RNA–Protein interactions for RNA: ENST00000455548.2

SMPD4-214, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 3

Gene SMPD4, Length 547 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-214ENST00000455548 NISCHQ9Y2I1 1504 aa39.65■■■■□ 3.94
SMPD4-214ENST00000455548 CCDC180Q9P1Z9 1646 aa35.35■■■■□ 3.25
SMPD4-214ENST00000455548 ABCC9O60706 1549 aa34.61■■■■□ 3.13
SMPD4-214ENST00000455548 RB1CC1Q8TDY2 1594 aa33.31■■■□□ 2.92
SMPD4-214ENST00000455548 NACADO15069 1562 aa33.24■■■□□ 2.91
SMPD4-214ENST00000455548 DCAF8L2P0C7V8 631 aa33.13■■■□□ 2.89
SMPD4-214ENST00000455548 MYO15BQ96JP2 1530 aa33.02■■■□□ 2.88
SMPD4-214ENST00000455548 ZCCHC6Q5VYS8 1495 aaKnown RBP33■■■□□ 2.87
SMPD4-214ENST00000455548 DCAF1Q9Y4B6 1507 aa32.83■■■□□ 2.85
SMPD4-214ENST00000455548 UNC13AQ9UPW8 1703 aa32.54■■■□□ 2.8
SMPD4-214ENST00000455548 PABPN1Q86U42 306 aaKnown RBP eCLIP32.29■■■□□ 2.76
SMPD4-214ENST00000455548 BICRAQ9NZM4 1560 aa32.26■■■□□ 2.75
SMPD4-214ENST00000455548 SCRIBQ14160 1630 aa32.19■■■□□ 2.74
SMPD4-214ENST00000455548 SHROOM4Q9ULL8 1493 aa31.98■■■□□ 2.71
SMPD4-214ENST00000455548 DNAJC5BQ9UF47 199 aa31.81■■■□□ 2.68
SMPD4-214ENST00000455548 EIF4G1Q04637 1599 aaKnown RBP31.43■■■□□ 2.62
SMPD4-214ENST00000455548 CC2D2AQ9P2K1 1620 aa31.32■■■□□ 2.6
SMPD4-214ENST00000455548 CECR2Q9BXF3 1484 aa31.13■■■□□ 2.57
SMPD4-214ENST00000455548 SMARCA4P51532 1647 aa30.8■■■□□ 2.52
SMPD4-214ENST00000455548 BAZ1AQ9NRL2 1556 aaPredicted RBP30.76■■■□□ 2.52
SMPD4-214ENST00000455548 NCAPD3P42695 1498 aa30.64■■■□□ 2.5
SMPD4-214ENST00000455548 SMARCA2P51531 1590 aa30.64■■■□□ 2.5
SMPD4-214ENST00000455548 ATAD2BQ9ULI0 1458 aa30.63■■■□□ 2.49
SMPD4-214ENST00000455548 MROH2BQ7Z745 1585 aa30.54■■■□□ 2.48
SMPD4-214ENST00000455548 HMGXB3Q12766 1538 aa30.52■■■□□ 2.48
SMPD4-214ENST00000455548 PEG3Q9GZU2 1588 aa30.51■■■□□ 2.47
SMPD4-214ENST00000455548 BAZ1BQ9UIG0 1483 aaKnown RBP30.4■■■□□ 2.46
SMPD4-214ENST00000455548 WIZO95785 1651 aa30.2■■■□□ 2.43
SMPD4-214ENST00000455548 RSF1Q96T23 1441 aaPredicted RBP30.14■■■□□ 2.42
SMPD4-214ENST00000455548 NESP48681 1621 aa29.91■■■□□ 2.38
SMPD4-214ENST00000455548 TOP2AP11388 1531 aaKnown RBP29.91■■■□□ 2.38
SMPD4-214ENST00000455548 LAMC3Q9Y6N6 1575 aa29.89■■■□□ 2.38
SMPD4-214ENST00000455548 ERCC6Q03468 1493 aa29.88■■■□□ 2.37
SMPD4-214ENST00000455548 CADPSQ9ULU8 1353 aa29.75■■■□□ 2.35
SMPD4-214ENST00000455548 PDS5BQ9NTI5 1447 aa29.68■■■□□ 2.34
SMPD4-214ENST00000455548 CUX2O14529 1486 aa29.61■■■□□ 2.33
SMPD4-214ENST00000455548 KIF21AQ7Z4S6 1674 aa29.6■■■□□ 2.33
SMPD4-214ENST00000455548 CFTRP13569 1480 aa29.55■■■□□ 2.32
SMPD4-214ENST00000455548 CCDC88BA6NC98 1476 aa29.53■■■□□ 2.32
SMPD4-214ENST00000455548 THOC2Q8NI27 1593 aaKnown RBP29.52■■■□□ 2.32
SMPD4-214ENST00000455548 FANCD2Q9BXW9 1451 aa29.41■■■□□ 2.3
SMPD4-214ENST00000455548 CEP164Q9UPV0 1460 aa29.4■■■□□ 2.3
SMPD4-214ENST00000455548 PRDM2Q13029 1718 aa29.39■■■□□ 2.3
SMPD4-214ENST00000455548 MRC2Q9UBG0 1479 aa29.36■■■□□ 2.29
SMPD4-214ENST00000455548 SUPT5HO00267 1087 aaKnown RBP29.29■■■□□ 2.28
SMPD4-214ENST00000455548 WDR62O43379 1518 aa29.26■■■□□ 2.27
SMPD4-214ENST00000455548 URB2Q14146 1524 aaKnown RBP29.11■■■□□ 2.25
SMPD4-214ENST00000455548 ABCC8Q09428 1581 aa28.96■■■□□ 2.23
SMPD4-214ENST00000455548 TOPBP1Q92547 1522 aa28.93■■■□□ 2.22
SMPD4-214ENST00000455548 DNMBPQ6XZF7 1577 aa28.91■■■□□ 2.22
SMPD4-214ENST00000455548 DNAJC5Q9H3Z4 198 aa28.79■■■□□ 2.2
SMPD4-214ENST00000455548 IFT140Q96RY7 1462 aa28.78■■■□□ 2.2
SMPD4-214ENST00000455548 POLA1P09884 1462 aaPredicted RBP28.67■■■□□ 2.18
SMPD4-214ENST00000455548 CUX1P39880 1505 aa28.66■■■□□ 2.18
SMPD4-214ENST00000455548 TARBP1Q13395 1621 aaKnown RBP28.63■■■□□ 2.17
SMPD4-214ENST00000455548 ZNF608Q9ULD9 1512 aaPredicted RBP28.62■■■□□ 2.17
SMPD4-214ENST00000455548 FGD5Q6ZNL6 1462 aa28.58■■■□□ 2.17
SMPD4-214ENST00000455548 SOGA1O94964 1423 aa28.55■■■□□ 2.16
SMPD4-214ENST00000455548 EIF4G3O43432 1585 aaKnown RBP28.54■■■□□ 2.16
SMPD4-214ENST00000455548 RAD54L2Q9Y4B4 1467 aa28.53■■■□□ 2.16
SMPD4-214ENST00000455548 AQRO60306 1485 aaKnown RBP eCLIP28.45■■■□□ 2.146e-8■■■■□ 25
SMPD4-214ENST00000455548 WRNQ14191 1432 aaPredicted RBP eCLIP28.44■■■□□ 2.14
SMPD4-214ENST00000455548 WDR97A6NE52 1622 aa28.44■■■□□ 2.14
SMPD4-214ENST00000455548 BIVM-ERCC5R4GMW8 1640 aa28.42■■■□□ 2.14
SMPD4-214ENST00000455548 TOP2BQ02880 1626 aa28.41■■■□□ 2.14
SMPD4-214ENST00000455548 TDRD9Q8NDG6 1382 aaKnown RBP28.38■■■□□ 2.13
SMPD4-214ENST00000455548 SYNJ1O43426 1573 aa28.37■■■□□ 2.13
SMPD4-214ENST00000455548 OSCARQ8IYS5 282 aa28.34■■■□□ 2.13
SMPD4-214ENST00000455548 ABCA10Q8WWZ4 1543 aa28.33■■■□□ 2.13
SMPD4-214ENST00000455548 GRIN2BQ13224 1484 aa28.26■■■□□ 2.11
SMPD4-214ENST00000455548 GAPVD1Q14C86 1478 aa28.23■■■□□ 2.11
SMPD4-214ENST00000455548 ABCA5Q8WWZ7 1642 aa28.22■■■□□ 2.11
SMPD4-214ENST00000455548 CHD1O14646 1710 aa28.21■■■□□ 2.11
SMPD4-214ENST00000455548 PBRM1Q86U86 1689 aa28.2■■■□□ 2.11
SMPD4-214ENST00000455548 SNAPC4Q5SXM2 1469 aa28.2■■■□□ 2.1
SMPD4-214ENST00000455548 MAGI1Q96QZ7 1491 aaPredicted RBP28.2■■■□□ 2.1
SMPD4-214ENST00000455548 FBLN2P98095 1184 aa28.14■■■□□ 2.1
SMPD4-214ENST00000455548 SYNJ2O15056 1496 aa28.08■■■□□ 2.09
SMPD4-214ENST00000455548 CHMP7Q8WUX9 453 aaPredicted RBP28.06■■■□□ 2.08
SMPD4-214ENST00000455548 ERICH3Q5RHP9 1530 aa27.99■■■□□ 2.07
SMPD4-214ENST00000455548 ADAMTS12P58397 1594 aa27.95■■■□□ 2.07
SMPD4-214ENST00000455548 RIMBP3CA6NJZ7 1639 aa27.91■■■□□ 2.06
SMPD4-214ENST00000455548 RIMBP3BA6NNM3 1639 aa27.91■■■□□ 2.06
SMPD4-214ENST00000455548 RIMBP3Q9UFD9 1639 aa27.91■■■□□ 2.06
SMPD4-214ENST00000455548 FHAD1B1AJZ9 1412 aa27.91■■■□□ 2.06
SMPD4-214ENST00000455548 CLASP1Q7Z460 1538 aa27.89■■■□□ 2.06
SMPD4-214ENST00000455548 ARHGEF11O15085 1522 aa27.88■■■□□ 2.05
SMPD4-214ENST00000455548 KIF27Q86VH2 1401 aa27.87■■■□□ 2.05
SMPD4-214ENST00000455548 GRIN2AQ12879 1464 aa27.87■■■□□ 2.05
SMPD4-214ENST00000455548 TRIM41Q8WV44 630 aa27.78■■■□□ 2.04
SMPD4-214ENST00000455548 IGF1RP08069 1367 aa27.75■■■□□ 2.03
SMPD4-214ENST00000455548 NUP160Q12769 1436 aa27.75■■■□□ 2.03
SMPD4-214ENST00000455548 CUL7Q14999 1698 aa27.74■■■□□ 2.03
SMPD4-214ENST00000455548 CEP170Q5SW79 1584 aa27.73■■■□□ 2.03
SMPD4-214ENST00000455548 ARAP1Q96P48 1450 aa27.64■■■□□ 2.02
SMPD4-214ENST00000455548 CYB5RLQ6IPT4 315 aa27.61■■■□□ 2.01
SMPD4-214ENST00000455548 CARMIL1Q5VZK9 1371 aa27.6■■■□□ 2.01
SMPD4-214ENST00000455548 SHROOM2Q13796 1616 aa27.57■■■□□ 2
SMPD4-214ENST00000455548 RUSC2Q8N2Y8 1516 aa27.54■■■□□ 2
SMPD4-214ENST00000455548 KIAA0586Q9BVV6 1533 aa27.47■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 98.3 ms