RNA–Protein interactions for RNA: ENST00000456506.2

LMCD1-206, Transcript of LIM and cysteine rich domains 1, humanhuman

TSL 2

Gene LMCD1, Length 1,059 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMCD1-206ENST00000456506 NISCHQ9Y2I1 1504 aa30.54■■■□□ 2.48
LMCD1-206ENST00000456506 CCDC180Q9P1Z9 1646 aa27.6■■■□□ 2.01
LMCD1-206ENST00000456506 ABCC9O60706 1549 aa27.53■■■□□ 2
LMCD1-206ENST00000456506 RB1CC1Q8TDY2 1594 aa26.21■■□□□ 1.79
LMCD1-206ENST00000456506 NACADO15069 1562 aa26.01■■□□□ 1.75
LMCD1-206ENST00000456506 DNAJC5BQ9UF47 199 aa25.97■■□□□ 1.75
LMCD1-206ENST00000456506 UNC13AQ9UPW8 1703 aa25.89■■□□□ 1.74
LMCD1-206ENST00000456506 MYO15BQ96JP2 1530 aa25.63■■□□□ 1.69
LMCD1-206ENST00000456506 BICRAQ9NZM4 1560 aa25.57■■□□□ 1.68
LMCD1-206ENST00000456506 DCAF8L2P0C7V8 631 aa25.51■■□□□ 1.67
LMCD1-206ENST00000456506 PABPN1Q86U42 306 aaKnown RBP eCLIP25.5■■□□□ 1.67
LMCD1-206ENST00000456506 ZCCHC6Q5VYS8 1495 aaKnown RBP25.3■■□□□ 1.64
LMCD1-206ENST00000456506 DCAF1Q9Y4B6 1507 aa25.27■■□□□ 1.64
LMCD1-206ENST00000456506 SHROOM4Q9ULL8 1493 aa25.11■■□□□ 1.61
LMCD1-206ENST00000456506 SCRIBQ14160 1630 aa25.02■■□□□ 1.6
LMCD1-206ENST00000456506 CC2D2AQ9P2K1 1620 aa24.97■■□□□ 1.59
LMCD1-206ENST00000456506 EIF4G1Q04637 1599 aaKnown RBP24.88■■□□□ 1.57
LMCD1-206ENST00000456506 CECR2Q9BXF3 1484 aa24.81■■□□□ 1.56
LMCD1-206ENST00000456506 NCAPD3P42695 1498 aa23.98■■□□□ 1.43
LMCD1-206ENST00000456506 SMARCA4P51532 1647 aa23.91■■□□□ 1.42
LMCD1-206ENST00000456506 DNAJC5Q9H3Z4 198 aa23.89■■□□□ 1.41
LMCD1-206ENST00000456506 ATAD2BQ9ULI0 1458 aa23.88■■□□□ 1.41
LMCD1-206ENST00000456506 HMGXB3Q12766 1538 aa23.84■■□□□ 1.41
LMCD1-206ENST00000456506 SMARCA2P51531 1590 aa23.81■■□□□ 1.4
LMCD1-206ENST00000456506 CUX2O14529 1486 aa23.81■■□□□ 1.4
LMCD1-206ENST00000456506 PEG3Q9GZU2 1588 aa23.72■■□□□ 1.39
LMCD1-206ENST00000456506 BAZ1AQ9NRL2 1556 aaPredicted RBP23.7■■□□□ 1.38
LMCD1-206ENST00000456506 ERCC6Q03468 1493 aa23.69■■□□□ 1.38
LMCD1-206ENST00000456506 NESP48681 1621 aa23.66■■□□□ 1.38
LMCD1-206ENST00000456506 BAZ1BQ9UIG0 1483 aaKnown RBP23.6■■□□□ 1.37
LMCD1-206ENST00000456506 THOC2Q8NI27 1593 aaKnown RBP23.57■■□□□ 1.36
LMCD1-206ENST00000456506 MROH2BQ7Z745 1585 aa23.53■■□□□ 1.36
LMCD1-206ENST00000456506 LAMC3Q9Y6N6 1575 aa23.51■■□□□ 1.35
LMCD1-206ENST00000456506 KIF21AQ7Z4S6 1674 aa23.5■■□□□ 1.35
LMCD1-206ENST00000456506 WIZO95785 1651 aa23.31■■□□□ 1.32
LMCD1-206ENST00000456506 PDS5BQ9NTI5 1447 aa23.24■■□□□ 1.31
LMCD1-206ENST00000456506 CADPSQ9ULU8 1353 aa23.17■■□□□ 1.3
LMCD1-206ENST00000456506 WDR62O43379 1518 aa23.15■■□□□ 1.3
LMCD1-206ENST00000456506 MRC2Q9UBG0 1479 aa23.11■■□□□ 1.29
LMCD1-206ENST00000456506 CEP164Q9UPV0 1460 aa22.98■■□□□ 1.27
LMCD1-206ENST00000456506 PRDM2Q13029 1718 aa22.96■■□□□ 1.27
LMCD1-206ENST00000456506 TOP2AP11388 1531 aaKnown RBP22.95■■□□□ 1.26
LMCD1-206ENST00000456506 CFTRP13569 1480 aa22.95■■□□□ 1.26
LMCD1-206ENST00000456506 FANCD2Q9BXW9 1451 aa22.94■■□□□ 1.26
LMCD1-206ENST00000456506 RSF1Q96T23 1441 aaPredicted RBP22.93■■□□□ 1.26
LMCD1-206ENST00000456506 URB2Q14146 1524 aaKnown RBP22.83■■□□□ 1.25
LMCD1-206ENST00000456506 TRIM41Q8WV44 630 aa22.66■■□□□ 1.22
LMCD1-206ENST00000456506 CCDC88BA6NC98 1476 aa22.64■■□□□ 1.21
LMCD1-206ENST00000456506 ZNF608Q9ULD9 1512 aaPredicted RBP22.55■■□□□ 1.2
LMCD1-206ENST00000456506 TOPBP1Q92547 1522 aa22.54■■□□□ 1.2
LMCD1-206ENST00000456506 OSCARQ8IYS5 282 aa22.54■■□□□ 1.2
LMCD1-206ENST00000456506 IFT140Q96RY7 1462 aa22.52■■□□□ 1.2
LMCD1-206ENST00000456506 RIMBP3CA6NJZ7 1639 aa22.51■■□□□ 1.19
LMCD1-206ENST00000456506 RIMBP3BA6NNM3 1639 aa22.51■■□□□ 1.19
LMCD1-206ENST00000456506 RIMBP3Q9UFD9 1639 aa22.51■■□□□ 1.19
LMCD1-206ENST00000456506 EIF4G3O43432 1585 aaKnown RBP22.5■■□□□ 1.19
LMCD1-206ENST00000456506 DNMBPQ6XZF7 1577 aa22.47■■□□□ 1.19
LMCD1-206ENST00000456506 TARBP1Q13395 1621 aaKnown RBP22.46■■□□□ 1.19
LMCD1-206ENST00000456506 CHD1O14646 1710 aa22.43■■□□□ 1.18
LMCD1-206ENST00000456506 ABCC8Q09428 1581 aa22.42■■□□□ 1.18
LMCD1-206ENST00000456506 ARHGEF11O15085 1522 aa22.36■■□□□ 1.17
LMCD1-206ENST00000456506 POLA1P09884 1462 aaPredicted RBP22.29■■□□□ 1.16
LMCD1-206ENST00000456506 AQRO60306 1485 aaKnown RBP eCLIP22.27■■□□□ 1.16
LMCD1-206ENST00000456506 WDR97A6NE52 1622 aa22.18■■□□□ 1.14
LMCD1-206ENST00000456506 RAD54L2Q9Y4B4 1467 aa22.18■■□□□ 1.14
LMCD1-206ENST00000456506 ARAP1Q96P48 1450 aa22.14■■□□□ 1.13
LMCD1-206ENST00000456506 CUX1P39880 1505 aa22.12■■□□□ 1.13
LMCD1-206ENST00000456506 FGD5Q6ZNL6 1462 aa22.12■■□□□ 1.13
LMCD1-206ENST00000456506 SOGA1O94964 1423 aa22.1■■□□□ 1.13
LMCD1-206ENST00000456506 CLASP1Q7Z460 1538 aa22.1■■□□□ 1.13
LMCD1-206ENST00000456506 PBRM1Q86U86 1689 aa22.07■■□□□ 1.12
LMCD1-206ENST00000456506 TDRD9Q8NDG6 1382 aaKnown RBP22.06■■□□□ 1.12
LMCD1-206ENST00000456506 SNAPC4Q5SXM2 1469 aa22.06■■□□□ 1.12
LMCD1-206ENST00000456506 CYB5RLQ6IPT4 315 aa22.02■■□□□ 1.12
LMCD1-206ENST00000456506 MAGI1Q96QZ7 1491 aaPredicted RBP22.01■■□□□ 1.11
LMCD1-206ENST00000456506 SYNJ1O43426 1573 aa21.99■■□□□ 1.11
LMCD1-206ENST00000456506 ABCA5Q8WWZ7 1642 aa21.97■■□□□ 1.11
LMCD1-206ENST00000456506 FBLN2P98095 1184 aa21.96■■□□□ 1.11
LMCD1-206ENST00000456506 GRIN2BQ13224 1484 aa21.96■■□□□ 1.11
LMCD1-206ENST00000456506 SYNJ2O15056 1496 aa21.92■■□□□ 1.1
LMCD1-206ENST00000456506 ABCA10Q8WWZ4 1543 aa21.87■■□□□ 1.09
LMCD1-206ENST00000456506 GAPVD1Q14C86 1478 aa21.86■■□□□ 1.09
LMCD1-206ENST00000456506 BIVM-ERCC5R4GMW8 1640 aa21.83■■□□□ 1.08
LMCD1-206ENST00000456506 CHMP7Q8WUX9 453 aaPredicted RBP21.81■■□□□ 1.08
LMCD1-206ENST00000456506 ADAMTS12P58397 1594 aa21.77■■□□□ 1.08
LMCD1-206ENST00000456506 TOP2BQ02880 1626 aa21.76■■□□□ 1.07
LMCD1-206ENST00000456506 TRHP20396 242 aaPredicted RBP21.75■■□□□ 1.07
LMCD1-206ENST00000456506 ERCC6L2Q5T890 1561 aa21.74■■□□□ 1.07
LMCD1-206ENST00000456506 CEP170Q5SW79 1584 aa21.72■■□□□ 1.07
LMCD1-206ENST00000456506 GRIN2AQ12879 1464 aa21.71■■□□□ 1.07
LMCD1-206ENST00000456506 SHROOM2Q13796 1616 aa21.71■■□□□ 1.07
LMCD1-206ENST00000456506 NUP160Q12769 1436 aa21.66■■□□□ 1.06
LMCD1-206ENST00000456506 WRNQ14191 1432 aaPredicted RBP eCLIP21.65■■□□□ 1.06
LMCD1-206ENST00000456506 ERICH3Q5RHP9 1530 aa21.6■■□□□ 1.05
LMCD1-206ENST00000456506 SUPT5HO00267 1087 aaKnown RBP21.6■■□□□ 1.05
LMCD1-206ENST00000456506 FHAD1B1AJZ9 1412 aa21.56■■□□□ 1.04
LMCD1-206ENST00000456506 KIF13AQ9H1H9 1805 aa21.56■■□□□ 1.04
LMCD1-206ENST00000456506 RUSC2Q8N2Y8 1516 aa21.49■■□□□ 1.03
LMCD1-206ENST00000456506 PRG4Q92954 1404 aaPredicted RBP21.38■■□□□ 1.01
LMCD1-206ENST00000456506 CUL7Q14999 1698 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 189 ms