RNA–Protein interactions for RNA: ENST00000456542.5

SP140-207, Transcript of SP140 nuclear body protein, humanhuman

TSL 4

Gene SP140, Length 580 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SP140-207ENST00000456542 NISCHQ9Y2I1 1504 aa20.68■□□□□ 0.9
SP140-207ENST00000456542 CCDC180Q9P1Z9 1646 aa18.44■□□□□ 0.54
SP140-207ENST00000456542 ABCC9O60706 1549 aa17.9■□□□□ 0.46
SP140-207ENST00000456542 AEBP2Q6ZN18 517 aaPredicted RBP17.35■□□□□ 0.37
SP140-207ENST00000456542 RB1CC1Q8TDY2 1594 aa17.3■□□□□ 0.36
SP140-207ENST00000456542 NACADO15069 1562 aa17.29■□□□□ 0.36
SP140-207ENST00000456542 ZCCHC6Q5VYS8 1495 aaKnown RBP17.24■□□□□ 0.35
SP140-207ENST00000456542 MYO15BQ96JP2 1530 aa17.23■□□□□ 0.35
SP140-207ENST00000456542 DCAF1Q9Y4B6 1507 aa17.16■□□□□ 0.34
SP140-207ENST00000456542 DCAF8L2P0C7V8 631 aa17.15■□□□□ 0.34
SP140-207ENST00000456542 UNC13AQ9UPW8 1703 aa16.93■□□□□ 0.3
SP140-207ENST00000456542 BICRAQ9NZM4 1560 aa16.76■□□□□ 0.27
SP140-207ENST00000456542 SCRIBQ14160 1630 aa16.74■□□□□ 0.27
SP140-207ENST00000456542 PABPN1Q86U42 306 aaKnown RBP eCLIP16.68■□□□□ 0.26
SP140-207ENST00000456542 SHROOM4Q9ULL8 1493 aa16.65■□□□□ 0.26
SP140-207ENST00000456542 DNAJC5BQ9UF47 199 aa16.36■□□□□ 0.21
SP140-207ENST00000456542 EIF4G1Q04637 1599 aaKnown RBP16.31■□□□□ 0.2
SP140-207ENST00000456542 CHIC1Q5VXU3 224 aa16.31■□□□□ 0.2
SP140-207ENST00000456542 CC2D2AQ9P2K1 1620 aa16.23■□□□□ 0.19
SP140-207ENST00000456542 CECR2Q9BXF3 1484 aa16.1■□□□□ 0.17
SP140-207ENST00000456542 SMARCA4P51532 1647 aa16.05■□□□□ 0.16
SP140-207ENST00000456542 BAZ1AQ9NRL2 1556 aaPredicted RBP16.04■□□□□ 0.16
SP140-207ENST00000456542 SMARCA2P51531 1590 aa15.95■□□□□ 0.14
SP140-207ENST00000456542 NCAPD3P42695 1498 aa15.94■□□□□ 0.14
SP140-207ENST00000456542 ATAD2BQ9ULI0 1458 aa15.93■□□□□ 0.14
SP140-207ENST00000456542 PEG3Q9GZU2 1588 aa15.92■□□□□ 0.14
SP140-207ENST00000456542 MROH2BQ7Z745 1585 aa15.92■□□□□ 0.14
SP140-207ENST00000456542 HMGXB3Q12766 1538 aa15.89■□□□□ 0.13
SP140-207ENST00000456542 BAZ1BQ9UIG0 1483 aaKnown RBP15.81■□□□□ 0.12
SP140-207ENST00000456542 WIZO95785 1651 aa15.76■□□□□ 0.11
SP140-207ENST00000456542 RSF1Q96T23 1441 aaPredicted RBP15.75■□□□□ 0.11
SP140-207ENST00000456542 TOP2AP11388 1531 aaKnown RBP15.62■□□□□ 0.09
SP140-207ENST00000456542 LAMC3Q9Y6N6 1575 aa15.53■□□□□ 0.08
SP140-207ENST00000456542 NESP48681 1621 aa15.5■□□□□ 0.07
SP140-207ENST00000456542 CADPSQ9ULU8 1353 aa15.45■□□□□ 0.06
SP140-207ENST00000456542 ERCC6Q03468 1493 aa15.44■□□□□ 0.06
SP140-207ENST00000456542 PDS5BQ9NTI5 1447 aa15.39■□□□□ 0.05
SP140-207ENST00000456542 CCDC88BA6NC98 1476 aa15.39■□□□□ 0.05
SP140-207ENST00000456542 CFTRP13569 1480 aa15.39■□□□□ 0.05
SP140-207ENST00000456542 KIF21AQ7Z4S6 1674 aa15.38■□□□□ 0.05
SP140-207ENST00000456542 PRDM2Q13029 1718 aa15.34■□□□□ 0.05
SP140-207ENST00000456542 THOC2Q8NI27 1593 aaKnown RBP15.32■□□□□ 0.04
SP140-207ENST00000456542 CUX2O14529 1486 aa15.31■□□□□ 0.04
SP140-207ENST00000456542 SUPT5HO00267 1087 aaKnown RBP15.3■□□□□ 0.04
SP140-207ENST00000456542 FANCD2Q9BXW9 1451 aa15.27■□□□□ 0.04
SP140-207ENST00000456542 CEP164Q9UPV0 1460 aa15.27■□□□□ 0.03
SP140-207ENST00000456542 MRC2Q9UBG0 1479 aa15.24■□□□□ 0.03
SP140-207ENST00000456542 WDR62O43379 1518 aa15.21■□□□□ 0.03
SP140-207ENST00000456542 URB2Q14146 1524 aaKnown RBP15.12■□□□□ 0.01
SP140-207ENST00000456542 ABCC8Q09428 1581 aa15.07■□□□□ 0
SP140-207ENST00000456542 TOPBP1Q92547 1522 aa15.05■□□□□ -0
SP140-207ENST00000456542 DNMBPQ6XZF7 1577 aa15.05■□□□□ -0
SP140-207ENST00000456542 DNAJC5Q9H3Z4 198 aa15.04■□□□□ -0
SP140-207ENST00000456542 IFT140Q96RY7 1462 aa14.95□□□□□ -0.02
SP140-207ENST00000456542 CUX1P39880 1505 aa14.93□□□□□ -0.02
SP140-207ENST00000456542 POLA1P09884 1462 aaPredicted RBP14.92□□□□□ -0.02
SP140-207ENST00000456542 TARBP1Q13395 1621 aaKnown RBP14.9□□□□□ -0.02
SP140-207ENST00000456542 FGD5Q6ZNL6 1462 aa14.89□□□□□ -0.03
SP140-207ENST00000456542 BIVM-ERCC5R4GMW8 1640 aa14.86□□□□□ -0.03
SP140-207ENST00000456542 WRNQ14191 1432 aaPredicted RBP eCLIP14.85□□□□□ -0.03
SP140-207ENST00000456542 ZNF608Q9ULD9 1512 aaPredicted RBP14.85□□□□□ -0.03
SP140-207ENST00000456542 TOP2BQ02880 1626 aa14.84□□□□□ -0.03
SP140-207ENST00000456542 SOGA1O94964 1423 aa14.83□□□□□ -0.03
SP140-207ENST00000456542 EIF4G3O43432 1585 aaKnown RBP14.83□□□□□ -0.04
SP140-207ENST00000456542 WDR97A6NE52 1622 aa14.83□□□□□ -0.04
SP140-207ENST00000456542 SYNJ1O43426 1573 aa14.82□□□□□ -0.04
SP140-207ENST00000456542 RAD54L2Q9Y4B4 1467 aa14.82□□□□□ -0.04
SP140-207ENST00000456542 ABCA10Q8WWZ4 1543 aa14.76□□□□□ -0.05
SP140-207ENST00000456542 AQRO60306 1485 aaKnown RBP eCLIP14.76□□□□□ -0.05
SP140-207ENST00000456542 TDRD9Q8NDG6 1382 aaKnown RBP14.73□□□□□ -0.05
SP140-207ENST00000456542 ABCA5Q8WWZ7 1642 aa14.71□□□□□ -0.05
SP140-207ENST00000456542 SENP3Q9H4L4 574 aaPredicted RBP14.71□□□□□ -0.05
SP140-207ENST00000456542 PBRM1Q86U86 1689 aa14.69□□□□□ -0.06
SP140-207ENST00000456542 GRIN2BQ13224 1484 aa14.69□□□□□ -0.06
SP140-207ENST00000456542 GAPVD1Q14C86 1478 aa14.68□□□□□ -0.06
SP140-207ENST00000456542 MAGI1Q96QZ7 1491 aaPredicted RBP14.66□□□□□ -0.06
SP140-207ENST00000456542 CHD1O14646 1710 aa14.65□□□□□ -0.06
SP140-207ENST00000456542 SNAPC4Q5SXM2 1469 aa14.64□□□□□ -0.07
SP140-207ENST00000456542 OSCARQ8IYS5 282 aa14.63□□□□□ -0.07
SP140-207ENST00000456542 SYNJ2O15056 1496 aa14.59□□□□□ -0.07
SP140-207ENST00000456542 ERICH3Q5RHP9 1530 aa14.59□□□□□ -0.07
SP140-207ENST00000456542 ADAMTS12P58397 1594 aa14.56□□□□□ -0.08
SP140-207ENST00000456542 PHF23Q9BUL5 403 aaPredicted RBP14.55□□□□□ -0.08
SP140-207ENST00000456542 FBLN2P98095 1184 aa14.54□□□□□ -0.08
SP140-207ENST00000456542 KIF27Q86VH2 1401 aa14.54□□□□□ -0.08
SP140-207ENST00000456542 CHMP7Q8WUX9 453 aaPredicted RBP14.53□□□□□ -0.08
SP140-207ENST00000456542 FHAD1B1AJZ9 1412 aa14.52□□□□□ -0.08
SP140-207ENST00000456542 GRIN2AQ12879 1464 aa14.5□□□□□ -0.09
SP140-207ENST00000456542 CUL7Q14999 1698 aa14.49□□□□□ -0.09
SP140-207ENST00000456542 CLASP1Q7Z460 1538 aa14.48□□□□□ -0.09
SP140-207ENST00000456542 TRIM41Q8WV44 630 aa14.47□□□□□ -0.09
SP140-207ENST00000456542 IGF1RP08069 1367 aa14.46□□□□□ -0.1
SP140-207ENST00000456542 NUP160Q12769 1436 aa14.44□□□□□ -0.1
SP140-207ENST00000456542 CEP170Q5SW79 1584 aa14.43□□□□□ -0.1
SP140-207ENST00000456542 ARHGEF11O15085 1522 aa14.42□□□□□ -0.1
SP140-207ENST00000456542 RIMBP3CA6NJZ7 1639 aa14.42□□□□□ -0.1
SP140-207ENST00000456542 RIMBP3BA6NNM3 1639 aa14.42□□□□□ -0.1
SP140-207ENST00000456542 RIMBP3Q9UFD9 1639 aa14.42□□□□□ -0.1
SP140-207ENST00000456542 RUSC2Q8N2Y8 1516 aa14.38□□□□□ -0.11
SP140-207ENST00000456542 CARMIL1Q5VZK9 1371 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms