RNA–Protein interactions for RNA: ENST00000454608.3

USP41-202, Transcript of ubiquitin specific peptidase 41, humanhuman

APPRIS P5 TSL 5 BASIC

Gene USP41, Length 1,077 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP41-202ENST00000454608 NISCHQ9Y2I1 1504 aa26.75■■□□□ 1.87
USP41-202ENST00000454608 ABCC9O60706 1549 aa24.58■■□□□ 1.53
USP41-202ENST00000454608 CCDC180Q9P1Z9 1646 aa24.28■■□□□ 1.48
USP41-202ENST00000454608 DNAJC5BQ9UF47 199 aa23.41■■□□□ 1.34
USP41-202ENST00000454608 RB1CC1Q8TDY2 1594 aa23.3■■□□□ 1.32
USP41-202ENST00000454608 NACADO15069 1562 aa23.04■■□□□ 1.28
USP41-202ENST00000454608 UNC13AQ9UPW8 1703 aa22.79■■□□□ 1.24
USP41-202ENST00000454608 PABPN1Q86U42 306 aaKnown RBP eCLIP22.77■■□□□ 1.24
USP41-202ENST00000454608 DCAF8L2P0C7V8 631 aa22.69■■□□□ 1.22
USP41-202ENST00000454608 MYO15BQ96JP2 1530 aa22.6■■□□□ 1.21
USP41-202ENST00000454608 BICRAQ9NZM4 1560 aa22.59■■□□□ 1.21
USP41-202ENST00000454608 SHROOM4Q9ULL8 1493 aa22.34■■□□□ 1.17
USP41-202ENST00000454608 CC2D2AQ9P2K1 1620 aa22.24■■□□□ 1.15
USP41-202ENST00000454608 CECR2Q9BXF3 1484 aa22.22■■□□□ 1.15
USP41-202ENST00000454608 DCAF1Q9Y4B6 1507 aa22.13■■□□□ 1.13
USP41-202ENST00000454608 EIF4G1Q04637 1599 aaKnown RBP22.08■■□□□ 1.13
USP41-202ENST00000454608 ZCCHC6Q5VYS8 1495 aaKnown RBP22.08■■□□□ 1.12
USP41-202ENST00000454608 SCRIBQ14160 1630 aa21.99■■□□□ 1.11
USP41-202ENST00000454608 DNAJC5Q9H3Z4 198 aa21.9■■□□□ 1.1
USP41-202ENST00000454608 CUX2O14529 1486 aa21.45■■□□□ 1.03
USP41-202ENST00000454608 ERCC6Q03468 1493 aa21.3■■□□□ 1
USP41-202ENST00000454608 NCAPD3P42695 1498 aa21.24■□□□□ 0.99
USP41-202ENST00000454608 ATAD2BQ9ULI0 1458 aa21.09■□□□□ 0.97
USP41-202ENST00000454608 HMGXB3Q12766 1538 aa21.07■□□□□ 0.96
USP41-202ENST00000454608 SMARCA2P51531 1590 aa21.06■□□□□ 0.96
USP41-202ENST00000454608 NESP48681 1621 aa20.98■□□□□ 0.95
USP41-202ENST00000454608 SMARCA4P51532 1647 aa20.98■□□□□ 0.95
USP41-202ENST00000454608 THOC2Q8NI27 1593 aaKnown RBP20.93■□□□□ 0.94
USP41-202ENST00000454608 LAMC3Q9Y6N6 1575 aa20.87■□□□□ 0.93
USP41-202ENST00000454608 BAZ1BQ9UIG0 1483 aaKnown RBP20.87■□□□□ 0.93
USP41-202ENST00000454608 BAZ1AQ9NRL2 1556 aaPredicted RBP20.83■□□□□ 0.92
USP41-202ENST00000454608 PEG3Q9GZU2 1588 aa20.81■□□□□ 0.92
USP41-202ENST00000454608 KIF21AQ7Z4S6 1674 aa20.77■□□□□ 0.92
USP41-202ENST00000454608 PDS5BQ9NTI5 1447 aa20.74■□□□□ 0.91
USP41-202ENST00000454608 TRIM41Q8WV44 630 aa20.69■□□□□ 0.9
USP41-202ENST00000454608 MROH2BQ7Z745 1585 aa20.57■□□□□ 0.88
USP41-202ENST00000454608 MRC2Q9UBG0 1479 aa20.56■□□□□ 0.88
USP41-202ENST00000454608 CADPSQ9ULU8 1353 aa20.56■□□□□ 0.88
USP41-202ENST00000454608 WDR62O43379 1518 aa20.54■□□□□ 0.88
USP41-202ENST00000454608 CEP164Q9UPV0 1460 aa20.4■□□□□ 0.86
USP41-202ENST00000454608 OSCARQ8IYS5 282 aa20.36■□□□□ 0.85
USP41-202ENST00000454608 WIZO95785 1651 aa20.33■□□□□ 0.85
USP41-202ENST00000454608 FANCD2Q9BXW9 1451 aa20.31■□□□□ 0.84
USP41-202ENST00000454608 CFTRP13569 1480 aa20.24■□□□□ 0.83
USP41-202ENST00000454608 URB2Q14146 1524 aaKnown RBP20.17■□□□□ 0.82
USP41-202ENST00000454608 RIMBP3CA6NJZ7 1639 aa20.16■□□□□ 0.82
USP41-202ENST00000454608 RIMBP3BA6NNM3 1639 aa20.16■□□□□ 0.82
USP41-202ENST00000454608 RIMBP3Q9UFD9 1639 aa20.16■□□□□ 0.82
USP41-202ENST00000454608 PRDM2Q13029 1718 aa20.1■□□□□ 0.81
USP41-202ENST00000454608 TOP2AP11388 1531 aaKnown RBP20.06■□□□□ 0.8
USP41-202ENST00000454608 ARHGEF11O15085 1522 aa20.03■□□□□ 0.8
USP41-202ENST00000454608 IFT140Q96RY7 1462 aa20.02■□□□□ 0.8
USP41-202ENST00000454608 RSF1Q96T23 1441 aaPredicted RBP19.98■□□□□ 0.79
USP41-202ENST00000454608 ZNF608Q9ULD9 1512 aaPredicted RBP19.97■□□□□ 0.79
USP41-202ENST00000454608 EIF4G3O43432 1585 aaKnown RBP19.89■□□□□ 0.77
USP41-202ENST00000454608 TOPBP1Q92547 1522 aa19.89■□□□□ 0.77
USP41-202ENST00000454608 ABCC8Q09428 1581 aa19.88■□□□□ 0.77
USP41-202ENST00000454608 CYB5RLQ6IPT4 315 aa19.87■□□□□ 0.77
USP41-202ENST00000454608 CHD1O14646 1710 aa19.85■□□□□ 0.77
USP41-202ENST00000454608 TRHP20396 242 aaPredicted RBP19.81■□□□□ 0.76
USP41-202ENST00000454608 CCDC88BA6NC98 1476 aa19.8■□□□□ 0.76
USP41-202ENST00000454608 DNMBPQ6XZF7 1577 aa19.8■□□□□ 0.76
USP41-202ENST00000454608 ARAP1Q96P48 1450 aa19.79■□□□□ 0.76
USP41-202ENST00000454608 TARBP1Q13395 1621 aaKnown RBP19.76■□□□□ 0.75
USP41-202ENST00000454608 AQRO60306 1485 aaKnown RBP eCLIP19.73■□□□□ 0.75
USP41-202ENST00000454608 FBLN2P98095 1184 aa19.69■□□□□ 0.74
USP41-202ENST00000454608 POLA1P09884 1462 aaPredicted RBP19.65■□□□□ 0.74
USP41-202ENST00000454608 WDR97A6NE52 1622 aa19.62■□□□□ 0.73
USP41-202ENST00000454608 AEBP2Q6ZN18 517 aaPredicted RBP19.59■□□□□ 0.73
USP41-202ENST00000454608 CLASP1Q7Z460 1538 aa19.59■□□□□ 0.73
USP41-202ENST00000454608 SYNJ1O43426 1573 aa19.57■□□□□ 0.72
USP41-202ENST00000454608 SOGA1O94964 1423 aa19.55■□□□□ 0.72
USP41-202ENST00000454608 RAD54L2Q9Y4B4 1467 aa19.54■□□□□ 0.72
USP41-202ENST00000454608 TDRD9Q8NDG6 1382 aaKnown RBP19.54■□□□□ 0.72
USP41-202ENST00000454608 SNAPC4Q5SXM2 1469 aa19.54■□□□□ 0.72
USP41-202ENST00000454608 MAGI1Q96QZ7 1491 aaPredicted RBP19.52■□□□□ 0.72
USP41-202ENST00000454608 CHMP7Q8WUX9 453 aaPredicted RBP19.5■□□□□ 0.71
USP41-202ENST00000454608 GRIN2BQ13224 1484 aa19.46■□□□□ 0.71
USP41-202ENST00000454608 FGD5Q6ZNL6 1462 aa19.46■□□□□ 0.71
USP41-202ENST00000454608 SYNJ2O15056 1496 aa19.45■□□□□ 0.7
USP41-202ENST00000454608 GAPVD1Q14C86 1478 aa19.4■□□□□ 0.7
USP41-202ENST00000454608 PBRM1Q86U86 1689 aa19.38■□□□□ 0.69
USP41-202ENST00000454608 CUX1P39880 1505 aa19.36■□□□□ 0.69
USP41-202ENST00000454608 ABCA5Q8WWZ7 1642 aa19.26■□□□□ 0.67
USP41-202ENST00000454608 ABCA10Q8WWZ4 1543 aa19.24■□□□□ 0.67
USP41-202ENST00000454608 ERCC6L2Q5T890 1561 aa19.19■□□□□ 0.66
USP41-202ENST00000454608 GRIN2AQ12879 1464 aa19.19■□□□□ 0.66
USP41-202ENST00000454608 CEP170Q5SW79 1584 aa19.17■□□□□ 0.66
USP41-202ENST00000454608 KIF13AQ9H1H9 1805 aa19.16■□□□□ 0.66
USP41-202ENST00000454608 SHROOM2Q13796 1616 aa19.15■□□□□ 0.66
USP41-202ENST00000454608 NUP160Q12769 1436 aa19.15■□□□□ 0.66
USP41-202ENST00000454608 ADAMTS12P58397 1594 aa19.14■□□□□ 0.65
USP41-202ENST00000454608 FHAD1B1AJZ9 1412 aa19.07■□□□□ 0.64
USP41-202ENST00000454608 WRNQ14191 1432 aaPredicted RBP eCLIP19.07■□□□□ 0.64
USP41-202ENST00000454608 ERICH3Q5RHP9 1530 aa19.01■□□□□ 0.63
USP41-202ENST00000454608 BIVM-ERCC5R4GMW8 1640 aa19■□□□□ 0.63
USP41-202ENST00000454608 TOP2BQ02880 1626 aa18.98■□□□□ 0.63
USP41-202ENST00000454608 PRG4Q92954 1404 aaPredicted RBP18.98■□□□□ 0.63
USP41-202ENST00000454608 ABCC10Q5T3U5 1492 aa18.97■□□□□ 0.63
USP41-202ENST00000454608 MAPKBP1O60336 1514 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms