RNA–Protein interactions for RNA: ENST00000455656.1

TMEM56-202, Transcript of transmembrane protein 56, humanhuman

TSL 5

Gene TMEM56, Length 609 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-202ENST00000455656 NISCHQ9Y2I1 1504 aa29.38■■■□□ 2.29
TMEM56-202ENST00000455656 CCDC180Q9P1Z9 1646 aa26.24■■□□□ 1.79
TMEM56-202ENST00000455656 ABCC9O60706 1549 aa25.73■■□□□ 1.71
TMEM56-202ENST00000455656 RB1CC1Q8TDY2 1594 aa24.7■■□□□ 1.54
TMEM56-202ENST00000455656 NACADO15069 1562 aa24.64■■□□□ 1.54
TMEM56-202ENST00000455656 MYO15BQ96JP2 1530 aa24.48■■□□□ 1.51
TMEM56-202ENST00000455656 ZCCHC6Q5VYS8 1495 aaKnown RBP24.46■■□□□ 1.51
TMEM56-202ENST00000455656 DCAF8L2P0C7V8 631 aa24.41■■□□□ 1.5
TMEM56-202ENST00000455656 DCAF1Q9Y4B6 1507 aa24.32■■□□□ 1.48
TMEM56-202ENST00000455656 UNC13AQ9UPW8 1703 aa24.3■■□□□ 1.48
TMEM56-202ENST00000455656 BICRAQ9NZM4 1560 aa24.07■■□□□ 1.44
TMEM56-202ENST00000455656 PABPN1Q86U42 306 aaKnown RBP eCLIP23.97■■□□□ 1.43
TMEM56-202ENST00000455656 SCRIBQ14160 1630 aa23.88■■□□□ 1.41
TMEM56-202ENST00000455656 DNAJC5BQ9UF47 199 aa23.81■■□□□ 1.4
TMEM56-202ENST00000455656 SHROOM4Q9ULL8 1493 aa23.7■■□□□ 1.38
TMEM56-202ENST00000455656 EIF4G1Q04637 1599 aaKnown RBP23.38■■□□□ 1.33
TMEM56-202ENST00000455656 CC2D2AQ9P2K1 1620 aa23.33■■□□□ 1.32
TMEM56-202ENST00000455656 CECR2Q9BXF3 1484 aa23.13■■□□□ 1.29
TMEM56-202ENST00000455656 SMARCA4P51532 1647 aa22.86■■□□□ 1.25
TMEM56-202ENST00000455656 BAZ1AQ9NRL2 1556 aaPredicted RBP22.76■■□□□ 1.23
TMEM56-202ENST00000455656 NCAPD3P42695 1498 aa22.74■■□□□ 1.23
TMEM56-202ENST00000455656 ATAD2BQ9ULI0 1458 aa22.73■■□□□ 1.23
TMEM56-202ENST00000455656 SMARCA2P51531 1590 aa22.67■■□□□ 1.22
TMEM56-202ENST00000455656 MROH2BQ7Z745 1585 aa22.66■■□□□ 1.22
TMEM56-202ENST00000455656 PEG3Q9GZU2 1588 aa22.66■■□□□ 1.22
TMEM56-202ENST00000455656 HMGXB3Q12766 1538 aa22.64■■□□□ 1.21
TMEM56-202ENST00000455656 BAZ1BQ9UIG0 1483 aaKnown RBP22.5■■□□□ 1.19
TMEM56-202ENST00000455656 WIZO95785 1651 aa22.43■■□□□ 1.18
TMEM56-202ENST00000455656 RSF1Q96T23 1441 aaPredicted RBP22.31■■□□□ 1.16
TMEM56-202ENST00000455656 NESP48681 1621 aa22.27■■□□□ 1.16
TMEM56-202ENST00000455656 LAMC3Q9Y6N6 1575 aa22.18■■□□□ 1.14
TMEM56-202ENST00000455656 TOP2AP11388 1531 aaKnown RBP22.14■■□□□ 1.13
TMEM56-202ENST00000455656 ERCC6Q03468 1493 aa22.12■■□□□ 1.13
TMEM56-202ENST00000455656 KIF21AQ7Z4S6 1674 aa22.05■■□□□ 1.12
TMEM56-202ENST00000455656 CADPSQ9ULU8 1353 aa22.03■■□□□ 1.12
TMEM56-202ENST00000455656 THOC2Q8NI27 1593 aaKnown RBP22.02■■□□□ 1.12
TMEM56-202ENST00000455656 CUX2O14529 1486 aa22.02■■□□□ 1.12
TMEM56-202ENST00000455656 PDS5BQ9NTI5 1447 aa21.96■■□□□ 1.11
TMEM56-202ENST00000455656 CFTRP13569 1480 aa21.9■■□□□ 1.1
TMEM56-202ENST00000455656 CCDC88BA6NC98 1476 aa21.87■■□□□ 1.09
TMEM56-202ENST00000455656 PRDM2Q13029 1718 aa21.83■■□□□ 1.08
TMEM56-202ENST00000455656 FANCD2Q9BXW9 1451 aa21.79■■□□□ 1.08
TMEM56-202ENST00000455656 MRC2Q9UBG0 1479 aa21.79■■□□□ 1.08
TMEM56-202ENST00000455656 WDR62O43379 1518 aa21.77■■□□□ 1.08
TMEM56-202ENST00000455656 CEP164Q9UPV0 1460 aa21.77■■□□□ 1.07
TMEM56-202ENST00000455656 URB2Q14146 1524 aaKnown RBP21.64■■□□□ 1.05
TMEM56-202ENST00000455656 DNAJC5Q9H3Z4 198 aa21.5■■□□□ 1.03
TMEM56-202ENST00000455656 SUPT5HO00267 1087 aaKnown RBP21.48■■□□□ 1.03
TMEM56-202ENST00000455656 TOPBP1Q92547 1522 aa21.45■■□□□ 1.02
TMEM56-202ENST00000455656 DNMBPQ6XZF7 1577 aa21.43■■□□□ 1.02
TMEM56-202ENST00000455656 ABCC8Q09428 1581 aa21.38■■□□□ 1.01
TMEM56-202ENST00000455656 IFT140Q96RY7 1462 aa21.32■■□□□ 1
TMEM56-202ENST00000455656 TARBP1Q13395 1621 aaKnown RBP21.29■■□□□ 1
TMEM56-202ENST00000455656 ZNF608Q9ULD9 1512 aaPredicted RBP21.29■■□□□ 1
TMEM56-202ENST00000455656 POLA1P09884 1462 aaPredicted RBP21.26■□□□□ 0.99
TMEM56-202ENST00000455656 CUX1P39880 1505 aa21.26■□□□□ 0.99
TMEM56-202ENST00000455656 EIF4G3O43432 1585 aaKnown RBP21.22■□□□□ 0.99
TMEM56-202ENST00000455656 FGD5Q6ZNL6 1462 aa21.19■□□□□ 0.98
TMEM56-202ENST00000455656 RAD54L2Q9Y4B4 1467 aa21.17■□□□□ 0.98
TMEM56-202ENST00000455656 WDR97A6NE52 1622 aa21.12■□□□□ 0.97
TMEM56-202ENST00000455656 SOGA1O94964 1423 aa21.12■□□□□ 0.97
TMEM56-202ENST00000455656 AQRO60306 1485 aaKnown RBP eCLIP21.11■□□□□ 0.974e-6■□□□□ 10.8
TMEM56-202ENST00000455656 BIVM-ERCC5R4GMW8 1640 aa21.07■□□□□ 0.96
TMEM56-202ENST00000455656 SYNJ1O43426 1573 aa21.04■□□□□ 0.96
TMEM56-202ENST00000455656 TOP2BQ02880 1626 aa21.04■□□□□ 0.96
TMEM56-202ENST00000455656 TDRD9Q8NDG6 1382 aaKnown RBP21.02■□□□□ 0.96
TMEM56-202ENST00000455656 CHD1O14646 1710 aa21.01■□□□□ 0.95
TMEM56-202ENST00000455656 WRNQ14191 1432 aaPredicted RBP eCLIP20.99■□□□□ 0.95
TMEM56-202ENST00000455656 OSCARQ8IYS5 282 aa20.99■□□□□ 0.95
TMEM56-202ENST00000455656 ABCA10Q8WWZ4 1543 aa20.98■□□□□ 0.95
TMEM56-202ENST00000455656 ABCA5Q8WWZ7 1642 aa20.96■□□□□ 0.95
TMEM56-202ENST00000455656 PBRM1Q86U86 1689 aa20.96■□□□□ 0.95
TMEM56-202ENST00000455656 SNAPC4Q5SXM2 1469 aa20.92■□□□□ 0.94
TMEM56-202ENST00000455656 GRIN2BQ13224 1484 aa20.9■□□□□ 0.94
TMEM56-202ENST00000455656 GAPVD1Q14C86 1478 aa20.88■□□□□ 0.93
TMEM56-202ENST00000455656 MAGI1Q96QZ7 1491 aaPredicted RBP20.88■□□□□ 0.93
TMEM56-202ENST00000455656 RIMBP3CA6NJZ7 1639 aa20.82■□□□□ 0.92
TMEM56-202ENST00000455656 RIMBP3BA6NNM3 1639 aa20.82■□□□□ 0.92
TMEM56-202ENST00000455656 RIMBP3Q9UFD9 1639 aa20.82■□□□□ 0.92
TMEM56-202ENST00000455656 SYNJ2O15056 1496 aa20.8■□□□□ 0.92
TMEM56-202ENST00000455656 CLASP1Q7Z460 1538 aa20.77■□□□□ 0.92
TMEM56-202ENST00000455656 FBLN2P98095 1184 aa20.76■□□□□ 0.91
TMEM56-202ENST00000455656 ARHGEF11O15085 1522 aa20.76■□□□□ 0.91
TMEM56-202ENST00000455656 ADAMTS12P58397 1594 aa20.75■□□□□ 0.91
TMEM56-202ENST00000455656 ERICH3Q5RHP9 1530 aa20.72■□□□□ 0.91
TMEM56-202ENST00000455656 CHMP7Q8WUX9 453 aaPredicted RBP20.7■□□□□ 0.9
TMEM56-202ENST00000455656 GRIN2AQ12879 1464 aa20.66■□□□□ 0.9
TMEM56-202ENST00000455656 TRIM41Q8WV44 630 aa20.64■□□□□ 0.89
TMEM56-202ENST00000455656 FHAD1B1AJZ9 1412 aa20.63■□□□□ 0.89
TMEM56-202ENST00000455656 CEP170Q5SW79 1584 aa20.62■□□□□ 0.89
TMEM56-202ENST00000455656 ARAP1Q96P48 1450 aa20.61■□□□□ 0.89
TMEM56-202ENST00000455656 NUP160Q12769 1436 aa20.6■□□□□ 0.89
TMEM56-202ENST00000455656 KIF27Q86VH2 1401 aa20.53■□□□□ 0.88
TMEM56-202ENST00000455656 SHROOM2Q13796 1616 aa20.52■□□□□ 0.88
TMEM56-202ENST00000455656 CUL7Q14999 1698 aa20.51■□□□□ 0.87
TMEM56-202ENST00000455656 IGF1RP08069 1367 aa20.51■□□□□ 0.87
TMEM56-202ENST00000455656 ERCC6L2Q5T890 1561 aa20.49■□□□□ 0.87
TMEM56-202ENST00000455656 CYB5RLQ6IPT4 315 aa20.46■□□□□ 0.87
TMEM56-202ENST00000455656 RUSC2Q8N2Y8 1516 aa20.46■□□□□ 0.87
TMEM56-202ENST00000455656 CARMIL1Q5VZK9 1371 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms