39-209ENST00000458268 CEP164Q9UPV0 1460 aa33.76■■■■□ 3
USP39-209ENST00000458268 MRC2Q9UBG0 1479 aa33.72■■■□□ 2.99
USP39-209ENST00000458268 PRDM2Q13029 1718 aa33.71■■■□□ 2.99
USP39-209ENST00000458268 WDR62O43379 1518 aa33.58■■■□□ 2.97
USP39-209ENST00000458268 URB2Q14146 1524 aaKnown RBP33.44■■■□□ 2.94
USP39-209ENST00000458268 TOPBP1Q92547 1522 aa33.21■■■□□ 2.91
USP39-209ENST00000458268 DNMBPQ6XZF7 1577 aa33.17■■■□□ 2.9
USP39-209ENST00000458268 ABCC8Q09428 1581 aa33.11■■■□□ 2.89
USP39-209ENST00000458268 DNAJC5Q9H3Z4 198 aa33.07■■■□□ 2.88
USP39-209ENST00000458268 IFT140Q96RY7 1462 aa33■■■□□ 2.87
USP39-209ENST00000458268 ZNF608Q9ULD9 1512 aaPredicted RBP32.93■■■□□ 2.86
USP39-209ENST00000458268 POLA1P09884 1462 aaPredicted RBP32.92■■■□□ 2.86
USP39-209ENST00000458268 CUX1P39880 1505 aa32.91■■■□□ 2.86
USP39-209ENST00000458268 FGD5Q6ZNL6 1462 aa32.86■■■□□ 2.85
USP39-209ENST00000458268 TARBP1Q13395 1621 aaKnown RBP32.84■■■□□ 2.85
USP39-209ENST00000458268 RAD54L2Q9Y4B4 1467 aa32.84■■■□□ 2.85
USP39-209ENST00000458268 EIF4G3O43432 1585 aaKnown RBP32.83■■■□□ 2.85
USP39-209ENST00000458268 SOGA1O94964 1423 aa32.78■■■□□ 2.84
USP39-209ENST00000458268 AQRO60306 1485 aaKnown RBP eCLIP32.74■■■□□ 2.832e-6■■■■□ 22.7
USP39-209ENST00000458268 TDRD9Q8NDG6 1382 aaKnown RBP32.67■■■□□ 2.82
USP39-209ENST00000458268 WRNQ14191 1432 aaPredicted RBP eCLIP32.65■■■□□ 2.82
USP39-209ENST00000458268 SYNJ1O43426 1573 aa32.62■■■□□ 2.81
USP39-209ENST00000458268 BIVM-ERCC5R4GMW8 1640 aa32.59■■■□□ 2.81
USP39-209ENST00000458268 WDR97A6NE52 1622 aa32.58■■■□□ 2.81
USP39-209ENST00000458268 TOP2BQ02880 1626 aa32.58■■■□□ 2.81
USP39-209ENST00000458268 OSCARQ8IYS5 282 aa32.55■■■□□ 2.8
USP39-209ENST00000458268 CHD1O14646 1710 aa32.51■■■□□ 2.8
USP39-209ENST00000458268 FBLN2P98095 1184 aa32.51■■■□□ 2.79
USP39-209ENST00000458268 SNAPC4Q5SXM2 1469 aa32.45■■■□□ 2.79
USP39-209ENST00000458268 PBRM1Q86U86 1689 aa32.45■■■□□ 2.79
USP39-209ENST00000458268 ABCA10Q8WWZ4 1543 aa32.43■■■□□ 2.78
USP39-209ENST00000458268 GRIN2BQ13224 1484 aa32.41■■■□□ 2.78
USP39-209ENST00000458268 GAPVD1Q14C86 1478 aa32.41■■■□□ 2.78
USP39-209ENST00000458268 ABCA5Q8WWZ7 1642 aa32.37■■■□□ 2.77
USP39-209ENST00000458268 MAGI1Q96QZ7 1491 aaPredicted RBP32.3■■■□□ 2.76
USP39-209ENST00000458268 CHMP7Q8WUX9 453 aaPredicted RBP32.28■■■□□ 2.76
USP39-209ENST00000458268 SYNJ2O15056 1496 aa32.21■■■□□ 2.75
USP39-209ENST00000458268 TRIM41Q8WV44 630 aa32.19■■■□□ 2.74
USP39-209ENST00000458268 RIMBP3CA6NJZ7 1639 aa32.13■■■□□ 2.73
USP39-209ENST00000458268 RIMBP3BA6NNM3 1639 aa32.13■■■□□ 2.73
USP39-209ENST00000458268 RIMBP3Q9UFD9 1639 aa32.13■■■□□ 2.73
USP39-209ENST00000458268 ADAMTS12P58397 1594 aa32.11■■■□□ 2.73
USP39-209ENST00000458268 ARHGEF11O15085 1522 aa32.06■■■□□ 2.72
USP39-209ENST00000458268 ERICH3Q5RHP9 1530 aa32.05■■■□□ 2.72
USP39-209ENST00000458268 CLASP1Q7Z460 1538 aa32■■■□□ 2.71
USP39-209ENST00000458268 GRIN2AQ12879 1464 aa31.99■■■□□ 2.71
USP39-209ENST00000458268 FHAD1B1AJZ9 1412 aa31.99■■■□□ 2.71
USP39-209ENST00000458268 KIF27Q86VH2 1401 aa31.96■■■□□ 2.71
USP39-209ENST00000458268 CEP170Q5SW79 1584 aa31.88■■■□□ 2.69
USP39-209ENST00000458268 CYB5RLQ6IPT4 315 aa31.84■■■□□ 2.69
USP39-209ENST00000458268 CUL7Q14999 1698 aa31.8■■■□□ 2.68
USP39-209ENST00000458268 ARAP1Q96P48 1450 aa31.79■■■□□ 2.68
USP39-209ENST00000458268 NUP160Q12769 1436 aa31.79■■■□□ 2.68
USP39-209ENST00000458268 IGF1RP08069 1367 aa31.79■■■□□ 2.68
USP39-209ENST00000458268 RUSC2Q8N2Y8 1516 aa31.7■■■□□ 2.66
USP39-209ENST00000458268 CARMIL1Q5VZK9 1371 aa31.66■■■□□ 2.66
USP39-209ENST00000458268 ERCC6L2Q5T890 1561 aa31.65■■■□□ 2.66
USP39-209ENST00000458268 SHROOM2Q13796 1616 aa31.6■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms