RNA–Protein interactions for RNA: ENST00000456957.2

PKNOX1-204, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 3

Gene PKNOX1, Length 569 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-204ENST00000456957 NISCHQ9Y2I1 1504 aa38.46■■■■□ 3.75
PKNOX1-204ENST00000456957 CCDC180Q9P1Z9 1646 aa34.03■■■■□ 3.04
PKNOX1-204ENST00000456957 ABCC9O60706 1549 aa32.67■■■□□ 2.82
PKNOX1-204ENST00000456957 ZCCHC6Q5VYS8 1495 aaKnown RBP32.17■■■□□ 2.74
PKNOX1-204ENST00000456957 DCAF1Q9Y4B6 1507 aa31.85■■■□□ 2.69
PKNOX1-204ENST00000456957 DCAF8L2P0C7V8 631 aa31.79■■■□□ 2.68
PKNOX1-204ENST00000456957 NACADO15069 1562 aa31.78■■■□□ 2.68
PKNOX1-204ENST00000456957 MYO15BQ96JP2 1530 aa31.75■■■□□ 2.67
PKNOX1-204ENST00000456957 RB1CC1Q8TDY2 1594 aa31.69■■■□□ 2.66
PKNOX1-204ENST00000456957 UNC13AQ9UPW8 1703 aa31.14■■■□□ 2.58
PKNOX1-204ENST00000456957 SCRIBQ14160 1630 aa31.09■■■□□ 2.57
PKNOX1-204ENST00000456957 BICRAQ9NZM4 1560 aa30.76■■■□□ 2.52
PKNOX1-204ENST00000456957 SHROOM4Q9ULL8 1493 aa30.7■■■□□ 2.51
PKNOX1-204ENST00000456957 PABPN1Q86U42 306 aaKnown RBP eCLIP30.57■■■□□ 2.48
PKNOX1-204ENST00000456957 DNAJC5BQ9UF47 199 aa30.31■■■□□ 2.44
PKNOX1-204ENST00000456957 CECR2Q9BXF3 1484 aa29.9■■■□□ 2.38
PKNOX1-204ENST00000456957 EIF4G1Q04637 1599 aaKnown RBP29.88■■■□□ 2.37
PKNOX1-204ENST00000456957 SMARCA4P51532 1647 aa29.78■■■□□ 2.36
PKNOX1-204ENST00000456957 BAZ1AQ9NRL2 1556 aaPredicted RBP29.77■■■□□ 2.36
PKNOX1-204ENST00000456957 MROH2BQ7Z745 1585 aa29.67■■■□□ 2.34
PKNOX1-204ENST00000456957 CC2D2AQ9P2K1 1620 aa29.63■■■□□ 2.33
PKNOX1-204ENST00000456957 RSF1Q96T23 1441 aaPredicted RBP29.49■■■□□ 2.31
PKNOX1-204ENST00000456957 PEG3Q9GZU2 1588 aa29.45■■■□□ 2.31
PKNOX1-204ENST00000456957 WIZO95785 1651 aa29.44■■■□□ 2.3
PKNOX1-204ENST00000456957 SMARCA2P51531 1590 aa29.41■■■□□ 2.3
PKNOX1-204ENST00000456957 ATAD2BQ9ULI0 1458 aa29.4■■■□□ 2.3
PKNOX1-204ENST00000456957 NCAPD3P42695 1498 aa29.28■■■□□ 2.28
PKNOX1-204ENST00000456957 HMGXB3Q12766 1538 aa29.25■■■□□ 2.27
PKNOX1-204ENST00000456957 BAZ1BQ9UIG0 1483 aaKnown RBP29.21■■■□□ 2.27
PKNOX1-204ENST00000456957 TOP2AP11388 1531 aaKnown RBP29.11■■■□□ 2.25
PKNOX1-204ENST00000456957 SUPT5HO00267 1087 aaKnown RBP29.11■■■□□ 2.25
PKNOX1-204ENST00000456957 CCDC88BA6NC98 1476 aa28.72■■■□□ 2.19
PKNOX1-204ENST00000456957 LAMC3Q9Y6N6 1575 aa28.47■■■□□ 2.15
PKNOX1-204ENST00000456957 NESP48681 1621 aa28.47■■■□□ 2.15
PKNOX1-204ENST00000456957 CADPSQ9ULU8 1353 aa28.44■■■□□ 2.14
PKNOX1-204ENST00000456957 PRDM2Q13029 1718 aa28.43■■■□□ 2.14
PKNOX1-204ENST00000456957 CFTRP13569 1480 aa28.42■■■□□ 2.14
PKNOX1-204ENST00000456957 KIF21AQ7Z4S6 1674 aa28.24■■■□□ 2.11
PKNOX1-204ENST00000456957 PDS5BQ9NTI5 1447 aa28.18■■■□□ 2.1
PKNOX1-204ENST00000456957 FANCD2Q9BXW9 1451 aa28.15■■■□□ 2.1
PKNOX1-204ENST00000456957 ERCC6Q03468 1493 aa28.09■■■□□ 2.09
PKNOX1-204ENST00000456957 CEP164Q9UPV0 1460 aa28.08■■■□□ 2.09
PKNOX1-204ENST00000456957 DNAJC5Q9H3Z4 198 aa28.05■■■□□ 2.08
PKNOX1-204ENST00000456957 THOC2Q8NI27 1593 aaKnown RBP27.97■■■□□ 2.07
PKNOX1-204ENST00000456957 MRC2Q9UBG0 1479 aa27.92■■■□□ 2.06
PKNOX1-204ENST00000456957 ABCC8Q09428 1581 aa27.91■■■□□ 2.06
PKNOX1-204ENST00000456957 URB2Q14146 1524 aaKnown RBP27.87■■■□□ 2.05
PKNOX1-204ENST00000456957 WDR62O43379 1518 aa27.84■■■□□ 2.05
PKNOX1-204ENST00000456957 DNMBPQ6XZF7 1577 aa27.83■■■□□ 2.05
PKNOX1-204ENST00000456957 CUX1P39880 1505 aa27.81■■■□□ 2.04
PKNOX1-204ENST00000456957 TOPBP1Q92547 1522 aa27.79■■■□□ 2.04
PKNOX1-204ENST00000456957 WRNQ14191 1432 aaPredicted RBP eCLIP27.78■■■□□ 2.04
PKNOX1-204ENST00000456957 SYNJ1O43426 1573 aa27.77■■■□□ 2.04
PKNOX1-204ENST00000456957 BIVM-ERCC5R4GMW8 1640 aa27.76■■■□□ 2.03
PKNOX1-204ENST00000456957 CUX2O14529 1486 aa27.75■■■□□ 2.03
PKNOX1-204ENST00000456957 TOP2BQ02880 1626 aa27.73■■■□□ 2.03
PKNOX1-204ENST00000456957 FGD5Q6ZNL6 1462 aa27.61■■■□□ 2.01
PKNOX1-204ENST00000456957 POLA1P09884 1462 aaPredicted RBP27.58■■■□□ 2.01
PKNOX1-204ENST00000456957 CHIC1Q5VXU3 224 aa27.51■■□□□ 1.99
PKNOX1-204ENST00000456957 TARBP1Q13395 1621 aaKnown RBP27.49■■□□□ 1.99
PKNOX1-204ENST00000456957 WDR97A6NE52 1622 aa27.46■■□□□ 1.99
PKNOX1-204ENST00000456957 RAD54L2Q9Y4B4 1467 aa27.45■■□□□ 1.99
PKNOX1-204ENST00000456957 TRIM41Q8WV44 630 aa27.45■■□□□ 1.98
PKNOX1-204ENST00000456957 IFT140Q96RY7 1462 aa27.44■■□□□ 1.98
PKNOX1-204ENST00000456957 SOGA1O94964 1423 aa27.42■■□□□ 1.98
PKNOX1-204ENST00000456957 ABCA10Q8WWZ4 1543 aa27.35■■□□□ 1.97
PKNOX1-204ENST00000456957 ZNF608Q9ULD9 1512 aaPredicted RBP27.31■■□□□ 1.96
PKNOX1-204ENST00000456957 EIF4G3O43432 1585 aaKnown RBP27.28■■□□□ 1.96
PKNOX1-204ENST00000456957 ABCA5Q8WWZ7 1642 aa27.27■■□□□ 1.96
PKNOX1-204ENST00000456957 TDRD9Q8NDG6 1382 aaKnown RBP27.22■■□□□ 1.95
PKNOX1-204ENST00000456957 PBRM1Q86U86 1689 aa27.2■■□□□ 1.94
PKNOX1-204ENST00000456957 AQRO60306 1485 aaKnown RBP eCLIP27.19■■□□□ 1.94
PKNOX1-204ENST00000456957 GAPVD1Q14C86 1478 aa27.15■■□□□ 1.94
PKNOX1-204ENST00000456957 KIF27Q86VH2 1401 aa27.14■■□□□ 1.93
PKNOX1-204ENST00000456957 RUSC2Q8N2Y8 1516 aa27.12■■□□□ 1.93
PKNOX1-204ENST00000456957 GRIN2BQ13224 1484 aa27.06■■□□□ 1.92
PKNOX1-204ENST00000456957 ERICH3Q5RHP9 1530 aa27.04■■□□□ 1.92
PKNOX1-204ENST00000456957 EEA1Q15075 1411 aa26.99■■□□□ 1.91
PKNOX1-204ENST00000456957 SNAPC4Q5SXM2 1469 aa26.99■■□□□ 1.91
PKNOX1-204ENST00000456957 CUL7Q14999 1698 aa26.96■■□□□ 1.91
PKNOX1-204ENST00000456957 ADAMTS12P58397 1594 aa26.96■■□□□ 1.91
PKNOX1-204ENST00000456957 IGF1RP08069 1367 aa26.95■■□□□ 1.9
PKNOX1-204ENST00000456957 MAGI1Q96QZ7 1491 aaPredicted RBP26.94■■□□□ 1.9
PKNOX1-204ENST00000456957 FAM9AQ8IZU1 332 aaPredicted RBP26.9■■□□□ 1.9
PKNOX1-204ENST00000456957 CHD1O14646 1710 aa26.88■■□□□ 1.89
PKNOX1-204ENST00000456957 FHAD1B1AJZ9 1412 aa26.84■■□□□ 1.89
PKNOX1-204ENST00000456957 SYNJ2O15056 1496 aa26.84■■□□□ 1.89
PKNOX1-204ENST00000456957 CSRNP3Q8WYN3 585 aa26.83■■□□□ 1.89
PKNOX1-204ENST00000456957 CARMIL1Q5VZK9 1371 aa26.8■■□□□ 1.88
PKNOX1-204ENST00000456957 PRXQ9BXM0 1461 aa26.79■■□□□ 1.88
PKNOX1-204ENST00000456957 KIF21BO75037 1637 aa26.76■■□□□ 1.87
PKNOX1-204ENST00000456957 GRIN2AQ12879 1464 aa26.74■■□□□ 1.87
PKNOX1-204ENST00000456957 RAPGEF2Q9Y4G8 1499 aa26.74■■□□□ 1.87
PKNOX1-204ENST00000456957 CHMP7Q8WUX9 453 aaPredicted RBP26.7■■□□□ 1.86
PKNOX1-204ENST00000456957 FBLN2P98095 1184 aa26.69■■□□□ 1.86
PKNOX1-204ENST00000456957 CEP170Q5SW79 1584 aa26.63■■□□□ 1.85
PKNOX1-204ENST00000456957 OSCARQ8IYS5 282 aa26.63■■□□□ 1.85
PKNOX1-204ENST00000456957 GOLGA3Q08378 1498 aa26.6■■□□□ 1.85
PKNOX1-204ENST00000456957 CTTNBP2Q8WZ74 1663 aa26.6■■□□□ 1.85
PKNOX1-204ENST00000456957 NUP160Q12769 1436 aa26.59■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms