RNA–Protein interactions for RNA: ENST00000458188.2

CLTCL1-204, Transcript of clathrin heavy chain like 1, humanhuman

TSL 3

Gene CLTCL1, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-204ENST00000458188 NISCHQ9Y2I1 1504 aa20.41■□□□□ 0.86
CLTCL1-204ENST00000458188 ABCC9O60706 1549 aa17.88■□□□□ 0.45
CLTCL1-204ENST00000458188 CCDC180Q9P1Z9 1646 aa17.85■□□□□ 0.45
CLTCL1-204ENST00000458188 DCAF8L2P0C7V8 631 aa17.24■□□□□ 0.35
CLTCL1-204ENST00000458188 DNAJC5BQ9UF47 199 aa17.23■□□□□ 0.35
CLTCL1-204ENST00000458188 ZCCHC6Q5VYS8 1495 aaKnown RBP17.02■□□□□ 0.32
CLTCL1-204ENST00000458188 NACADO15069 1562 aa16.81■□□□□ 0.28
CLTCL1-204ENST00000458188 RB1CC1Q8TDY2 1594 aa16.79■□□□□ 0.28
CLTCL1-204ENST00000458188 DCAF1Q9Y4B6 1507 aa16.78■□□□□ 0.28
CLTCL1-204ENST00000458188 MYO15BQ96JP2 1530 aa16.73■□□□□ 0.27
CLTCL1-204ENST00000458188 PABPN1Q86U42 306 aaKnown RBP eCLIP16.59■□□□□ 0.25
CLTCL1-204ENST00000458188 SHROOM4Q9ULL8 1493 aa16.53■□□□□ 0.24
CLTCL1-204ENST00000458188 SCRIBQ14160 1630 aa16.51■□□□□ 0.23
CLTCL1-204ENST00000458188 UNC13AQ9UPW8 1703 aa16.36■□□□□ 0.21
CLTCL1-204ENST00000458188 BICRAQ9NZM4 1560 aa16.3■□□□□ 0.2
CLTCL1-204ENST00000458188 DNAJC5Q9H3Z4 198 aa16.3■□□□□ 0.2
CLTCL1-204ENST00000458188 CECR2Q9BXF3 1484 aa16.16■□□□□ 0.18
CLTCL1-204ENST00000458188 CC2D2AQ9P2K1 1620 aa16.1■□□□□ 0.17
CLTCL1-204ENST00000458188 EIF4G1Q04637 1599 aaKnown RBP15.92■□□□□ 0.14
CLTCL1-204ENST00000458188 MROH2BQ7Z745 1585 aa15.79■□□□□ 0.12
CLTCL1-204ENST00000458188 BAZ1AQ9NRL2 1556 aaPredicted RBP15.75■□□□□ 0.11
CLTCL1-204ENST00000458188 SMARCA4P51532 1647 aa15.73■□□□□ 0.11
CLTCL1-204ENST00000458188 RSF1Q96T23 1441 aaPredicted RBP15.72■□□□□ 0.11
CLTCL1-204ENST00000458188 SUPT5HO00267 1087 aaKnown RBP15.7■□□□□ 0.1
CLTCL1-204ENST00000458188 ATAD2BQ9ULI0 1458 aa15.65■□□□□ 0.1
CLTCL1-204ENST00000458188 CUX2O14529 1486 aa15.64■□□□□ 0.09
CLTCL1-204ENST00000458188 WIZO95785 1651 aa15.6■□□□□ 0.09
CLTCL1-204ENST00000458188 NCAPD3P42695 1498 aa15.58■□□□□ 0.08
CLTCL1-204ENST00000458188 SMARCA2P51531 1590 aa15.56■□□□□ 0.08
CLTCL1-204ENST00000458188 BAZ1BQ9UIG0 1483 aaKnown RBP15.53■□□□□ 0.08
CLTCL1-204ENST00000458188 ERCC6Q03468 1493 aa15.52■□□□□ 0.08
CLTCL1-204ENST00000458188 PEG3Q9GZU2 1588 aa15.52■□□□□ 0.07
CLTCL1-204ENST00000458188 HMGXB3Q12766 1538 aa15.44■□□□□ 0.06
CLTCL1-204ENST00000458188 TOP2AP11388 1531 aaKnown RBP15.4■□□□□ 0.06
CLTCL1-204ENST00000458188 TRIM41Q8WV44 630 aa15.39■□□□□ 0.05
CLTCL1-204ENST00000458188 CCDC88BA6NC98 1476 aa15.32■□□□□ 0.04
CLTCL1-204ENST00000458188 NESP48681 1621 aa15.22■□□□□ 0.03
CLTCL1-204ENST00000458188 CADPSQ9ULU8 1353 aa15.19■□□□□ 0.02
CLTCL1-204ENST00000458188 CFTRP13569 1480 aa15.11■□□□□ 0.01
CLTCL1-204ENST00000458188 THOC2Q8NI27 1593 aaKnown RBP15.09■□□□□ 0.01
CLTCL1-204ENST00000458188 LAMC3Q9Y6N6 1575 aa15.05■□□□□ -0
CLTCL1-204ENST00000458188 PDS5BQ9NTI5 1447 aa15.03■□□□□ -0
CLTCL1-204ENST00000458188 FANCD2Q9BXW9 1451 aa15.01□□□□□ -0.01
CLTCL1-204ENST00000458188 KIF21AQ7Z4S6 1674 aa14.97□□□□□ -0.01
CLTCL1-204ENST00000458188 OSCARQ8IYS5 282 aa14.93□□□□□ -0.02
CLTCL1-204ENST00000458188 CEP164Q9UPV0 1460 aa14.93□□□□□ -0.02
CLTCL1-204ENST00000458188 MRC2Q9UBG0 1479 aa14.85□□□□□ -0.03
CLTCL1-204ENST00000458188 ABCC8Q09428 1581 aa14.85□□□□□ -0.03
CLTCL1-204ENST00000458188 URB2Q14146 1524 aaKnown RBP14.84□□□□□ -0.03
CLTCL1-204ENST00000458188 WRNQ14191 1432 aaPredicted RBP eCLIP14.8□□□□□ -0.04
CLTCL1-204ENST00000458188 PRDM2Q13029 1718 aa14.8□□□□□ -0.04
CLTCL1-204ENST00000458188 WDR62O43379 1518 aa14.78□□□□□ -0.04
CLTCL1-204ENST00000458188 CUX1P39880 1505 aa14.77□□□□□ -0.04
CLTCL1-204ENST00000458188 TOPBP1Q92547 1522 aa14.77□□□□□ -0.04
CLTCL1-204ENST00000458188 CHIC1Q5VXU3 224 aa14.75□□□□□ -0.05
CLTCL1-204ENST00000458188 DNMBPQ6XZF7 1577 aa14.73□□□□□ -0.05
CLTCL1-204ENST00000458188 SYNJ1O43426 1573 aa14.71□□□□□ -0.05
CLTCL1-204ENST00000458188 RAD54L2Q9Y4B4 1467 aa14.69□□□□□ -0.06
CLTCL1-204ENST00000458188 AEBP2Q6ZN18 517 aaPredicted RBP14.69□□□□□ -0.06
CLTCL1-204ENST00000458188 FGD5Q6ZNL6 1462 aa14.69□□□□□ -0.06
CLTCL1-204ENST00000458188 RIMBP3CA6NJZ7 1639 aa14.68□□□□□ -0.06
CLTCL1-204ENST00000458188 RIMBP3BA6NNM3 1639 aa14.68□□□□□ -0.06
CLTCL1-204ENST00000458188 RIMBP3Q9UFD9 1639 aa14.68□□□□□ -0.06
CLTCL1-204ENST00000458188 SOGA1O94964 1423 aa14.67□□□□□ -0.06
CLTCL1-204ENST00000458188 TRHP20396 242 aaPredicted RBP14.67□□□□□ -0.06
CLTCL1-204ENST00000458188 POLA1P09884 1462 aaPredicted RBP14.67□□□□□ -0.06
CLTCL1-204ENST00000458188 TOP2BQ02880 1626 aa14.64□□□□□ -0.07
CLTCL1-204ENST00000458188 TDRD9Q8NDG6 1382 aaKnown RBP14.62□□□□□ -0.07
CLTCL1-204ENST00000458188 CYB5RLQ6IPT4 315 aa14.61□□□□□ -0.07
CLTCL1-204ENST00000458188 IFT140Q96RY7 1462 aa14.6□□□□□ -0.07
CLTCL1-204ENST00000458188 ZNF608Q9ULD9 1512 aaPredicted RBP14.6□□□□□ -0.07
CLTCL1-204ENST00000458188 BIVM-ERCC5R4GMW8 1640 aa14.59□□□□□ -0.07
CLTCL1-204ENST00000458188 ARHGEF11O15085 1522 aa14.58□□□□□ -0.08
CLTCL1-204ENST00000458188 AQRO60306 1485 aaKnown RBP eCLIP14.57□□□□□ -0.08
CLTCL1-204ENST00000458188 FAM9AQ8IZU1 332 aaPredicted RBP14.55□□□□□ -0.08
CLTCL1-204ENST00000458188 TARBP1Q13395 1621 aaKnown RBP14.54□□□□□ -0.08
CLTCL1-204ENST00000458188 RUSC2Q8N2Y8 1516 aa14.51□□□□□ -0.09
CLTCL1-204ENST00000458188 ABCA10Q8WWZ4 1543 aa14.51□□□□□ -0.09
CLTCL1-204ENST00000458188 GAPVD1Q14C86 1478 aa14.46□□□□□ -0.09
CLTCL1-204ENST00000458188 KIF27Q86VH2 1401 aa14.46□□□□□ -0.09
CLTCL1-204ENST00000458188 FBLN2P98095 1184 aa14.45□□□□□ -0.1
CLTCL1-204ENST00000458188 EHMT2Q96KQ7 1210 aa14.43□□□□□ -0.1
CLTCL1-204ENST00000458188 EIF4G3O43432 1585 aaKnown RBP14.43□□□□□ -0.1
CLTCL1-204ENST00000458188 IGF1RP08069 1367 aa14.42□□□□□ -0.1
CLTCL1-204ENST00000458188 WDR97A6NE52 1622 aa14.41□□□□□ -0.1
CLTCL1-204ENST00000458188 GRIN2BQ13224 1484 aa14.4□□□□□ -0.1
CLTCL1-204ENST00000458188 CSRNP3Q8WYN3 585 aa14.39□□□□□ -0.11
CLTCL1-204ENST00000458188 SNAPC4Q5SXM2 1469 aa14.38□□□□□ -0.11
CLTCL1-204ENST00000458188 ABCA5Q8WWZ7 1642 aa14.38□□□□□ -0.11
CLTCL1-204ENST00000458188 ARAP1Q96P48 1450 aa14.38□□□□□ -0.11
CLTCL1-204ENST00000458188 CHMP7Q8WUX9 453 aaPredicted RBP14.37□□□□□ -0.11
CLTCL1-204ENST00000458188 CARMIL1Q5VZK9 1371 aa14.34□□□□□ -0.11
CLTCL1-204ENST00000458188 CHD1O14646 1710 aa14.31□□□□□ -0.12
CLTCL1-204ENST00000458188 ERICH3Q5RHP9 1530 aa14.31□□□□□ -0.12
CLTCL1-204ENST00000458188 FHAD1B1AJZ9 1412 aa14.3□□□□□ -0.12
CLTCL1-204ENST00000458188 PBRM1Q86U86 1689 aa14.3□□□□□ -0.12
CLTCL1-204ENST00000458188 MAGI1Q96QZ7 1491 aaPredicted RBP14.29□□□□□ -0.12
CLTCL1-204ENST00000458188 EEA1Q15075 1411 aa14.28□□□□□ -0.12
CLTCL1-204ENST00000458188 SYNJ2O15056 1496 aa14.27□□□□□ -0.12
CLTCL1-204ENST00000458188 LOC105371045A0A1W2PR82 267 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms