RNA–Protein interactions for RNA: ENST00000455069.1

HDAC9-217, Transcript of histone deacetylase 9, humanhuman

TSL 4

Gene HDAC9, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-217ENST00000455069 NISCHQ9Y2I1 1504 aa27.79■■■□□ 2.04
HDAC9-217ENST00000455069 CCDC180Q9P1Z9 1646 aa24.77■■□□□ 1.56
HDAC9-217ENST00000455069 ABCC9O60706 1549 aa24.25■■□□□ 1.47
HDAC9-217ENST00000455069 RB1CC1Q8TDY2 1594 aa23.27■■□□□ 1.32
HDAC9-217ENST00000455069 NACADO15069 1562 aa23.23■■□□□ 1.31
HDAC9-217ENST00000455069 ZCCHC6Q5VYS8 1495 aaKnown RBP23.17■■□□□ 1.3
HDAC9-217ENST00000455069 MYO15BQ96JP2 1530 aa23.08■■□□□ 1.29
HDAC9-217ENST00000455069 DCAF8L2P0C7V8 631 aa23.08■■□□□ 1.29
HDAC9-217ENST00000455069 DCAF1Q9Y4B6 1507 aa22.98■■□□□ 1.27
HDAC9-217ENST00000455069 UNC13AQ9UPW8 1703 aa22.9■■□□□ 1.26
HDAC9-217ENST00000455069 DNAJC5BQ9UF47 199 aa22.75■■□□□ 1.23
HDAC9-217ENST00000455069 AEBP2Q6ZN18 517 aaPredicted RBP22.71■■□□□ 1.23
HDAC9-217ENST00000455069 BICRAQ9NZM4 1560 aa22.65■■□□□ 1.22
HDAC9-217ENST00000455069 SCRIBQ14160 1630 aa22.59■■□□□ 1.21
HDAC9-217ENST00000455069 PABPN1Q86U42 306 aaKnown RBP eCLIP22.57■■□□□ 1.2
HDAC9-217ENST00000455069 SHROOM4Q9ULL8 1493 aa22.32■■□□□ 1.16
HDAC9-217ENST00000455069 EIF4G1Q04637 1599 aaKnown RBP22.01■■□□□ 1.11
HDAC9-217ENST00000455069 CC2D2AQ9P2K1 1620 aa21.94■■□□□ 1.1
HDAC9-217ENST00000455069 CECR2Q9BXF3 1484 aa21.85■■□□□ 1.09
HDAC9-217ENST00000455069 CHIC1Q5VXU3 224 aa21.84■■□□□ 1.09
HDAC9-217ENST00000455069 SMARCA4P51532 1647 aa21.61■■□□□ 1.05
HDAC9-217ENST00000455069 BAZ1AQ9NRL2 1556 aaPredicted RBP21.53■■□□□ 1.04
HDAC9-217ENST00000455069 ATAD2BQ9ULI0 1458 aa21.45■■□□□ 1.03
HDAC9-217ENST00000455069 MROH2BQ7Z745 1585 aa21.44■■□□□ 1.02
HDAC9-217ENST00000455069 NCAPD3P42695 1498 aa21.42■■□□□ 1.02
HDAC9-217ENST00000455069 SMARCA2P51531 1590 aa21.41■■□□□ 1.02
HDAC9-217ENST00000455069 PEG3Q9GZU2 1588 aa21.4■■□□□ 1.02
HDAC9-217ENST00000455069 HMGXB3Q12766 1538 aa21.36■■□□□ 1.01
HDAC9-217ENST00000455069 BAZ1BQ9UIG0 1483 aaKnown RBP21.26■□□□□ 0.99
HDAC9-217ENST00000455069 WIZO95785 1651 aa21.24■□□□□ 0.99
HDAC9-217ENST00000455069 RSF1Q96T23 1441 aaPredicted RBP21.14■□□□□ 0.98
HDAC9-217ENST00000455069 NESP48681 1621 aa20.97■□□□□ 0.95
HDAC9-217ENST00000455069 TOP2AP11388 1531 aaKnown RBP20.97■□□□□ 0.95
HDAC9-217ENST00000455069 ERCC6Q03468 1493 aa20.92■□□□□ 0.94
HDAC9-217ENST00000455069 CUX2O14529 1486 aa20.91■□□□□ 0.94
HDAC9-217ENST00000455069 LAMC3Q9Y6N6 1575 aa20.89■□□□□ 0.94
HDAC9-217ENST00000455069 DNAJC5Q9H3Z4 198 aa20.87■□□□□ 0.93
HDAC9-217ENST00000455069 KIF21AQ7Z4S6 1674 aa20.78■□□□□ 0.92
HDAC9-217ENST00000455069 CADPSQ9ULU8 1353 aa20.77■□□□□ 0.92
HDAC9-217ENST00000455069 THOC2Q8NI27 1593 aaKnown RBP20.72■□□□□ 0.91
HDAC9-217ENST00000455069 CCDC88BA6NC98 1476 aa20.69■□□□□ 0.9
HDAC9-217ENST00000455069 CFTRP13569 1480 aa20.69■□□□□ 0.9
HDAC9-217ENST00000455069 PDS5BQ9NTI5 1447 aa20.68■□□□□ 0.9
HDAC9-217ENST00000455069 PRDM2Q13029 1718 aa20.64■□□□□ 0.9
HDAC9-217ENST00000455069 FANCD2Q9BXW9 1451 aa20.56■□□□□ 0.88
HDAC9-217ENST00000455069 CEP164Q9UPV0 1460 aa20.54■□□□□ 0.88
HDAC9-217ENST00000455069 MRC2Q9UBG0 1479 aa20.52■□□□□ 0.88
HDAC9-217ENST00000455069 WDR62O43379 1518 aa20.5■□□□□ 0.87
HDAC9-217ENST00000455069 SUPT5HO00267 1087 aaKnown RBP20.49■□□□□ 0.87
HDAC9-217ENST00000455069 URB2Q14146 1524 aaKnown RBP20.4■□□□□ 0.86
HDAC9-217ENST00000455069 TOPBP1Q92547 1522 aa20.26■□□□□ 0.83
HDAC9-217ENST00000455069 DNMBPQ6XZF7 1577 aa20.24■□□□□ 0.83
HDAC9-217ENST00000455069 ABCC8Q09428 1581 aa20.17■□□□□ 0.82
HDAC9-217ENST00000455069 CUX1P39880 1505 aa20.12■□□□□ 0.81
HDAC9-217ENST00000455069 IFT140Q96RY7 1462 aa20.1■□□□□ 0.81
HDAC9-217ENST00000455069 POLA1P09884 1462 aaPredicted RBP20.09■□□□□ 0.81
HDAC9-217ENST00000455069 TARBP1Q13395 1621 aaKnown RBP20.09■□□□□ 0.81
HDAC9-217ENST00000455069 ZNF608Q9ULD9 1512 aaPredicted RBP20.07■□□□□ 0.8
HDAC9-217ENST00000455069 FGD5Q6ZNL6 1462 aa20.03■□□□□ 0.8
HDAC9-217ENST00000455069 EIF4G3O43432 1585 aaKnown RBP20.02■□□□□ 0.8
HDAC9-217ENST00000455069 RAD54L2Q9Y4B4 1467 aa19.99■□□□□ 0.79
HDAC9-217ENST00000455069 WDR97A6NE52 1622 aa19.97■□□□□ 0.79
HDAC9-217ENST00000455069 BIVM-ERCC5R4GMW8 1640 aa19.96■□□□□ 0.79
HDAC9-217ENST00000455069 SYNJ1O43426 1573 aa19.95■□□□□ 0.78
HDAC9-217ENST00000455069 OSCARQ8IYS5 282 aa19.94■□□□□ 0.78
HDAC9-217ENST00000455069 TOP2BQ02880 1626 aa19.94■□□□□ 0.78
HDAC9-217ENST00000455069 SOGA1O94964 1423 aa19.93■□□□□ 0.78
HDAC9-217ENST00000455069 TRIM41Q8WV44 630 aa19.91■□□□□ 0.78
HDAC9-217ENST00000455069 WRNQ14191 1432 aaPredicted RBP eCLIP19.91■□□□□ 0.78
HDAC9-217ENST00000455069 AQRO60306 1485 aaKnown RBP eCLIP19.91■□□□□ 0.78
HDAC9-217ENST00000455069 TDRD9Q8NDG6 1382 aaKnown RBP19.84■□□□□ 0.77
HDAC9-217ENST00000455069 ABCA10Q8WWZ4 1543 aa19.83■□□□□ 0.77
HDAC9-217ENST00000455069 ABCA5Q8WWZ7 1642 aa19.82■□□□□ 0.76
HDAC9-217ENST00000455069 CHD1O14646 1710 aa19.8■□□□□ 0.76
HDAC9-217ENST00000455069 PBRM1Q86U86 1689 aa19.8■□□□□ 0.76
HDAC9-217ENST00000455069 SNAPC4Q5SXM2 1469 aa19.74■□□□□ 0.75
HDAC9-217ENST00000455069 GAPVD1Q14C86 1478 aa19.73■□□□□ 0.75
HDAC9-217ENST00000455069 GRIN2BQ13224 1484 aa19.73■□□□□ 0.75
HDAC9-217ENST00000455069 RIMBP3CA6NJZ7 1639 aa19.69■□□□□ 0.74
HDAC9-217ENST00000455069 RIMBP3BA6NNM3 1639 aa19.69■□□□□ 0.74
HDAC9-217ENST00000455069 RIMBP3Q9UFD9 1639 aa19.69■□□□□ 0.74
HDAC9-217ENST00000455069 MAGI1Q96QZ7 1491 aaPredicted RBP19.69■□□□□ 0.74
HDAC9-217ENST00000455069 ARHGEF11O15085 1522 aa19.64■□□□□ 0.73
HDAC9-217ENST00000455069 ADAMTS12P58397 1594 aa19.61■□□□□ 0.73
HDAC9-217ENST00000455069 SYNJ2O15056 1496 aa19.61■□□□□ 0.73
HDAC9-217ENST00000455069 ERICH3Q5RHP9 1530 aa19.58■□□□□ 0.73
HDAC9-217ENST00000455069 FBLN2P98095 1184 aa19.58■□□□□ 0.72
HDAC9-217ENST00000455069 CLASP1Q7Z460 1538 aa19.55■□□□□ 0.72
HDAC9-217ENST00000455069 CHMP7Q8WUX9 453 aaPredicted RBP19.51■□□□□ 0.71
HDAC9-217ENST00000455069 GRIN2AQ12879 1464 aa19.51■□□□□ 0.71
HDAC9-217ENST00000455069 FHAD1B1AJZ9 1412 aa19.49■□□□□ 0.71
HDAC9-217ENST00000455069 KIF27Q86VH2 1401 aa19.47■□□□□ 0.71
HDAC9-217ENST00000455069 CEP170Q5SW79 1584 aa19.46■□□□□ 0.71
HDAC9-217ENST00000455069 CYB5RLQ6IPT4 315 aa19.46■□□□□ 0.71
HDAC9-217ENST00000455069 ARAP1Q96P48 1450 aa19.45■□□□□ 0.7
HDAC9-217ENST00000455069 CUL7Q14999 1698 aa19.43■□□□□ 0.7
HDAC9-217ENST00000455069 NUP160Q12769 1436 aa19.42■□□□□ 0.7
HDAC9-217ENST00000455069 SENP3Q9H4L4 574 aaPredicted RBP19.42■□□□□ 0.7
HDAC9-217ENST00000455069 IGF1RP08069 1367 aa19.41■□□□□ 0.7
HDAC9-217ENST00000455069 RUSC2Q8N2Y8 1516 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms