RNA–Protein interactions for RNA: ENST00000456545.5

PDLIM2-215, Transcript of PDZ and LIM domain 2, human

TSL 5

Gene PDLIM2, Length 757 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM2-215	ENST00000456545	NISCH	Q9Y2I1	1504 aa		43.75	■■■■■ 4.59
PDLIM2-215	ENST00000456545	CCDC180	Q9P1Z9	1646 aa		38.92	■■■■□ 3.82
PDLIM2-215	ENST00000456545	ABCC9	O60706	1549 aa		38.33	■■■■□ 3.73
PDLIM2-215	ENST00000456545	DCAF8L2	P0C7V8	631 aa		36.93	■■■■□ 3.5
PDLIM2-215	ENST00000456545	RB1CC1	Q8TDY2	1594 aa		36.78	■■■■□ 3.48
PDLIM2-215	ENST00000456545	NACAD	O15069	1562 aa		36.67	■■■■□ 3.46
PDLIM2-215	ENST00000456545	ZCCHC6	Q5VYS8	1495 aa	Known RBP	36.37	■■■■□ 3.41
PDLIM2-215	ENST00000456545	MYO15B	Q96JP2	1530 aa		36.33	■■■■□ 3.41
PDLIM2-215	ENST00000456545	DCAF1	Q9Y4B6	1507 aa		36.13	■■■■□ 3.38
PDLIM2-215	ENST00000456545	PABPN1	Q86U42	306 aa	Known RBP eCLIP	35.87	■■■■□ 3.33
PDLIM2-215	ENST00000456545	UNC13A	Q9UPW8	1703 aa		35.86	■■■■□ 3.33
PDLIM2-215	ENST00000456545	SCRIB	Q14160	1630 aa		35.57	■■■■□ 3.29
PDLIM2-215	ENST00000456545	BICRA	Q9NZM4	1560 aa		35.56	■■■■□ 3.28
PDLIM2-215	ENST00000456545	DNAJC5B	Q9UF47	199 aa		35.29	■■■■□ 3.24
PDLIM2-215	ENST00000456545	SHROOM4	Q9ULL8	1493 aa		35.18	■■■■□ 3.22
PDLIM2-215	ENST00000456545	EIF4G1	Q04637	1599 aa	Known RBP	34.7	■■■■□ 3.14
PDLIM2-215	ENST00000456545	CC2D2A	Q9P2K1	1620 aa		34.62	■■■■□ 3.13
PDLIM2-215	ENST00000456545	CECR2	Q9BXF3	1484 aa		34.45	■■■■□ 3.1
PDLIM2-215	ENST00000456545	SMARCA4	P51532	1647 aa		33.97	■■■■□ 3.03
PDLIM2-215	ENST00000456545	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	33.94	■■■■□ 3.02
PDLIM2-215	ENST00000456545	NCAPD3	P42695	1498 aa		33.83	■■■■□ 3.01
PDLIM2-215	ENST00000456545	ATAD2B	Q9ULI0	1458 aa		33.83	■■■■□ 3.01
PDLIM2-215	ENST00000456545	SMARCA2	P51531	1590 aa		33.81	■■■■□ 3
PDLIM2-215	ENST00000456545	MROH2B	Q7Z745	1585 aa		33.72	■■■□□ 2.99
PDLIM2-215	ENST00000456545	HMGXB3	Q12766	1538 aa		33.62	■■■□□ 2.97
PDLIM2-215	ENST00000456545	BAZ1B	Q9UIG0	1483 aa	Known RBP	33.61	■■■□□ 2.97
PDLIM2-215	ENST00000456545	PEG3	Q9GZU2	1588 aa		33.57	■■■□□ 2.96
PDLIM2-215	ENST00000456545	WIZ	O95785	1651 aa		33.37	■■■□□ 2.93
PDLIM2-215	ENST00000456545	RSF1	Q96T23	1441 aa	Predicted RBP	33.29	■■■□□ 2.92
PDLIM2-215	ENST00000456545	ERCC6	Q03468	1493 aa		33.11	■■■□□ 2.89
PDLIM2-215	ENST00000456545	NES	P48681	1621 aa		33.09	■■■□□ 2.89
PDLIM2-215	ENST00000456545	TOP2A	P11388	1531 aa	Known RBP	32.98	■■■□□ 2.87
PDLIM2-215	ENST00000456545	LAMC3	Q9Y6N6	1575 aa		32.98	■■■□□ 2.87
PDLIM2-215	ENST00000456545	CADPS	Q9ULU8	1353 aa		32.9	■■■□□ 2.86
PDLIM2-215	ENST00000456545	PDS5B	Q9NTI5	1447 aa		32.84	■■■□□ 2.85
PDLIM2-215	ENST00000456545	CUX2	O14529	1486 aa		32.7	■■■□□ 2.83
PDLIM2-215	ENST00000456545	KIF21A	Q7Z4S6	1674 aa		32.67	■■■□□ 2.82
PDLIM2-215	ENST00000456545	CCDC88B	A6NC98	1476 aa		32.64	■■■□□ 2.82
PDLIM2-215	ENST00000456545	CFTR	P13569	1480 aa		32.61	■■■□□ 2.81
PDLIM2-215	ENST00000456545	SUPT5H	O00267	1087 aa	Known RBP	32.58	■■■□□ 2.81
PDLIM2-215	ENST00000456545	THOC2	Q8NI27	1593 aa	Known RBP	32.53	■■■□□ 2.8
PDLIM2-215	ENST00000456545	FANCD2	Q9BXW9	1451 aa		32.51	■■■□□ 2.79
PDLIM2-215	ENST00000456545	CEP164	Q9UPV0	1460 aa		32.49	■■■□□ 2.79
PDLIM2-215	ENST00000456545	MRC2	Q9UBG0	1479 aa		32.45	■■■□□ 2.79
PDLIM2-215	ENST00000456545	PRDM2	Q13029	1718 aa		32.34	■■■□□ 2.77
PDLIM2-215	ENST00000456545	WDR62	O43379	1518 aa		32.28	■■■□□ 2.76
PDLIM2-215	ENST00000456545	URB2	Q14146	1524 aa	Known RBP	32.15	■■■□□ 2.74
PDLIM2-215	ENST00000456545	ABCC8	Q09428	1581 aa		31.99	■■■□□ 2.71
PDLIM2-215	ENST00000456545	TOPBP1	Q92547	1522 aa		31.95	■■■□□ 2.7
PDLIM2-215	ENST00000456545	DNAJC5	Q9H3Z4	198 aa		31.94	■■■□□ 2.7
PDLIM2-215	ENST00000456545	DNMBP	Q6XZF7	1577 aa		31.89	■■■□□ 2.7
PDLIM2-215	ENST00000456545	IFT140	Q96RY7	1462 aa		31.81	■■■□□ 2.68
PDLIM2-215	ENST00000456545	POLA1	P09884	1462 aa	Predicted RBP	31.65	■■■□□ 2.66
PDLIM2-215	ENST00000456545	ZNF608	Q9ULD9	1512 aa	Predicted RBP	31.65	■■■□□ 2.66
PDLIM2-215	ENST00000456545	CUX1	P39880	1505 aa		31.63	■■■□□ 2.65
PDLIM2-215	ENST00000456545	SOGA1	O94964	1423 aa		31.62	■■■□□ 2.65
PDLIM2-215	ENST00000456545	FGD5	Q6ZNL6	1462 aa		31.59	■■■□□ 2.65
PDLIM2-215	ENST00000456545	RAD54L2	Q9Y4B4	1467 aa		31.57	■■■□□ 2.64
PDLIM2-215	ENST00000456545	TARBP1	Q13395	1621 aa	Known RBP	31.56	■■■□□ 2.64
PDLIM2-215	ENST00000456545	AQR	O60306	1485 aa	Known RBP eCLIP	31.51	■■■□□ 2.63
PDLIM2-215	ENST00000456545	EIF4G3	O43432	1585 aa	Known RBP	31.49	■■■□□ 2.63
PDLIM2-215	ENST00000456545	OSCAR	Q8IYS5	282 aa		31.48	■■■□□ 2.63
PDLIM2-215	ENST00000456545	TDRD9	Q8NDG6	1382 aa	Known RBP	31.45	■■■□□ 2.63
PDLIM2-215	ENST00000456545	WRN	Q14191	1432 aa	Predicted RBP eCLIP	31.45	■■■□□ 2.63
PDLIM2-215	ENST00000456545	FBLN2	P98095	1184 aa		31.33	■■■□□ 2.61
PDLIM2-215	ENST00000456545	TOP2B	Q02880	1626 aa		31.33	■■■□□ 2.61
PDLIM2-215	ENST00000456545	WDR97	A6NE52	1622 aa		31.31	■■■□□ 2.6
PDLIM2-215	ENST00000456545	BIVM-ERCC5	R4GMW8	1640 aa		31.31	■■■□□ 2.6
PDLIM2-215	ENST00000456545	SYNJ1	O43426	1573 aa		31.3	■■■□□ 2.6
PDLIM2-215	ENST00000456545	ABCA10	Q8WWZ4	1543 aa		31.24	■■■□□ 2.59
PDLIM2-215	ENST00000456545	GRIN2B	Q13224	1484 aa		31.22	■■■□□ 2.59
PDLIM2-215	ENST00000456545	GAPVD1	Q14C86	1478 aa		31.21	■■■□□ 2.59
PDLIM2-215	ENST00000456545	SNAPC4	Q5SXM2	1469 aa		31.19	■■■□□ 2.58
PDLIM2-215	ENST00000456545	CHMP7	Q8WUX9	453 aa	Predicted RBP	31.18	■■■□□ 2.58
PDLIM2-215	ENST00000456545	CHD1	O14646	1710 aa		31.15	■■■□□ 2.58
PDLIM2-215	ENST00000456545	MAGI1	Q96QZ7	1491 aa	Predicted RBP	31.13	■■■□□ 2.57
PDLIM2-215	ENST00000456545	PBRM1	Q86U86	1689 aa		31.1	■■■□□ 2.57
PDLIM2-215	ENST00000456545	ABCA5	Q8WWZ7	1642 aa		31.09	■■■□□ 2.57
PDLIM2-215	ENST00000456545	SYNJ2	O15056	1496 aa		31.01	■■■□□ 2.56
PDLIM2-215	ENST00000456545	TRIM41	Q8WV44	630 aa		30.97	■■■□□ 2.55
PDLIM2-215	ENST00000456545	ERICH3	Q5RHP9	1530 aa		30.88	■■■□□ 2.53
PDLIM2-215	ENST00000456545	FHAD1	B1AJZ9	1412 aa		30.84	■■■□□ 2.53
PDLIM2-215	ENST00000456545	RIMBP3C	A6NJZ7	1639 aa		30.84	■■■□□ 2.53
PDLIM2-215	ENST00000456545	RIMBP3B	A6NNM3	1639 aa		30.84	■■■□□ 2.53
PDLIM2-215	ENST00000456545	RIMBP3	Q9UFD9	1639 aa		30.84	■■■□□ 2.53
PDLIM2-215	ENST00000456545	KIF27	Q86VH2	1401 aa		30.83	■■■□□ 2.53
PDLIM2-215	ENST00000456545	ADAMTS12	P58397	1594 aa		30.82	■■■□□ 2.52
PDLIM2-215	ENST00000456545	ARHGEF11	O15085	1522 aa		30.81	■■■□□ 2.52
PDLIM2-215	ENST00000456545	GRIN2A	Q12879	1464 aa		30.79	■■■□□ 2.52
PDLIM2-215	ENST00000456545	CLASP1	Q7Z460	1538 aa		30.75	■■■□□ 2.51
PDLIM2-215	ENST00000456545	CYB5RL	Q6IPT4	315 aa		30.71	■■■□□ 2.51
PDLIM2-215	ENST00000456545	IGF1R	P08069	1367 aa		30.69	■■■□□ 2.5
PDLIM2-215	ENST00000456545	NUP160	Q12769	1436 aa		30.62	■■■□□ 2.49
PDLIM2-215	ENST00000456545	CEP170	Q5SW79	1584 aa		30.61	■■■□□ 2.49
PDLIM2-215	ENST00000456545	CUL7	Q14999	1698 aa		30.58	■■■□□ 2.49
PDLIM2-215	ENST00000456545	CARMIL1	Q5VZK9	1371 aa		30.55	■■■□□ 2.48
PDLIM2-215	ENST00000456545	ARAP1	Q96P48	1450 aa		30.54	■■■□□ 2.48
PDLIM2-215	ENST00000456545	JPH4	Q96JJ6	628 aa		30.46	■■■□□ 2.47
PDLIM2-215	ENST00000456545	RUSC2	Q8N2Y8	1516 aa		30.46	■■■□□ 2.47
PDLIM2-215	ENST00000456545	SHROOM2	Q13796	1616 aa		30.37	■■■□□ 2.45

Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms