RNA–Protein interactions for RNA: ENST00000454850.1

CLCN4-204, Transcript of chloride voltage-gated channel 4, humanhuman

TSL 3

Gene CLCN4, Length 487 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN4-204ENST00000454850 NISCHQ9Y2I1 1504 aa25.27■■□□□ 1.64
CLCN4-204ENST00000454850 ABCC9O60706 1549 aa23.17■■□□□ 1.3
CLCN4-204ENST00000454850 CCDC180Q9P1Z9 1646 aa22.86■■□□□ 1.25
CLCN4-204ENST00000454850 DNAJC5BQ9UF47 199 aa21.94■■□□□ 1.1
CLCN4-204ENST00000454850 RB1CC1Q8TDY2 1594 aa21.9■■□□□ 1.1
CLCN4-204ENST00000454850 NACADO15069 1562 aa21.63■■□□□ 1.05
CLCN4-204ENST00000454850 UNC13AQ9UPW8 1703 aa21.52■■□□□ 1.04
CLCN4-204ENST00000454850 DCAF8L2P0C7V8 631 aa21.51■■□□□ 1.03
CLCN4-204ENST00000454850 PABPN1Q86U42 306 aaKnown RBP eCLIP21.49■■□□□ 1.03
CLCN4-204ENST00000454850 BICRAQ9NZM4 1560 aa21.27■■□□□ 1
CLCN4-204ENST00000454850 MYO15BQ96JP2 1530 aa21.17■□□□□ 0.98
CLCN4-204ENST00000454850 CC2D2AQ9P2K1 1620 aa20.92■□□□□ 0.94
CLCN4-204ENST00000454850 ZCCHC6Q5VYS8 1495 aaKnown RBP20.88■□□□□ 0.93
CLCN4-204ENST00000454850 SHROOM4Q9ULL8 1493 aa20.88■□□□□ 0.93
CLCN4-204ENST00000454850 SCRIBQ14160 1630 aa20.87■□□□□ 0.93
CLCN4-204ENST00000454850 CECR2Q9BXF3 1484 aa20.87■□□□□ 0.93
CLCN4-204ENST00000454850 DCAF1Q9Y4B6 1507 aa20.81■□□□□ 0.92
CLCN4-204ENST00000454850 EIF4G1Q04637 1599 aaKnown RBP20.78■□□□□ 0.92
CLCN4-204ENST00000454850 DNAJC5Q9H3Z4 198 aa20.34■□□□□ 0.85
CLCN4-204ENST00000454850 CUX2O14529 1486 aa20.04■□□□□ 0.8
CLCN4-204ENST00000454850 ERCC6Q03468 1493 aa20.03■□□□□ 0.8
CLCN4-204ENST00000454850 NCAPD3P42695 1498 aa19.93■□□□□ 0.78
CLCN4-204ENST00000454850 ATAD2BQ9ULI0 1458 aa19.86■□□□□ 0.77
CLCN4-204ENST00000454850 SMARCA4P51532 1647 aa19.83■□□□□ 0.76
CLCN4-204ENST00000454850 NESP48681 1621 aa19.82■□□□□ 0.76
CLCN4-204ENST00000454850 SMARCA2P51531 1590 aa19.82■□□□□ 0.76
CLCN4-204ENST00000454850 HMGXB3Q12766 1538 aa19.81■□□□□ 0.76
CLCN4-204ENST00000454850 BAZ1BQ9UIG0 1483 aaKnown RBP19.69■□□□□ 0.74
CLCN4-204ENST00000454850 THOC2Q8NI27 1593 aaKnown RBP19.69■□□□□ 0.74
CLCN4-204ENST00000454850 BAZ1AQ9NRL2 1556 aaPredicted RBP19.65■□□□□ 0.74
CLCN4-204ENST00000454850 KIF21AQ7Z4S6 1674 aa19.62■□□□□ 0.73
CLCN4-204ENST00000454850 LAMC3Q9Y6N6 1575 aa19.6■□□□□ 0.73
CLCN4-204ENST00000454850 PEG3Q9GZU2 1588 aa19.57■□□□□ 0.72
CLCN4-204ENST00000454850 MROH2BQ7Z745 1585 aa19.5■□□□□ 0.71
CLCN4-204ENST00000454850 PDS5BQ9NTI5 1447 aa19.46■□□□□ 0.71
CLCN4-204ENST00000454850 TRIM41Q8WV44 630 aa19.42■□□□□ 0.7
CLCN4-204ENST00000454850 MRC2Q9UBG0 1479 aa19.35■□□□□ 0.69
CLCN4-204ENST00000454850 CADPSQ9ULU8 1353 aa19.32■□□□□ 0.68
CLCN4-204ENST00000454850 WDR62O43379 1518 aa19.3■□□□□ 0.68
CLCN4-204ENST00000454850 WIZO95785 1651 aa19.3■□□□□ 0.68
CLCN4-204ENST00000454850 CEP164Q9UPV0 1460 aa19.22■□□□□ 0.67
CLCN4-204ENST00000454850 FANCD2Q9BXW9 1451 aa19.16■□□□□ 0.66
CLCN4-204ENST00000454850 CFTRP13569 1480 aa19.05■□□□□ 0.64
CLCN4-204ENST00000454850 OSCARQ8IYS5 282 aa19.04■□□□□ 0.64
CLCN4-204ENST00000454850 URB2Q14146 1524 aaKnown RBP19.03■□□□□ 0.64
CLCN4-204ENST00000454850 PRDM2Q13029 1718 aa19■□□□□ 0.63
CLCN4-204ENST00000454850 TOP2AP11388 1531 aaKnown RBP18.99■□□□□ 0.63
CLCN4-204ENST00000454850 RSF1Q96T23 1441 aaPredicted RBP18.94■□□□□ 0.62
CLCN4-204ENST00000454850 RIMBP3CA6NJZ7 1639 aa18.94■□□□□ 0.62
CLCN4-204ENST00000454850 RIMBP3BA6NNM3 1639 aa18.94■□□□□ 0.62
CLCN4-204ENST00000454850 RIMBP3Q9UFD9 1639 aa18.94■□□□□ 0.62
CLCN4-204ENST00000454850 ZNF608Q9ULD9 1512 aaPredicted RBP18.85■□□□□ 0.61
CLCN4-204ENST00000454850 IFT140Q96RY7 1462 aa18.82■□□□□ 0.6
CLCN4-204ENST00000454850 ARHGEF11O15085 1522 aa18.8■□□□□ 0.6
CLCN4-204ENST00000454850 EIF4G3O43432 1585 aaKnown RBP18.77■□□□□ 0.6
CLCN4-204ENST00000454850 TOPBP1Q92547 1522 aa18.76■□□□□ 0.59
CLCN4-204ENST00000454850 CHD1O14646 1710 aa18.75■□□□□ 0.59
CLCN4-204ENST00000454850 CCDC88BA6NC98 1476 aa18.75■□□□□ 0.59
CLCN4-204ENST00000454850 DNMBPQ6XZF7 1577 aa18.68■□□□□ 0.58
CLCN4-204ENST00000454850 CYB5RLQ6IPT4 315 aa18.66■□□□□ 0.58
CLCN4-204ENST00000454850 ABCC8Q09428 1581 aa18.65■□□□□ 0.58
CLCN4-204ENST00000454850 TARBP1Q13395 1621 aaKnown RBP18.64■□□□□ 0.57
CLCN4-204ENST00000454850 AQRO60306 1485 aaKnown RBP eCLIP18.63■□□□□ 0.57
CLCN4-204ENST00000454850 ARAP1Q96P48 1450 aa18.6■□□□□ 0.57
CLCN4-204ENST00000454850 FBLN2P98095 1184 aa18.6■□□□□ 0.57
CLCN4-204ENST00000454850 TRHP20396 242 aaPredicted RBP18.59■□□□□ 0.57
CLCN4-204ENST00000454850 POLA1P09884 1462 aaPredicted RBP18.55■□□□□ 0.56
CLCN4-204ENST00000454850 RAD54L2Q9Y4B4 1467 aa18.5■□□□□ 0.55
CLCN4-204ENST00000454850 TDRD9Q8NDG6 1382 aaKnown RBP18.46■□□□□ 0.55
CLCN4-204ENST00000454850 SNAPC4Q5SXM2 1469 aa18.46■□□□□ 0.54
CLCN4-204ENST00000454850 SOGA1O94964 1423 aa18.43■□□□□ 0.54
CLCN4-204ENST00000454850 CLASP1Q7Z460 1538 aa18.43■□□□□ 0.54
CLCN4-204ENST00000454850 FGD5Q6ZNL6 1462 aa18.4■□□□□ 0.54
CLCN4-204ENST00000454850 SYNJ1O43426 1573 aa18.4■□□□□ 0.54
CLCN4-204ENST00000454850 WDR97A6NE52 1622 aa18.39■□□□□ 0.53
CLCN4-204ENST00000454850 CHMP7Q8WUX9 453 aaPredicted RBP18.36■□□□□ 0.53
CLCN4-204ENST00000454850 MAGI1Q96QZ7 1491 aaPredicted RBP18.35■□□□□ 0.53
CLCN4-204ENST00000454850 PBRM1Q86U86 1689 aa18.34■□□□□ 0.53
CLCN4-204ENST00000454850 CUX1P39880 1505 aa18.34■□□□□ 0.53
CLCN4-204ENST00000454850 GRIN2BQ13224 1484 aa18.32■□□□□ 0.52
CLCN4-204ENST00000454850 SYNJ2O15056 1496 aa18.3■□□□□ 0.52
CLCN4-204ENST00000454850 AEBP2Q6ZN18 517 aaPredicted RBP18.27■□□□□ 0.52
CLCN4-204ENST00000454850 GAPVD1Q14C86 1478 aa18.24■□□□□ 0.51
CLCN4-204ENST00000454850 ABCA5Q8WWZ7 1642 aa18.2■□□□□ 0.5
CLCN4-204ENST00000454850 ERCC6L2Q5T890 1561 aa18.16■□□□□ 0.5
CLCN4-204ENST00000454850 ABCA10Q8WWZ4 1543 aa18.14■□□□□ 0.49
CLCN4-204ENST00000454850 GRIN2AQ12879 1464 aa18.1■□□□□ 0.49
CLCN4-204ENST00000454850 ADAMTS12P58397 1594 aa18.09■□□□□ 0.49
CLCN4-204ENST00000454850 CEP170Q5SW79 1584 aa18.08■□□□□ 0.49
CLCN4-204ENST00000454850 KIF13AQ9H1H9 1805 aa18.04■□□□□ 0.48
CLCN4-204ENST00000454850 SHROOM2Q13796 1616 aa18.02■□□□□ 0.48
CLCN4-204ENST00000454850 NUP160Q12769 1436 aa18.01■□□□□ 0.47
CLCN4-204ENST00000454850 WRNQ14191 1432 aaPredicted RBP eCLIP18■□□□□ 0.47
CLCN4-204ENST00000454850 BIVM-ERCC5R4GMW8 1640 aa17.99■□□□□ 0.47
CLCN4-204ENST00000454850 TOP2BQ02880 1626 aa17.97■□□□□ 0.47
CLCN4-204ENST00000454850 FHAD1B1AJZ9 1412 aa17.96■□□□□ 0.47
CLCN4-204ENST00000454850 SUPT5HO00267 1087 aaKnown RBP17.93■□□□□ 0.46
CLCN4-204ENST00000454850 ERICH3Q5RHP9 1530 aa17.92■□□□□ 0.46
CLCN4-204ENST00000454850 PRG4Q92954 1404 aaPredicted RBP17.89■□□□□ 0.46
CLCN4-204ENST00000454850 RUSC2Q8N2Y8 1516 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms