RNA–Protein interactions for RNA: ENST00000455383.5

MSH6-206, Transcript of mutS homolog 6, humanhuman

TSL 5

Gene MSH6, Length 578 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-206ENST00000455383 NISCHQ9Y2I1 1504 aa47.4■■■■■ 5.18
MSH6-206ENST00000455383 ABCC9O60706 1549 aa42.8■■■■■ 4.44
MSH6-206ENST00000455383 CCDC180Q9P1Z9 1646 aa42.62■■■■■ 4.41
MSH6-206ENST00000455383 RB1CC1Q8TDY2 1594 aa40.66■■■■■ 4.1
MSH6-206ENST00000455383 DNAJC5BQ9UF47 199 aa40.42■■■■■ 4.06
MSH6-206ENST00000455383 NACADO15069 1562 aa40.37■■■■■ 4.05
MSH6-206ENST00000455383 DCAF8L2P0C7V8 631 aa39.96■■■■□ 3.99
MSH6-206ENST00000455383 MYO15BQ96JP2 1530 aa39.81■■■■□ 3.96
MSH6-206ENST00000455383 PABPN1Q86U42 306 aaKnown RBP eCLIP39.8■■■■□ 3.96
MSH6-206ENST00000455383 UNC13AQ9UPW8 1703 aa39.73■■■■□ 3.95
MSH6-206ENST00000455383 BICRAQ9NZM4 1560 aa39.54■■■■□ 3.92
MSH6-206ENST00000455383 ZCCHC6Q5VYS8 1495 aaKnown RBP39.24■■■■□ 3.87
MSH6-206ENST00000455383 DCAF1Q9Y4B6 1507 aa39.19■■■■□ 3.86
MSH6-206ENST00000455383 SHROOM4Q9ULL8 1493 aa39.01■■■■□ 3.84
MSH6-206ENST00000455383 SCRIBQ14160 1630 aa38.75■■■■□ 3.79
MSH6-206ENST00000455383 CC2D2AQ9P2K1 1620 aa38.67■■■■□ 3.78
MSH6-206ENST00000455383 CECR2Q9BXF3 1484 aa38.6■■■■□ 3.77
MSH6-206ENST00000455383 EIF4G1Q04637 1599 aaKnown RBP38.56■■■■□ 3.76
MSH6-206ENST00000455383 NCAPD3P42695 1498 aa37.3■■■■□ 3.56
MSH6-206ENST00000455383 DNAJC5Q9H3Z4 198 aa37.29■■■■□ 3.56
MSH6-206ENST00000455383 ATAD2BQ9ULI0 1458 aa37.13■■■■□ 3.53
MSH6-206ENST00000455383 CUX2O14529 1486 aa37.04■■■■□ 3.52
MSH6-206ENST00000455383 SMARCA4P51532 1647 aa37■■■■□ 3.51
MSH6-206ENST00000455383 SMARCA2P51531 1590 aa36.99■■■■□ 3.51
MSH6-206ENST00000455383 HMGXB3Q12766 1538 aa36.97■■■■□ 3.51
MSH6-206ENST00000455383 ERCC6Q03468 1493 aa36.94■■■■□ 3.5
MSH6-206ENST00000455383 BAZ1AQ9NRL2 1556 aaPredicted RBP36.78■■■■□ 3.48
MSH6-206ENST00000455383 NESP48681 1621 aa36.71■■■■□ 3.47
MSH6-206ENST00000455383 PEG3Q9GZU2 1588 aa36.7■■■■□ 3.47
MSH6-206ENST00000455383 BAZ1BQ9UIG0 1483 aaKnown RBP36.7■■■■□ 3.47
MSH6-206ENST00000455383 MROH2BQ7Z745 1585 aa36.51■■■■□ 3.44
MSH6-206ENST00000455383 LAMC3Q9Y6N6 1575 aa36.44■■■■□ 3.42
MSH6-206ENST00000455383 THOC2Q8NI27 1593 aaKnown RBP36.42■■■■□ 3.42
MSH6-206ENST00000455383 PDS5BQ9NTI5 1447 aa36.24■■■■□ 3.39
MSH6-206ENST00000455383 KIF21AQ7Z4S6 1674 aa36.21■■■■□ 3.39
MSH6-206ENST00000455383 CADPSQ9ULU8 1353 aa36.13■■■■□ 3.37
MSH6-206ENST00000455383 WIZO95785 1651 aa36.02■■■■□ 3.36
MSH6-206ENST00000455383 MRC2Q9UBG0 1479 aa35.94■■■■□ 3.34
MSH6-206ENST00000455383 WDR62O43379 1518 aa35.88■■■■□ 3.33
MSH6-206ENST00000455383 CEP164Q9UPV0 1460 aa35.73■■■■□ 3.31
MSH6-206ENST00000455383 CFTRP13569 1480 aa35.68■■■■□ 3.3
MSH6-206ENST00000455383 FANCD2Q9BXW9 1451 aa35.68■■■■□ 3.3
MSH6-206ENST00000455383 RSF1Q96T23 1441 aaPredicted RBP35.68■■■■□ 3.3
MSH6-206ENST00000455383 TOP2AP11388 1531 aaKnown RBP35.58■■■■□ 3.29
MSH6-206ENST00000455383 TRIM41Q8WV44 630 aa35.43■■■■□ 3.26
MSH6-206ENST00000455383 URB2Q14146 1524 aaKnown RBP35.42■■■■□ 3.26
MSH6-206ENST00000455383 OSCARQ8IYS5 282 aa35.28■■■■□ 3.24
MSH6-206ENST00000455383 PRDM2Q13029 1718 aa35.23■■■■□ 3.23
MSH6-206ENST00000455383 CCDC88BA6NC98 1476 aa35.19■■■■□ 3.22
MSH6-206ENST00000455383 IFT140Q96RY7 1462 aa35.06■■■■□ 3.2
MSH6-206ENST00000455383 ZNF608Q9ULD9 1512 aaPredicted RBP35.01■■■■□ 3.2
MSH6-206ENST00000455383 TOPBP1Q92547 1522 aa35■■■■□ 3.19
MSH6-206ENST00000455383 ABCC8Q09428 1581 aa34.92■■■■□ 3.18
MSH6-206ENST00000455383 DNMBPQ6XZF7 1577 aa34.84■■■■□ 3.17
MSH6-206ENST00000455383 RIMBP3CA6NJZ7 1639 aa34.84■■■■□ 3.17
MSH6-206ENST00000455383 RIMBP3BA6NNM3 1639 aa34.84■■■■□ 3.17
MSH6-206ENST00000455383 RIMBP3Q9UFD9 1639 aa34.84■■■■□ 3.17
MSH6-206ENST00000455383 EIF4G3O43432 1585 aaKnown RBP34.79■■■■□ 3.16
MSH6-206ENST00000455383 TARBP1Q13395 1621 aaKnown RBP34.72■■■■□ 3.15
MSH6-206ENST00000455383 ARHGEF11O15085 1522 aa34.71■■■■□ 3.15
MSH6-206ENST00000455383 AQRO60306 1485 aaKnown RBP eCLIP34.65■■■■□ 3.148e-7■■■□□ 19
MSH6-206ENST00000455383 POLA1P09884 1462 aaPredicted RBP34.63■■■■□ 3.13
MSH6-206ENST00000455383 CHD1O14646 1710 aa34.54■■■■□ 3.12
MSH6-206ENST00000455383 RAD54L2Q9Y4B4 1467 aa34.48■■■■□ 3.11
MSH6-206ENST00000455383 SOGA1O94964 1423 aa34.45■■■■□ 3.11
MSH6-206ENST00000455383 CYB5RLQ6IPT4 315 aa34.44■■■■□ 3.1
MSH6-206ENST00000455383 TDRD9Q8NDG6 1382 aaKnown RBP34.4■■■■□ 3.1
MSH6-206ENST00000455383 FBLN2P98095 1184 aa34.39■■■■□ 3.1
MSH6-206ENST00000455383 ARAP1Q96P48 1450 aa34.37■■■■□ 3.09
MSH6-206ENST00000455383 WDR97A6NE52 1622 aa34.37■■■■□ 3.09
MSH6-206ENST00000455383 FGD5Q6ZNL6 1462 aa34.36■■■■□ 3.09
MSH6-206ENST00000455383 CUX1P39880 1505 aa34.31■■■■□ 3.08
MSH6-206ENST00000455383 SNAPC4Q5SXM2 1469 aa34.29■■■■□ 3.08
MSH6-206ENST00000455383 MAGI1Q96QZ7 1491 aaPredicted RBP34.22■■■■□ 3.07
MSH6-206ENST00000455383 CLASP1Q7Z460 1538 aa34.22■■■■□ 3.07
MSH6-206ENST00000455383 GRIN2BQ13224 1484 aa34.19■■■■□ 3.06
MSH6-206ENST00000455383 CHMP7Q8WUX9 453 aaPredicted RBP34.15■■■■□ 3.06
MSH6-206ENST00000455383 SYNJ1O43426 1573 aa34.13■■■■□ 3.05
MSH6-206ENST00000455383 SYNJ2O15056 1496 aa34.11■■■■□ 3.05
MSH6-206ENST00000455383 TRHP20396 242 aaPredicted RBP34.07■■■■□ 3.04
MSH6-206ENST00000455383 GAPVD1Q14C86 1478 aa34.02■■■■□ 3.04
MSH6-206ENST00000455383 ABCA10Q8WWZ4 1543 aa33.99■■■■□ 3.03
MSH6-206ENST00000455383 PBRM1Q86U86 1689 aa33.99■■■■□ 3.03
MSH6-206ENST00000455383 ABCA5Q8WWZ7 1642 aa33.95■■■■□ 3.03
MSH6-206ENST00000455383 SUPT5HO00267 1087 aaKnown RBP33.81■■■■□ 3
MSH6-206ENST00000455383 WRNQ14191 1432 aaPredicted RBP eCLIP33.77■■■■□ 3
MSH6-206ENST00000455383 GRIN2AQ12879 1464 aa33.75■■■□□ 2.99
MSH6-206ENST00000455383 BIVM-ERCC5R4GMW8 1640 aa33.7■■■□□ 2.99
MSH6-206ENST00000455383 ADAMTS12P58397 1594 aa33.69■■■□□ 2.98
MSH6-206ENST00000455383 TOP2BQ02880 1626 aa33.69■■■□□ 2.98
MSH6-206ENST00000455383 NUP160Q12769 1436 aa33.69■■■□□ 2.98
MSH6-206ENST00000455383 ERCC6L2Q5T890 1561 aa33.64■■■□□ 2.98
MSH6-206ENST00000455383 CEP170Q5SW79 1584 aa33.63■■■□□ 2.97
MSH6-206ENST00000455383 FHAD1B1AJZ9 1412 aa33.61■■■□□ 2.97
MSH6-206ENST00000455383 ERICH3Q5RHP9 1530 aa33.55■■■□□ 2.96
MSH6-206ENST00000455383 SHROOM2Q13796 1616 aa33.54■■■□□ 2.96
MSH6-206ENST00000455383 PRG4Q92954 1404 aaPredicted RBP33.32■■■□□ 2.92
MSH6-206ENST00000455383 JPH4Q96JJ6 628 aa33.3■■■□□ 2.92
MSH6-206ENST00000455383 AEBP2Q6ZN18 517 aaPredicted RBP33.23■■■□□ 2.91
MSH6-206ENST00000455383 RUSC2Q8N2Y8 1516 aa33.23■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 149.9 ms