RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 NISCHQ9Y2I1 1504 aa52.34■■■■■ 5.97
HMGB3-205ENST00000455596 CCDC180Q9P1Z9 1646 aa46.83■■■■■ 5.09
HMGB3-205ENST00000455596 ABCC9O60706 1549 aa46.13■■■■■ 4.98
HMGB3-205ENST00000455596 RB1CC1Q8TDY2 1594 aa44.25■■■■■ 4.67
HMGB3-205ENST00000455596 NACADO15069 1562 aa44.07■■■■■ 4.65
HMGB3-205ENST00000455596 DCAF8L2P0C7V8 631 aa43.86■■■■■ 4.61
HMGB3-205ENST00000455596 MYO15BQ96JP2 1530 aa43.63■■■■■ 4.58
HMGB3-205ENST00000455596 ZCCHC6Q5VYS8 1495 aaKnown RBP43.51■■■■■ 4.56
HMGB3-205ENST00000455596 UNC13AQ9UPW8 1703 aa43.36■■■■■ 4.53
HMGB3-205ENST00000455596 DCAF1Q9Y4B6 1507 aa43.29■■■■■ 4.52
HMGB3-205ENST00000455596 PABPN1Q86U42 306 aaKnown RBP eCLIP42.97■■■■■ 4.47
HMGB3-205ENST00000455596 BICRAQ9NZM4 1560 aa42.9■■■■■ 4.46
HMGB3-205ENST00000455596 DNAJC5BQ9UF47 199 aa42.66■■■■■ 4.42
HMGB3-205ENST00000455596 SCRIBQ14160 1630 aa42.64■■■■■ 4.42
HMGB3-205ENST00000455596 SHROOM4Q9ULL8 1493 aa42.4■■■■■ 4.38
HMGB3-205ENST00000455596 EIF4G1Q04637 1599 aaKnown RBP41.8■■■■■ 4.28
HMGB3-205ENST00000455596 CC2D2AQ9P2K1 1620 aa41.77■■■■■ 4.28
HMGB3-205ENST00000455596 CECR2Q9BXF3 1484 aa41.49■■■■■ 4.23
HMGB3-205ENST00000455596 SMARCA4P51532 1647 aa40.75■■■■■ 4.11
HMGB3-205ENST00000455596 BAZ1AQ9NRL2 1556 aaPredicted RBP40.63■■■■■ 4.09
HMGB3-205ENST00000455596 NCAPD3P42695 1498 aa40.61■■■■■ 4.09
HMGB3-205ENST00000455596 ATAD2BQ9ULI0 1458 aa40.58■■■■■ 4.09
HMGB3-205ENST00000455596 SMARCA2P51531 1590 aa40.56■■■■■ 4.08
HMGB3-205ENST00000455596 HMGXB3Q12766 1538 aa40.42■■■■■ 4.06
HMGB3-205ENST00000455596 PEG3Q9GZU2 1588 aa40.35■■■■■ 4.05
HMGB3-205ENST00000455596 MROH2BQ7Z745 1585 aa40.32■■■■■ 4.05
HMGB3-205ENST00000455596 BAZ1BQ9UIG0 1483 aaKnown RBP40.25■■■■■ 4.03
HMGB3-205ENST00000455596 WIZO95785 1651 aa39.94■■■■□ 3.98
HMGB3-205ENST00000455596 ERCC6Q03468 1493 aa39.81■■■■□ 3.96
HMGB3-205ENST00000455596 NESP48681 1621 aa39.79■■■■□ 3.96
HMGB3-205ENST00000455596 LAMC3Q9Y6N6 1575 aa39.69■■■■□ 3.94
HMGB3-205ENST00000455596 RSF1Q96T23 1441 aaPredicted RBP39.66■■■■□ 3.94
HMGB3-205ENST00000455596 CUX2O14529 1486 aa39.56■■■■□ 3.92
HMGB3-205ENST00000455596 TOP2AP11388 1531 aaKnown RBP39.45■■■■□ 3.91
HMGB3-205ENST00000455596 KIF21AQ7Z4S6 1674 aa39.43■■■■□ 3.9
HMGB3-205ENST00000455596 CADPSQ9ULU8 1353 aa39.39■■■■□ 3.9
HMGB3-205ENST00000455596 PDS5BQ9NTI5 1447 aa39.37■■■■□ 3.89
HMGB3-205ENST00000455596 THOC2Q8NI27 1593 aaKnown RBP39.35■■■■□ 3.89
HMGB3-205ENST00000455596 CFTRP13569 1480 aa39.09■■■■□ 3.85
HMGB3-205ENST00000455596 MRC2Q9UBG0 1479 aa39.01■■■■□ 3.84
HMGB3-205ENST00000455596 CEP164Q9UPV0 1460 aa38.98■■■■□ 3.83
HMGB3-205ENST00000455596 FANCD2Q9BXW9 1451 aa38.98■■■■□ 3.83
HMGB3-205ENST00000455596 PRDM2Q13029 1718 aa38.97■■■■□ 3.83
HMGB3-205ENST00000455596 CCDC88BA6NC98 1476 aa38.94■■■■□ 3.82
HMGB3-205ENST00000455596 WDR62O43379 1518 aa38.92■■■■□ 3.82
HMGB3-205ENST00000455596 DNAJC5Q9H3Z4 198 aa38.79■■■■□ 3.8
HMGB3-205ENST00000455596 URB2Q14146 1524 aaKnown RBP38.61■■■■□ 3.77
HMGB3-205ENST00000455596 SUPT5HO00267 1087 aaKnown RBP38.33■■■■□ 3.73
HMGB3-205ENST00000455596 TOPBP1Q92547 1522 aa38.32■■■■□ 3.72
HMGB3-205ENST00000455596 ABCC8Q09428 1581 aa38.31■■■■□ 3.72
HMGB3-205ENST00000455596 DNMBPQ6XZF7 1577 aa38.26■■■■□ 3.72
HMGB3-205ENST00000455596 IFT140Q96RY7 1462 aa38.17■■■■□ 3.7
HMGB3-205ENST00000455596 ZNF608Q9ULD9 1512 aaPredicted RBP38.02■■■■□ 3.68
HMGB3-205ENST00000455596 TARBP1Q13395 1621 aaKnown RBP37.97■■■■□ 3.67
HMGB3-205ENST00000455596 POLA1P09884 1462 aaPredicted RBP37.95■■■■□ 3.67
HMGB3-205ENST00000455596 EIF4G3O43432 1585 aaKnown RBP37.93■■■■□ 3.66
HMGB3-205ENST00000455596 CUX1P39880 1505 aa37.86■■■■□ 3.65
HMGB3-205ENST00000455596 FGD5Q6ZNL6 1462 aa37.8■■■■□ 3.64
HMGB3-205ENST00000455596 OSCARQ8IYS5 282 aa37.79■■■■□ 3.64
HMGB3-205ENST00000455596 SOGA1O94964 1423 aa37.78■■■■□ 3.64
HMGB3-205ENST00000455596 RAD54L2Q9Y4B4 1467 aa37.77■■■■□ 3.64
HMGB3-205ENST00000455596 AQRO60306 1485 aaKnown RBP eCLIP37.74■■■■□ 3.633e-6■■■■□ 24.7
HMGB3-205ENST00000455596 WDR97A6NE52 1622 aa37.67■■■■□ 3.62
HMGB3-205ENST00000455596 CHD1O14646 1710 aa37.6■■■■□ 3.61
HMGB3-205ENST00000455596 TDRD9Q8NDG6 1382 aaKnown RBP37.59■■■■□ 3.61
HMGB3-205ENST00000455596 BIVM-ERCC5R4GMW8 1640 aa37.5■■■■□ 3.59
HMGB3-205ENST00000455596 TOP2BQ02880 1626 aa37.46■■■■□ 3.59
HMGB3-205ENST00000455596 WRNQ14191 1432 aaPredicted RBP eCLIP37.44■■■■□ 3.58
HMGB3-205ENST00000455596 PBRM1Q86U86 1689 aa37.43■■■■□ 3.58
HMGB3-205ENST00000455596 ABCA10Q8WWZ4 1543 aa37.41■■■■□ 3.58
HMGB3-205ENST00000455596 SNAPC4Q5SXM2 1469 aa37.41■■■■□ 3.58
HMGB3-205ENST00000455596 SYNJ1O43426 1573 aa37.41■■■■□ 3.58
HMGB3-205ENST00000455596 GRIN2BQ13224 1484 aa37.4■■■■□ 3.58
HMGB3-205ENST00000455596 FBLN2P98095 1184 aa37.38■■■■□ 3.57
HMGB3-205ENST00000455596 MAGI1Q96QZ7 1491 aaPredicted RBP37.36■■■■□ 3.57
HMGB3-205ENST00000455596 ABCA5Q8WWZ7 1642 aa37.36■■■■□ 3.57
HMGB3-205ENST00000455596 GAPVD1Q14C86 1478 aa37.34■■■■□ 3.57
HMGB3-205ENST00000455596 TRIM41Q8WV44 630 aa37.34■■■■□ 3.57
HMGB3-205ENST00000455596 RIMBP3CA6NJZ7 1639 aa37.33■■■■□ 3.57
HMGB3-205ENST00000455596 RIMBP3BA6NNM3 1639 aa37.33■■■■□ 3.57
HMGB3-205ENST00000455596 RIMBP3Q9UFD9 1639 aa37.33■■■■□ 3.57
HMGB3-205ENST00000455596 ARHGEF11O15085 1522 aa37.23■■■■□ 3.55
HMGB3-205ENST00000455596 SYNJ2O15056 1496 aa37.21■■■■□ 3.55
HMGB3-205ENST00000455596 CHMP7Q8WUX9 453 aaPredicted RBP37.2■■■■□ 3.55
HMGB3-205ENST00000455596 CLASP1Q7Z460 1538 aa37.09■■■■□ 3.53
HMGB3-205ENST00000455596 ADAMTS12P58397 1594 aa37.02■■■■□ 3.52
HMGB3-205ENST00000455596 ERICH3Q5RHP9 1530 aa36.98■■■■□ 3.51
HMGB3-205ENST00000455596 GRIN2AQ12879 1464 aa36.93■■■■□ 3.5
HMGB3-205ENST00000455596 FHAD1B1AJZ9 1412 aa36.89■■■■□ 3.5
HMGB3-205ENST00000455596 ARAP1Q96P48 1450 aa36.88■■■■□ 3.5
HMGB3-205ENST00000455596 CYB5RLQ6IPT4 315 aa36.85■■■■□ 3.49
HMGB3-205ENST00000455596 CEP170Q5SW79 1584 aa36.79■■■■□ 3.48
HMGB3-205ENST00000455596 NUP160Q12769 1436 aa36.76■■■■□ 3.47
HMGB3-205ENST00000455596 KIF27Q86VH2 1401 aa36.69■■■■□ 3.46
HMGB3-205ENST00000455596 CUL7Q14999 1698 aa36.62■■■■□ 3.45
HMGB3-205ENST00000455596 SHROOM2Q13796 1616 aa36.61■■■■□ 3.45
HMGB3-205ENST00000455596 IGF1RP08069 1367 aa36.55■■■■□ 3.44
HMGB3-205ENST00000455596 ERCC6L2Q5T890 1561 aa36.53■■■■□ 3.44
HMGB3-205ENST00000455596 RUSC2Q8N2Y8 1516 aa36.49■■■■□ 3.43
HMGB3-205ENST00000455596 JPH4Q96JJ6 628 aa36.36■■■■□ 3.41
Retrieved 100 of 20,778 RNA–protein pairs in 131 ms