RNA–Protein interactions for RNA: ENST00000457312.1

SF3B4-202, Transcript of splicing factor 3b subunit 4, humanhuman

TSL 5

Gene SF3B4, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-202ENST00000457312 NISCHQ9Y2I1 1504 aa42.86■■■■■ 4.45
SF3B4-202ENST00000457312 ABCC9O60706 1549 aa40.62■■■■■ 4.09
SF3B4-202ENST00000457312 DNAJC5BQ9UF47 199 aa39.43■■■■□ 3.9
SF3B4-202ENST00000457312 CCDC180Q9P1Z9 1646 aa39.24■■■■□ 3.87
SF3B4-202ENST00000457312 RB1CC1Q8TDY2 1594 aa38.01■■■■□ 3.67
SF3B4-202ENST00000457312 PABPN1Q86U42 306 aaKnown RBP eCLIP37.47■■■■□ 3.59
SF3B4-202ENST00000457312 NACADO15069 1562 aa37.37■■■■□ 3.57
SF3B4-202ENST00000457312 UNC13AQ9UPW8 1703 aa37.32■■■■□ 3.56
SF3B4-202ENST00000457312 DNAJC5Q9H3Z4 198 aa37.29■■■■□ 3.56
SF3B4-202ENST00000457312 BICRAQ9NZM4 1560 aa37.04■■■■□ 3.52
SF3B4-202ENST00000457312 CECR2Q9BXF3 1484 aa36.75■■■■□ 3.47
SF3B4-202ENST00000457312 CC2D2AQ9P2K1 1620 aa36.68■■■■□ 3.46
SF3B4-202ENST00000457312 DCAF8L2P0C7V8 631 aa36.58■■■■□ 3.45
SF3B4-202ENST00000457312 MYO15BQ96JP2 1530 aa36.36■■■■□ 3.41
SF3B4-202ENST00000457312 SHROOM4Q9ULL8 1493 aa36.35■■■■□ 3.41
SF3B4-202ENST00000457312 EIF4G1Q04637 1599 aaKnown RBP36.22■■■■□ 3.39
SF3B4-202ENST00000457312 CUX2O14529 1486 aa35.67■■■■□ 3.3
SF3B4-202ENST00000457312 SCRIBQ14160 1630 aa35.61■■■■□ 3.29
SF3B4-202ENST00000457312 DCAF1Q9Y4B6 1507 aa35.32■■■■□ 3.25
SF3B4-202ENST00000457312 ZCCHC6Q5VYS8 1495 aaKnown RBP35.24■■■■□ 3.23
SF3B4-202ENST00000457312 ERCC6Q03468 1493 aa35.15■■■■□ 3.22
SF3B4-202ENST00000457312 TRIM41Q8WV44 630 aa34.98■■■■□ 3.19
SF3B4-202ENST00000457312 THOC2Q8NI27 1593 aaKnown RBP34.56■■■■□ 3.12
SF3B4-202ENST00000457312 NESP48681 1621 aa34.49■■■■□ 3.11
SF3B4-202ENST00000457312 NCAPD3P42695 1498 aa34.48■■■■□ 3.11
SF3B4-202ENST00000457312 ATAD2BQ9ULI0 1458 aa34.18■■■■□ 3.06
SF3B4-202ENST00000457312 HMGXB3Q12766 1538 aa34.17■■■■□ 3.06
SF3B4-202ENST00000457312 SMARCA2P51531 1590 aa34.16■■■■□ 3.06
SF3B4-202ENST00000457312 KIF21AQ7Z4S6 1674 aa34.09■■■■□ 3.05
SF3B4-202ENST00000457312 LAMC3Q9Y6N6 1575 aa34■■■■□ 3.03
SF3B4-202ENST00000457312 BAZ1AQ9NRL2 1556 aaPredicted RBP33.91■■■■□ 3.02
SF3B4-202ENST00000457312 SMARCA4P51532 1647 aa33.82■■■■□ 3.01
SF3B4-202ENST00000457312 PDS5BQ9NTI5 1447 aa33.76■■■□□ 2.99
SF3B4-202ENST00000457312 BAZ1BQ9UIG0 1483 aaKnown RBP33.76■■■□□ 2.99
SF3B4-202ENST00000457312 WDR62O43379 1518 aa33.67■■■□□ 2.98
SF3B4-202ENST00000457312 MRC2Q9UBG0 1479 aa33.65■■■□□ 2.98
SF3B4-202ENST00000457312 OSCARQ8IYS5 282 aa33.61■■■□□ 2.97
SF3B4-202ENST00000457312 RIMBP3CA6NJZ7 1639 aa33.57■■■□□ 2.97
SF3B4-202ENST00000457312 RIMBP3BA6NNM3 1639 aa33.57■■■□□ 2.97
SF3B4-202ENST00000457312 RIMBP3Q9UFD9 1639 aa33.57■■■□□ 2.97
SF3B4-202ENST00000457312 PEG3Q9GZU2 1588 aa33.51■■■□□ 2.96
SF3B4-202ENST00000457312 CADPSQ9ULU8 1353 aa33.32■■■□□ 2.92
SF3B4-202ENST00000457312 ARHGEF11O15085 1522 aa33.28■■■□□ 2.92
SF3B4-202ENST00000457312 AEBP2Q6ZN18 517 aaPredicted RBP33.2■■■□□ 2.91
SF3B4-202ENST00000457312 CEP164Q9UPV0 1460 aa33.18■■■□□ 2.9
SF3B4-202ENST00000457312 TRHP20396 242 aaPredicted RBP33.03■■■□□ 2.88
SF3B4-202ENST00000457312 MROH2BQ7Z745 1585 aa33.03■■■□□ 2.88
SF3B4-202ENST00000457312 FANCD2Q9BXW9 1451 aa32.99■■■□□ 2.87
SF3B4-202ENST00000457312 CYB5RLQ6IPT4 315 aa32.93■■■□□ 2.86
SF3B4-202ENST00000457312 URB2Q14146 1524 aaKnown RBP32.88■■■□□ 2.85
SF3B4-202ENST00000457312 ARAP1Q96P48 1450 aa32.86■■■□□ 2.85
SF3B4-202ENST00000457312 ZNF608Q9ULD9 1512 aaPredicted RBP32.72■■■□□ 2.83
SF3B4-202ENST00000457312 CFTRP13569 1480 aa32.67■■■□□ 2.82
SF3B4-202ENST00000457312 CHD1O14646 1710 aa32.6■■■□□ 2.81
SF3B4-202ENST00000457312 WIZO95785 1651 aa32.58■■■□□ 2.81
SF3B4-202ENST00000457312 IFT140Q96RY7 1462 aa32.56■■■□□ 2.8
SF3B4-202ENST00000457312 RSF1Q96T23 1441 aaPredicted RBP32.53■■■□□ 2.8
SF3B4-202ENST00000457312 EIF4G3O43432 1585 aaKnown RBP32.52■■■□□ 2.8
SF3B4-202ENST00000457312 PRDM2Q13029 1718 aa32.39■■■□□ 2.78
SF3B4-202ENST00000457312 TOPBP1Q92547 1522 aa32.23■■■□□ 2.75
SF3B4-202ENST00000457312 AQRO60306 1485 aaKnown RBP eCLIP32.16■■■□□ 2.74
SF3B4-202ENST00000457312 CLASP1Q7Z460 1538 aa32.16■■■□□ 2.74
SF3B4-202ENST00000457312 FBLN2P98095 1184 aa32.12■■■□□ 2.73
SF3B4-202ENST00000457312 ILDR1Q86SU0 546 aaPredicted RBP32.12■■■□□ 2.73
SF3B4-202ENST00000457312 TARBP1Q13395 1621 aaKnown RBP32.11■■■□□ 2.73
SF3B4-202ENST00000457312 TOP2AP11388 1531 aaKnown RBP32.05■■■□□ 2.72
SF3B4-202ENST00000457312 DNMBPQ6XZF7 1577 aa32■■■□□ 2.71
SF3B4-202ENST00000457312 ABCC8Q09428 1581 aa31.97■■■□□ 2.71
SF3B4-202ENST00000457312 SYNJ1O43426 1573 aa31.93■■■□□ 2.7
SF3B4-202ENST00000457312 GAPVD1Q14C86 1478 aa31.84■■■□□ 2.69
SF3B4-202ENST00000457312 SNAPC4Q5SXM2 1469 aa31.84■■■□□ 2.69
SF3B4-202ENST00000457312 POLA1P09884 1462 aaPredicted RBP31.8■■■□□ 2.68
SF3B4-202ENST00000457312 KIF13AQ9H1H9 1805 aa31.7■■■□□ 2.66
SF3B4-202ENST00000457312 RAD54L2Q9Y4B4 1467 aa31.68■■■□□ 2.66
SF3B4-202ENST00000457312 TDRD9Q8NDG6 1382 aaKnown RBP31.68■■■□□ 2.66
SF3B4-202ENST00000457312 MAGI1Q96QZ7 1491 aaPredicted RBP31.67■■■□□ 2.66
SF3B4-202ENST00000457312 WDR97A6NE52 1622 aa31.67■■■□□ 2.66
SF3B4-202ENST00000457312 CHMP7Q8WUX9 453 aaPredicted RBP31.64■■■□□ 2.66
SF3B4-202ENST00000457312 CCDC88BA6NC98 1476 aa31.63■■■□□ 2.65
SF3B4-202ENST00000457312 SYNJ2O15056 1496 aa31.59■■■□□ 2.65
SF3B4-202ENST00000457312 ERCC6L2Q5T890 1561 aa31.53■■■□□ 2.64
SF3B4-202ENST00000457312 SOGA1O94964 1423 aa31.52■■■□□ 2.64
SF3B4-202ENST00000457312 KDM4FA0A1W2PPD8 638 aa31.51■■■□□ 2.63
SF3B4-202ENST00000457312 GRIN2BQ13224 1484 aa31.49■■■□□ 2.63
SF3B4-202ENST00000457312 PBRM1Q86U86 1689 aa31.4■■■□□ 2.62
SF3B4-202ENST00000457312 FGD5Q6ZNL6 1462 aa31.38■■■□□ 2.61
SF3B4-202ENST00000457312 CEP170Q5SW79 1584 aa31.3■■■□□ 2.6
SF3B4-202ENST00000457312 KDM6BO15054 1643 aa31.24■■■□□ 2.59
SF3B4-202ENST00000457312 SHROOM2Q13796 1616 aa31.2■■■□□ 2.58
SF3B4-202ENST00000457312 ABCC10Q5T3U5 1492 aa31.18■■■□□ 2.58
SF3B4-202ENST00000457312 DIP2BQ9P265 1576 aa31.14■■■□□ 2.58
SF3B4-202ENST00000457312 CUX1P39880 1505 aa31.14■■■□□ 2.57
SF3B4-202ENST00000457312 GRIN2AQ12879 1464 aa31.12■■■□□ 2.57
SF3B4-202ENST00000457312 ABCA5Q8WWZ7 1642 aa31.11■■■□□ 2.57
SF3B4-202ENST00000457312 HECW2Q9P2P5 1572 aa31.1■■■□□ 2.57
SF3B4-202ENST00000457312 FAM69CQ0P6D2 419 aa31.09■■■□□ 2.57
SF3B4-202ENST00000457312 NUP160Q12769 1436 aa31.08■■■□□ 2.57
SF3B4-202ENST00000457312 MAPKBP1O60336 1514 aa31.04■■■□□ 2.56
SF3B4-202ENST00000457312 TSPOAP1O95153 1857 aa31■■■□□ 2.55
SF3B4-202ENST00000457312 ADAMTS12P58397 1594 aa30.99■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms