RNA–Protein interactions for RNA: ENST00000456246.1

MSH6-207, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 846 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-207ENST00000456246 NISCHQ9Y2I1 1504 aa44.08■■■■■ 4.65
MSH6-207ENST00000456246 CCDC180Q9P1Z9 1646 aa39.43■■■■□ 3.9
MSH6-207ENST00000456246 ABCC9O60706 1549 aa38.85■■■■□ 3.81
MSH6-207ENST00000456246 RB1CC1Q8TDY2 1594 aa37.3■■■■□ 3.56
MSH6-207ENST00000456246 NACADO15069 1562 aa37.17■■■■□ 3.54
MSH6-207ENST00000456246 DCAF8L2P0C7V8 631 aa36.88■■■■□ 3.49
MSH6-207ENST00000456246 MYO15BQ96JP2 1530 aa36.86■■■■□ 3.49
MSH6-207ENST00000456246 ZCCHC6Q5VYS8 1495 aaKnown RBP36.65■■■■□ 3.46
MSH6-207ENST00000456246 DCAF1Q9Y4B6 1507 aa36.53■■■■□ 3.44
MSH6-207ENST00000456246 UNC13AQ9UPW8 1703 aa36.36■■■■□ 3.41
MSH6-207ENST00000456246 PABPN1Q86U42 306 aaKnown RBP eCLIP36.18■■■■□ 3.38
MSH6-207ENST00000456246 BICRAQ9NZM4 1560 aa36.1■■■■□ 3.37
MSH6-207ENST00000456246 DNAJC5BQ9UF47 199 aa35.94■■■■□ 3.34
MSH6-207ENST00000456246 SHROOM4Q9ULL8 1493 aa35.87■■■■□ 3.33
MSH6-207ENST00000456246 SCRIBQ14160 1630 aa35.84■■■■□ 3.33
MSH6-207ENST00000456246 EIF4G1Q04637 1599 aaKnown RBP35.22■■■■□ 3.23
MSH6-207ENST00000456246 CC2D2AQ9P2K1 1620 aa35.16■■■■□ 3.22
MSH6-207ENST00000456246 CECR2Q9BXF3 1484 aa35■■■■□ 3.19
MSH6-207ENST00000456246 SMARCA4P51532 1647 aa34.29■■■■□ 3.08
MSH6-207ENST00000456246 NCAPD3P42695 1498 aa34.27■■■■□ 3.08
MSH6-207ENST00000456246 BAZ1AQ9NRL2 1556 aaPredicted RBP34.23■■■■□ 3.07
MSH6-207ENST00000456246 ATAD2BQ9ULI0 1458 aa34.2■■■■□ 3.07
MSH6-207ENST00000456246 SMARCA2P51531 1590 aa34.2■■■■□ 3.07
MSH6-207ENST00000456246 HMGXB3Q12766 1538 aa34.09■■■■□ 3.05
MSH6-207ENST00000456246 PEG3Q9GZU2 1588 aa34.01■■■■□ 3.03
MSH6-207ENST00000456246 MROH2BQ7Z745 1585 aa33.91■■■■□ 3.02
MSH6-207ENST00000456246 BAZ1BQ9UIG0 1483 aaKnown RBP33.91■■■■□ 3.02
MSH6-207ENST00000456246 ERCC6Q03468 1493 aa33.58■■■□□ 2.97
MSH6-207ENST00000456246 WIZO95785 1651 aa33.52■■■□□ 2.96
MSH6-207ENST00000456246 NESP48681 1621 aa33.47■■■□□ 2.95
MSH6-207ENST00000456246 LAMC3Q9Y6N6 1575 aa33.46■■■□□ 2.95
MSH6-207ENST00000456246 CUX2O14529 1486 aa33.43■■■□□ 2.94
MSH6-207ENST00000456246 RSF1Q96T23 1441 aaPredicted RBP33.39■■■□□ 2.94
MSH6-207ENST00000456246 PDS5BQ9NTI5 1447 aa33.25■■■□□ 2.91
MSH6-207ENST00000456246 CADPSQ9ULU8 1353 aa33.23■■■□□ 2.91
MSH6-207ENST00000456246 TOP2AP11388 1531 aaKnown RBP33.22■■■□□ 2.91
MSH6-207ENST00000456246 THOC2Q8NI27 1593 aaKnown RBP33.13■■■□□ 2.89
MSH6-207ENST00000456246 KIF21AQ7Z4S6 1674 aa33.1■■■□□ 2.89
MSH6-207ENST00000456246 CFTRP13569 1480 aa32.96■■■□□ 2.87
MSH6-207ENST00000456246 MRC2Q9UBG0 1479 aa32.91■■■□□ 2.86
MSH6-207ENST00000456246 CEP164Q9UPV0 1460 aa32.88■■■□□ 2.85
MSH6-207ENST00000456246 FANCD2Q9BXW9 1451 aa32.85■■■□□ 2.85
MSH6-207ENST00000456246 WDR62O43379 1518 aa32.82■■■□□ 2.84
MSH6-207ENST00000456246 DNAJC5Q9H3Z4 198 aa32.79■■■□□ 2.84
MSH6-207ENST00000456246 CCDC88BA6NC98 1476 aa32.77■■■□□ 2.84
MSH6-207ENST00000456246 PRDM2Q13029 1718 aa32.71■■■□□ 2.83
MSH6-207ENST00000456246 URB2Q14146 1524 aaKnown RBP32.51■■■□□ 2.8
MSH6-207ENST00000456246 ABCC8Q09428 1581 aa32.33■■■□□ 2.77
MSH6-207ENST00000456246 TOPBP1Q92547 1522 aa32.27■■■□□ 2.76
MSH6-207ENST00000456246 DNMBPQ6XZF7 1577 aa32.23■■■□□ 2.75
MSH6-207ENST00000456246 IFT140Q96RY7 1462 aa32.22■■■□□ 2.75
MSH6-207ENST00000456246 SUPT5HO00267 1087 aaKnown RBP32.17■■■□□ 2.74
MSH6-207ENST00000456246 ZNF608Q9ULD9 1512 aaPredicted RBP32.01■■■□□ 2.72
MSH6-207ENST00000456246 POLA1P09884 1462 aaPredicted RBP31.97■■■□□ 2.71
MSH6-207ENST00000456246 TARBP1Q13395 1621 aaKnown RBP31.95■■■□□ 2.71
MSH6-207ENST00000456246 EIF4G3O43432 1585 aaKnown RBP31.93■■■□□ 2.7
MSH6-207ENST00000456246 OSCARQ8IYS5 282 aa31.91■■■□□ 2.7
MSH6-207ENST00000456246 CUX1P39880 1505 aa31.85■■■□□ 2.69
MSH6-207ENST00000456246 FGD5Q6ZNL6 1462 aa31.83■■■□□ 2.69
MSH6-207ENST00000456246 SOGA1O94964 1423 aa31.83■■■□□ 2.69
MSH6-207ENST00000456246 WDR97A6NE52 1622 aa31.79■■■□□ 2.68
MSH6-207ENST00000456246 AQRO60306 1485 aaKnown RBP eCLIP31.78■■■□□ 2.688e-7■■■□□ 19
MSH6-207ENST00000456246 RAD54L2Q9Y4B4 1467 aa31.78■■■□□ 2.68
MSH6-207ENST00000456246 TDRD9Q8NDG6 1382 aaKnown RBP31.66■■■□□ 2.66
MSH6-207ENST00000456246 CHD1O14646 1710 aa31.57■■■□□ 2.64
MSH6-207ENST00000456246 GRIN2BQ13224 1484 aa31.54■■■□□ 2.64
MSH6-207ENST00000456246 ABCA10Q8WWZ4 1543 aa31.54■■■□□ 2.64
MSH6-207ENST00000456246 WRNQ14191 1432 aaPredicted RBP eCLIP31.53■■■□□ 2.64
MSH6-207ENST00000456246 MAGI1Q96QZ7 1491 aaPredicted RBP31.52■■■□□ 2.64
MSH6-207ENST00000456246 TOP2BQ02880 1626 aa31.52■■■□□ 2.64
MSH6-207ENST00000456246 BIVM-ERCC5R4GMW8 1640 aa31.52■■■□□ 2.64
MSH6-207ENST00000456246 SNAPC4Q5SXM2 1469 aa31.52■■■□□ 2.64
MSH6-207ENST00000456246 FBLN2P98095 1184 aa31.48■■■□□ 2.63
MSH6-207ENST00000456246 TRIM41Q8WV44 630 aa31.48■■■□□ 2.63
MSH6-207ENST00000456246 GAPVD1Q14C86 1478 aa31.47■■■□□ 2.63
MSH6-207ENST00000456246 ABCA5Q8WWZ7 1642 aa31.44■■■□□ 2.62
MSH6-207ENST00000456246 SYNJ1O43426 1573 aa31.43■■■□□ 2.62
MSH6-207ENST00000456246 RIMBP3CA6NJZ7 1639 aa31.42■■■□□ 2.62
MSH6-207ENST00000456246 RIMBP3BA6NNM3 1639 aa31.42■■■□□ 2.62
MSH6-207ENST00000456246 RIMBP3Q9UFD9 1639 aa31.42■■■□□ 2.62
MSH6-207ENST00000456246 PBRM1Q86U86 1689 aa31.42■■■□□ 2.62
MSH6-207ENST00000456246 ARHGEF11O15085 1522 aa31.39■■■□□ 2.62
MSH6-207ENST00000456246 SYNJ2O15056 1496 aa31.39■■■□□ 2.62
MSH6-207ENST00000456246 CHMP7Q8WUX9 453 aaPredicted RBP31.37■■■□□ 2.61
MSH6-207ENST00000456246 CLASP1Q7Z460 1538 aa31.26■■■□□ 2.59
MSH6-207ENST00000456246 ERICH3Q5RHP9 1530 aa31.18■■■□□ 2.58
MSH6-207ENST00000456246 ADAMTS12P58397 1594 aa31.17■■■□□ 2.58
MSH6-207ENST00000456246 GRIN2AQ12879 1464 aa31.13■■■□□ 2.57
MSH6-207ENST00000456246 FHAD1B1AJZ9 1412 aa31.12■■■□□ 2.57
MSH6-207ENST00000456246 ARAP1Q96P48 1450 aa31.09■■■□□ 2.57
MSH6-207ENST00000456246 CYB5RLQ6IPT4 315 aa31.07■■■□□ 2.56
MSH6-207ENST00000456246 NUP160Q12769 1436 aa31.01■■■□□ 2.55
MSH6-207ENST00000456246 CEP170Q5SW79 1584 aa30.95■■■□□ 2.54
MSH6-207ENST00000456246 KIF27Q86VH2 1401 aa30.93■■■□□ 2.54
MSH6-207ENST00000456246 CUL7Q14999 1698 aa30.82■■■□□ 2.52
MSH6-207ENST00000456246 SHROOM2Q13796 1616 aa30.82■■■□□ 2.52
MSH6-207ENST00000456246 IGF1RP08069 1367 aa30.79■■■□□ 2.52
MSH6-207ENST00000456246 RUSC2Q8N2Y8 1516 aa30.72■■■□□ 2.51
MSH6-207ENST00000456246 ERCC6L2Q5T890 1561 aa30.71■■■□□ 2.51
MSH6-207ENST00000456246 JPH4Q96JJ6 628 aa30.65■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 138.6 ms