RNA–Protein interactions for RNA: ENST00000457942.1

CHCHD3-204, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 4

Gene CHCHD3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-204ENST00000457942 NISCHQ9Y2I1 1504 aa39.22■■■■□ 3.87
CHCHD3-204ENST00000457942 ABCC9O60706 1549 aa36.01■■■■□ 3.36
CHCHD3-204ENST00000457942 CCDC180Q9P1Z9 1646 aa35.42■■■■□ 3.26
CHCHD3-204ENST00000457942 DNAJC5BQ9UF47 199 aa34.1■■■■□ 3.05
CHCHD3-204ENST00000457942 RB1CC1Q8TDY2 1594 aa33.95■■■■□ 3.03
CHCHD3-204ENST00000457942 NACADO15069 1562 aa33.54■■■□□ 2.96
CHCHD3-204ENST00000457942 DCAF8L2P0C7V8 631 aa33.42■■■□□ 2.94
CHCHD3-204ENST00000457942 PABPN1Q86U42 306 aaKnown RBP eCLIP33.42■■■□□ 2.94
CHCHD3-204ENST00000457942 UNC13AQ9UPW8 1703 aa33.27■■■□□ 2.92
CHCHD3-204ENST00000457942 BICRAQ9NZM4 1560 aa33.01■■■□□ 2.88
CHCHD3-204ENST00000457942 MYO15BQ96JP2 1530 aa32.81■■■□□ 2.84
CHCHD3-204ENST00000457942 CC2D2AQ9P2K1 1620 aa32.45■■■□□ 2.79
CHCHD3-204ENST00000457942 ZCCHC6Q5VYS8 1495 aaKnown RBP32.43■■■□□ 2.78
CHCHD3-204ENST00000457942 CECR2Q9BXF3 1484 aa32.42■■■□□ 2.78
CHCHD3-204ENST00000457942 SCRIBQ14160 1630 aa32.41■■■□□ 2.78
CHCHD3-204ENST00000457942 SHROOM4Q9ULL8 1493 aa32.36■■■□□ 2.77
CHCHD3-204ENST00000457942 DCAF1Q9Y4B6 1507 aa32.26■■■□□ 2.76
CHCHD3-204ENST00000457942 EIF4G1Q04637 1599 aaKnown RBP32.25■■■□□ 2.75
CHCHD3-204ENST00000457942 DNAJC5Q9H3Z4 198 aa31.56■■■□□ 2.64
CHCHD3-204ENST00000457942 ERCC6Q03468 1493 aa31.11■■■□□ 2.57
CHCHD3-204ENST00000457942 CUX2O14529 1486 aa31.09■■■□□ 2.57
CHCHD3-204ENST00000457942 NCAPD3P42695 1498 aa30.93■■■□□ 2.54
CHCHD3-204ENST00000457942 ATAD2BQ9ULI0 1458 aa30.85■■■□□ 2.53
CHCHD3-204ENST00000457942 NESP48681 1621 aa30.8■■■□□ 2.52
CHCHD3-204ENST00000457942 SMARCA4P51532 1647 aa30.76■■■□□ 2.52
CHCHD3-204ENST00000457942 HMGXB3Q12766 1538 aa30.73■■■□□ 2.51
CHCHD3-204ENST00000457942 SMARCA2P51531 1590 aa30.73■■■□□ 2.51
CHCHD3-204ENST00000457942 BAZ1BQ9UIG0 1483 aaKnown RBP30.58■■■□□ 2.49
CHCHD3-204ENST00000457942 THOC2Q8NI27 1593 aaKnown RBP30.56■■■□□ 2.48
CHCHD3-204ENST00000457942 BAZ1AQ9NRL2 1556 aaPredicted RBP30.49■■■□□ 2.47
CHCHD3-204ENST00000457942 KIF21AQ7Z4S6 1674 aa30.4■■■□□ 2.46
CHCHD3-204ENST00000457942 LAMC3Q9Y6N6 1575 aa30.39■■■□□ 2.46
CHCHD3-204ENST00000457942 PEG3Q9GZU2 1588 aa30.35■■■□□ 2.45
CHCHD3-204ENST00000457942 MROH2BQ7Z745 1585 aa30.29■■■□□ 2.44
CHCHD3-204ENST00000457942 TRIM41Q8WV44 630 aa30.2■■■□□ 2.43
CHCHD3-204ENST00000457942 PDS5BQ9NTI5 1447 aa30.2■■■□□ 2.42
CHCHD3-204ENST00000457942 MRC2Q9UBG0 1479 aa30.04■■■□□ 2.4
CHCHD3-204ENST00000457942 CADPSQ9ULU8 1353 aa30.01■■■□□ 2.39
CHCHD3-204ENST00000457942 WDR62O43379 1518 aa29.97■■■□□ 2.39
CHCHD3-204ENST00000457942 WIZO95785 1651 aa29.95■■■□□ 2.38
CHCHD3-204ENST00000457942 CEP164Q9UPV0 1460 aa29.85■■■□□ 2.37
CHCHD3-204ENST00000457942 FANCD2Q9BXW9 1451 aa29.75■■■□□ 2.35
CHCHD3-204ENST00000457942 CFTRP13569 1480 aa29.57■■■□□ 2.32
CHCHD3-204ENST00000457942 URB2Q14146 1524 aaKnown RBP29.56■■■□□ 2.32
CHCHD3-204ENST00000457942 OSCARQ8IYS5 282 aa29.54■■■□□ 2.32
CHCHD3-204ENST00000457942 RSF1Q96T23 1441 aaPredicted RBP29.48■■■□□ 2.31
CHCHD3-204ENST00000457942 TOP2AP11388 1531 aaKnown RBP29.47■■■□□ 2.31
CHCHD3-204ENST00000457942 RIMBP3CA6NJZ7 1639 aa29.38■■■□□ 2.29
CHCHD3-204ENST00000457942 RIMBP3BA6NNM3 1639 aa29.38■■■□□ 2.29
CHCHD3-204ENST00000457942 RIMBP3Q9UFD9 1639 aa29.38■■■□□ 2.29
CHCHD3-204ENST00000457942 PRDM2Q13029 1718 aa29.33■■■□□ 2.29
CHCHD3-204ENST00000457942 ZNF608Q9ULD9 1512 aaPredicted RBP29.3■■■□□ 2.28
CHCHD3-204ENST00000457942 ARHGEF11O15085 1522 aa29.21■■■□□ 2.27
CHCHD3-204ENST00000457942 IFT140Q96RY7 1462 aa29.2■■■□□ 2.26
CHCHD3-204ENST00000457942 EIF4G3O43432 1585 aaKnown RBP29.15■■■□□ 2.26
CHCHD3-204ENST00000457942 TOPBP1Q92547 1522 aa29.14■■■□□ 2.25
CHCHD3-204ENST00000457942 CCDC88BA6NC98 1476 aa29.12■■■□□ 2.25
CHCHD3-204ENST00000457942 CHD1O14646 1710 aa29.03■■■□□ 2.24
CHCHD3-204ENST00000457942 DNMBPQ6XZF7 1577 aa28.99■■■□□ 2.23
CHCHD3-204ENST00000457942 CYB5RLQ6IPT4 315 aa28.98■■■□□ 2.23
CHCHD3-204ENST00000457942 AQRO60306 1485 aaKnown RBP eCLIP28.95■■■□□ 2.22
CHCHD3-204ENST00000457942 TARBP1Q13395 1621 aaKnown RBP28.91■■■□□ 2.22
CHCHD3-204ENST00000457942 ARAP1Q96P48 1450 aa28.91■■■□□ 2.22
CHCHD3-204ENST00000457942 ABCC8Q09428 1581 aa28.9■■■□□ 2.22
CHCHD3-204ENST00000457942 FBLN2P98095 1184 aa28.89■■■□□ 2.22
CHCHD3-204ENST00000457942 TRHP20396 242 aaPredicted RBP28.87■■■□□ 2.21
CHCHD3-204ENST00000457942 POLA1P09884 1462 aaPredicted RBP28.81■■■□□ 2.2
CHCHD3-204ENST00000457942 RAD54L2Q9Y4B4 1467 aa28.76■■■□□ 2.19
CHCHD3-204ENST00000457942 TDRD9Q8NDG6 1382 aaKnown RBP28.69■■■□□ 2.18
CHCHD3-204ENST00000457942 SNAPC4Q5SXM2 1469 aa28.68■■■□□ 2.18
CHCHD3-204ENST00000457942 SOGA1O94964 1423 aa28.62■■■□□ 2.17
CHCHD3-204ENST00000457942 CLASP1Q7Z460 1538 aa28.61■■■□□ 2.17
CHCHD3-204ENST00000457942 FGD5Q6ZNL6 1462 aa28.59■■■□□ 2.17
CHCHD3-204ENST00000457942 SYNJ1O43426 1573 aa28.54■■■□□ 2.16
CHCHD3-204ENST00000457942 CHMP7Q8WUX9 453 aaPredicted RBP28.5■■■□□ 2.15
CHCHD3-204ENST00000457942 CUX1P39880 1505 aa28.49■■■□□ 2.15
CHCHD3-204ENST00000457942 WDR97A6NE52 1622 aa28.48■■■□□ 2.15
CHCHD3-204ENST00000457942 MAGI1Q96QZ7 1491 aaPredicted RBP28.47■■■□□ 2.15
CHCHD3-204ENST00000457942 GRIN2BQ13224 1484 aa28.44■■■□□ 2.14
CHCHD3-204ENST00000457942 SUPT5HO00267 1087 aaKnown RBP28.43■■■□□ 2.14
CHCHD3-204ENST00000457942 PBRM1Q86U86 1689 aa28.42■■■□□ 2.14
CHCHD3-204ENST00000457942 SYNJ2O15056 1496 aa28.4■■■□□ 2.14
CHCHD3-204ENST00000457942 AEBP2Q6ZN18 517 aaPredicted RBP28.36■■■□□ 2.13
CHCHD3-204ENST00000457942 GAPVD1Q14C86 1478 aa28.33■■■□□ 2.13
CHCHD3-204ENST00000457942 ABCA5Q8WWZ7 1642 aa28.24■■■□□ 2.11
CHCHD3-204ENST00000457942 ERCC6L2Q5T890 1561 aa28.22■■■□□ 2.11
CHCHD3-204ENST00000457942 ABCA10Q8WWZ4 1543 aa28.16■■■□□ 2.1
CHCHD3-204ENST00000457942 GRIN2AQ12879 1464 aa28.11■■■□□ 2.09
CHCHD3-204ENST00000457942 ADAMTS12P58397 1594 aa28.09■■■□□ 2.09
CHCHD3-204ENST00000457942 CEP170Q5SW79 1584 aa28.09■■■□□ 2.09
CHCHD3-204ENST00000457942 NUP160Q12769 1436 aa27.98■■■□□ 2.07
CHCHD3-204ENST00000457942 SHROOM2Q13796 1616 aa27.95■■■□□ 2.06
CHCHD3-204ENST00000457942 WRNQ14191 1432 aaPredicted RBP eCLIP27.94■■■□□ 2.06
CHCHD3-204ENST00000457942 KIF13AQ9H1H9 1805 aa27.89■■■□□ 2.06
CHCHD3-204ENST00000457942 BIVM-ERCC5R4GMW8 1640 aa27.89■■■□□ 2.05
CHCHD3-204ENST00000457942 FHAD1B1AJZ9 1412 aa27.88■■■□□ 2.05
CHCHD3-204ENST00000457942 TOP2BQ02880 1626 aa27.86■■■□□ 2.05
CHCHD3-204ENST00000457942 PRG4Q92954 1404 aaPredicted RBP27.8■■■□□ 2.04
CHCHD3-204ENST00000457942 ERICH3Q5RHP9 1530 aa27.79■■■□□ 2.04
CHCHD3-204ENST00000457942 RUSC2Q8N2Y8 1516 aa27.72■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms