RNA–Protein interactions for RNA: ENST00000455111.1

GPC1-206, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 841 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-206ENST00000455111 NISCHQ9Y2I1 1504 aa40.61■■■■■ 4.09
GPC1-206ENST00000455111 CCDC180Q9P1Z9 1646 aa36.4■■■■□ 3.42
GPC1-206ENST00000455111 ABCC9O60706 1549 aa36.29■■■■□ 3.4
GPC1-206ENST00000455111 RB1CC1Q8TDY2 1594 aa34.53■■■■□ 3.12
GPC1-206ENST00000455111 NACADO15069 1562 aa34.32■■■■□ 3.08
GPC1-206ENST00000455111 DNAJC5BQ9UF47 199 aa34.06■■■■□ 3.04
GPC1-206ENST00000455111 DCAF8L2P0C7V8 631 aa34.01■■■■□ 3.03
GPC1-206ENST00000455111 UNC13AQ9UPW8 1703 aa34■■■■□ 3.03
GPC1-206ENST00000455111 MYO15BQ96JP2 1530 aa33.89■■■■□ 3.02
GPC1-206ENST00000455111 PABPN1Q86U42 306 aaKnown RBP eCLIP33.76■■■□□ 2.99
GPC1-206ENST00000455111 BICRAQ9NZM4 1560 aa33.72■■■□□ 2.99
GPC1-206ENST00000455111 ZCCHC6Q5VYS8 1495 aaKnown RBP33.69■■■□□ 2.98
GPC1-206ENST00000455111 DCAF1Q9Y4B6 1507 aa33.52■■■□□ 2.96
GPC1-206ENST00000455111 SCRIBQ14160 1630 aa33.2■■■□□ 2.9
GPC1-206ENST00000455111 SHROOM4Q9ULL8 1493 aa33.03■■■□□ 2.88
GPC1-206ENST00000455111 CC2D2AQ9P2K1 1620 aa32.83■■■□□ 2.85
GPC1-206ENST00000455111 EIF4G1Q04637 1599 aaKnown RBP32.77■■■□□ 2.84
GPC1-206ENST00000455111 CECR2Q9BXF3 1484 aa32.63■■■□□ 2.81
GPC1-206ENST00000455111 NCAPD3P42695 1498 aa31.7■■■□□ 2.66
GPC1-206ENST00000455111 SMARCA4P51532 1647 aa31.68■■■□□ 2.66
GPC1-206ENST00000455111 ATAD2BQ9ULI0 1458 aa31.65■■■□□ 2.66
GPC1-206ENST00000455111 HMGXB3Q12766 1538 aa31.49■■■□□ 2.63
GPC1-206ENST00000455111 SMARCA2P51531 1590 aa31.48■■■□□ 2.63
GPC1-206ENST00000455111 BAZ1AQ9NRL2 1556 aaPredicted RBP31.45■■■□□ 2.63
GPC1-206ENST00000455111 PEG3Q9GZU2 1588 aa31.38■■■□□ 2.61
GPC1-206ENST00000455111 MROH2BQ7Z745 1585 aa31.35■■■□□ 2.61
GPC1-206ENST00000455111 NESP48681 1621 aa31.28■■■□□ 2.6
GPC1-206ENST00000455111 BAZ1BQ9UIG0 1483 aaKnown RBP31.27■■■□□ 2.6
GPC1-206ENST00000455111 ERCC6Q03468 1493 aa31.18■■■□□ 2.58
GPC1-206ENST00000455111 CUX2O14529 1486 aa31.15■■■□□ 2.58
GPC1-206ENST00000455111 DNAJC5Q9H3Z4 198 aa31.03■■■□□ 2.56
GPC1-206ENST00000455111 WIZO95785 1651 aa31■■■□□ 2.55
GPC1-206ENST00000455111 THOC2Q8NI27 1593 aaKnown RBP30.96■■■□□ 2.55
GPC1-206ENST00000455111 LAMC3Q9Y6N6 1575 aa30.96■■■□□ 2.55
GPC1-206ENST00000455111 KIF21AQ7Z4S6 1674 aa30.91■■■□□ 2.54
GPC1-206ENST00000455111 CADPSQ9ULU8 1353 aa30.7■■■□□ 2.51
GPC1-206ENST00000455111 RSF1Q96T23 1441 aaPredicted RBP30.68■■■□□ 2.5
GPC1-206ENST00000455111 PDS5BQ9NTI5 1447 aa30.67■■■□□ 2.5
GPC1-206ENST00000455111 TOP2AP11388 1531 aaKnown RBP30.52■■■□□ 2.48
GPC1-206ENST00000455111 MRC2Q9UBG0 1479 aa30.5■■■□□ 2.47
GPC1-206ENST00000455111 WDR62O43379 1518 aa30.49■■■□□ 2.47
GPC1-206ENST00000455111 CFTRP13569 1480 aa30.43■■■□□ 2.46
GPC1-206ENST00000455111 FANCD2Q9BXW9 1451 aa30.38■■■□□ 2.45
GPC1-206ENST00000455111 CEP164Q9UPV0 1460 aa30.37■■■□□ 2.45
GPC1-206ENST00000455111 URB2Q14146 1524 aaKnown RBP30.22■■■□□ 2.43
GPC1-206ENST00000455111 PRDM2Q13029 1718 aa30.22■■■□□ 2.43
GPC1-206ENST00000455111 CCDC88BA6NC98 1476 aa30.19■■■□□ 2.42
GPC1-206ENST00000455111 TOPBP1Q92547 1522 aa29.86■■■□□ 2.37
GPC1-206ENST00000455111 ZNF608Q9ULD9 1512 aaPredicted RBP29.84■■■□□ 2.37
GPC1-206ENST00000455111 IFT140Q96RY7 1462 aa29.75■■■□□ 2.35
GPC1-206ENST00000455111 DNMBPQ6XZF7 1577 aa29.75■■■□□ 2.35
GPC1-206ENST00000455111 TARBP1Q13395 1621 aaKnown RBP29.67■■■□□ 2.34
GPC1-206ENST00000455111 EIF4G3O43432 1585 aaKnown RBP29.66■■■□□ 2.34
GPC1-206ENST00000455111 OSCARQ8IYS5 282 aa29.66■■■□□ 2.34
GPC1-206ENST00000455111 ABCC8Q09428 1581 aa29.65■■■□□ 2.34
GPC1-206ENST00000455111 TRIM41Q8WV44 630 aa29.65■■■□□ 2.34
GPC1-206ENST00000455111 POLA1P09884 1462 aaPredicted RBP29.56■■■□□ 2.32
GPC1-206ENST00000455111 AQRO60306 1485 aaKnown RBP eCLIP29.51■■■□□ 2.31
GPC1-206ENST00000455111 RAD54L2Q9Y4B4 1467 aa29.48■■■□□ 2.31
GPC1-206ENST00000455111 RIMBP3CA6NJZ7 1639 aa29.48■■■□□ 2.31
GPC1-206ENST00000455111 RIMBP3BA6NNM3 1639 aa29.48■■■□□ 2.31
GPC1-206ENST00000455111 RIMBP3Q9UFD9 1639 aa29.48■■■□□ 2.31
GPC1-206ENST00000455111 CHD1O14646 1710 aa29.47■■■□□ 2.31
GPC1-206ENST00000455111 CUX1P39880 1505 aa29.44■■■□□ 2.3
GPC1-206ENST00000455111 FGD5Q6ZNL6 1462 aa29.39■■■□□ 2.3
GPC1-206ENST00000455111 ARHGEF11O15085 1522 aa29.35■■■□□ 2.29
GPC1-206ENST00000455111 SOGA1O94964 1423 aa29.34■■■□□ 2.29
GPC1-206ENST00000455111 TDRD9Q8NDG6 1382 aaKnown RBP29.31■■■□□ 2.28
GPC1-206ENST00000455111 WDR97A6NE52 1622 aa29.31■■■□□ 2.28
GPC1-206ENST00000455111 SUPT5HO00267 1087 aaKnown RBP29.24■■■□□ 2.27
GPC1-206ENST00000455111 SNAPC4Q5SXM2 1469 aa29.21■■■□□ 2.27
GPC1-206ENST00000455111 PBRM1Q86U86 1689 aa29.12■■■□□ 2.25
GPC1-206ENST00000455111 FBLN2P98095 1184 aa29.12■■■□□ 2.25
GPC1-206ENST00000455111 CLASP1Q7Z460 1538 aa29.11■■■□□ 2.25
GPC1-206ENST00000455111 ARAP1Q96P48 1450 aa29.1■■■□□ 2.25
GPC1-206ENST00000455111 GRIN2BQ13224 1484 aa29.08■■■□□ 2.25
GPC1-206ENST00000455111 ABCA5Q8WWZ7 1642 aa29.07■■■□□ 2.24
GPC1-206ENST00000455111 MAGI1Q96QZ7 1491 aaPredicted RBP29.07■■■□□ 2.24
GPC1-206ENST00000455111 ABCA10Q8WWZ4 1543 aa29.04■■■□□ 2.24
GPC1-206ENST00000455111 GAPVD1Q14C86 1478 aa29.01■■■□□ 2.23
GPC1-206ENST00000455111 CYB5RLQ6IPT4 315 aa29■■■□□ 2.23
GPC1-206ENST00000455111 BIVM-ERCC5R4GMW8 1640 aa29■■■□□ 2.23
GPC1-206ENST00000455111 SYNJ2O15056 1496 aa28.99■■■□□ 2.23
GPC1-206ENST00000455111 SYNJ1O43426 1573 aa28.99■■■□□ 2.23
GPC1-206ENST00000455111 TOP2BQ02880 1626 aa28.95■■■□□ 2.23
GPC1-206ENST00000455111 CHMP7Q8WUX9 453 aaPredicted RBP28.92■■■□□ 2.22
GPC1-206ENST00000455111 WRNQ14191 1432 aaPredicted RBP eCLIP28.86■■■□□ 2.21
GPC1-206ENST00000455111 ADAMTS12P58397 1594 aa28.82■■■□□ 2.2
GPC1-206ENST00000455111 GRIN2AQ12879 1464 aa28.75■■■□□ 2.19
GPC1-206ENST00000455111 CEP170Q5SW79 1584 aa28.74■■■□□ 2.19
GPC1-206ENST00000455111 ERCC6L2Q5T890 1561 aa28.74■■■□□ 2.19
GPC1-206ENST00000455111 NUP160Q12769 1436 aa28.69■■■□□ 2.18
GPC1-206ENST00000455111 ERICH3Q5RHP9 1530 aa28.65■■■□□ 2.18
GPC1-206ENST00000455111 FHAD1B1AJZ9 1412 aa28.62■■■□□ 2.17
GPC1-206ENST00000455111 SHROOM2Q13796 1616 aa28.61■■■□□ 2.17
GPC1-206ENST00000455111 TRHP20396 242 aaPredicted RBP28.56■■■□□ 2.16
GPC1-206ENST00000455111 RUSC2Q8N2Y8 1516 aa28.43■■■□□ 2.14
GPC1-206ENST00000455111 PRG4Q92954 1404 aaPredicted RBP28.33■■■□□ 2.13
GPC1-206ENST00000455111 IGF1RP08069 1367 aa28.32■■■□□ 2.12
GPC1-206ENST00000455111 JPH4Q96JJ6 628 aa28.28■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms