RNA–Protein interactions for RNA: ENST00000454542.5

HDAC4-205, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 565 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-205ENST00000454542 NISCHQ9Y2I1 1504 aa34.78■■■■□ 3.16
HDAC4-205ENST00000454542 CCDC180Q9P1Z9 1646 aa31.02■■■□□ 2.56
HDAC4-205ENST00000454542 ABCC9O60706 1549 aa30.12■■■□□ 2.41
HDAC4-205ENST00000454542 NACADO15069 1562 aa29.08■■■□□ 2.25
HDAC4-205ENST00000454542 RB1CC1Q8TDY2 1594 aa29.08■■■□□ 2.25
HDAC4-205ENST00000454542 ZCCHC6Q5VYS8 1495 aaKnown RBP29.05■■■□□ 2.24
HDAC4-205ENST00000454542 MYO15BQ96JP2 1530 aa28.99■■■□□ 2.23
HDAC4-205ENST00000454542 DCAF1Q9Y4B6 1507 aa28.88■■■□□ 2.21
HDAC4-205ENST00000454542 DCAF8L2P0C7V8 631 aa28.67■■■□□ 2.18
HDAC4-205ENST00000454542 UNC13AQ9UPW8 1703 aa28.49■■■□□ 2.15
HDAC4-205ENST00000454542 BICRAQ9NZM4 1560 aa28.26■■■□□ 2.11
HDAC4-205ENST00000454542 SCRIBQ14160 1630 aa28.18■■■□□ 2.1
HDAC4-205ENST00000454542 SHROOM4Q9ULL8 1493 aa28.03■■■□□ 2.08
HDAC4-205ENST00000454542 PABPN1Q86U42 306 aaKnown RBP eCLIP28.03■■■□□ 2.08
HDAC4-205ENST00000454542 DNAJC5BQ9UF47 199 aa27.55■■■□□ 2
HDAC4-205ENST00000454542 EIF4G1Q04637 1599 aaKnown RBP27.48■■□□□ 1.99
HDAC4-205ENST00000454542 CC2D2AQ9P2K1 1620 aa27.33■■□□□ 1.97
HDAC4-205ENST00000454542 CECR2Q9BXF3 1484 aa27.08■■□□□ 1.93
HDAC4-205ENST00000454542 SMARCA4P51532 1647 aa27.02■■□□□ 1.92
HDAC4-205ENST00000454542 BAZ1AQ9NRL2 1556 aaPredicted RBP26.97■■□□□ 1.91
HDAC4-205ENST00000454542 ATAD2BQ9ULI0 1458 aa26.82■■□□□ 1.88
HDAC4-205ENST00000454542 PEG3Q9GZU2 1588 aa26.82■■□□□ 1.88
HDAC4-205ENST00000454542 NCAPD3P42695 1498 aa26.81■■□□□ 1.88
HDAC4-205ENST00000454542 SMARCA2P51531 1590 aa26.8■■□□□ 1.88
HDAC4-205ENST00000454542 MROH2BQ7Z745 1585 aa26.79■■□□□ 1.88
HDAC4-205ENST00000454542 HMGXB3Q12766 1538 aa26.75■■□□□ 1.87
HDAC4-205ENST00000454542 BAZ1BQ9UIG0 1483 aaKnown RBP26.57■■□□□ 1.84
HDAC4-205ENST00000454542 WIZO95785 1651 aa26.5■■□□□ 1.83
HDAC4-205ENST00000454542 RSF1Q96T23 1441 aaPredicted RBP26.47■■□□□ 1.83
HDAC4-205ENST00000454542 TOP2AP11388 1531 aaKnown RBP26.28■■□□□ 1.8
HDAC4-205ENST00000454542 LAMC3Q9Y6N6 1575 aa26.12■■□□□ 1.77
HDAC4-205ENST00000454542 NESP48681 1621 aa26.1■■□□□ 1.77
HDAC4-205ENST00000454542 CADPSQ9ULU8 1353 aa25.96■■□□□ 1.75
HDAC4-205ENST00000454542 ERCC6Q03468 1493 aa25.93■■□□□ 1.74
HDAC4-205ENST00000454542 CFTRP13569 1480 aa25.89■■□□□ 1.73
HDAC4-205ENST00000454542 CCDC88BA6NC98 1476 aa25.88■■□□□ 1.73
HDAC4-205ENST00000454542 KIF21AQ7Z4S6 1674 aa25.87■■□□□ 1.73
HDAC4-205ENST00000454542 PDS5BQ9NTI5 1447 aa25.85■■□□□ 1.73
HDAC4-205ENST00000454542 THOC2Q8NI27 1593 aaKnown RBP25.85■■□□□ 1.73
HDAC4-205ENST00000454542 PRDM2Q13029 1718 aa25.8■■□□□ 1.72
HDAC4-205ENST00000454542 CUX2O14529 1486 aa25.77■■□□□ 1.72
HDAC4-205ENST00000454542 FANCD2Q9BXW9 1451 aa25.69■■□□□ 1.7
HDAC4-205ENST00000454542 CEP164Q9UPV0 1460 aa25.66■■□□□ 1.7
HDAC4-205ENST00000454542 MRC2Q9UBG0 1479 aa25.65■■□□□ 1.7
HDAC4-205ENST00000454542 WDR62O43379 1518 aa25.63■■□□□ 1.69
HDAC4-205ENST00000454542 SUPT5HO00267 1087 aaKnown RBP25.57■■□□□ 1.68
HDAC4-205ENST00000454542 URB2Q14146 1524 aaKnown RBP25.47■■□□□ 1.67
HDAC4-205ENST00000454542 DNMBPQ6XZF7 1577 aa25.32■■□□□ 1.64
HDAC4-205ENST00000454542 TOPBP1Q92547 1522 aa25.32■■□□□ 1.64
HDAC4-205ENST00000454542 ABCC8Q09428 1581 aa25.29■■□□□ 1.64
HDAC4-205ENST00000454542 CUX1P39880 1505 aa25.15■■□□□ 1.62
HDAC4-205ENST00000454542 IFT140Q96RY7 1462 aa25.14■■□□□ 1.61
HDAC4-205ENST00000454542 POLA1P09884 1462 aaPredicted RBP25.11■■□□□ 1.61
HDAC4-205ENST00000454542 TARBP1Q13395 1621 aaKnown RBP25.08■■□□□ 1.61
HDAC4-205ENST00000454542 FGD5Q6ZNL6 1462 aa25.03■■□□□ 1.6
HDAC4-205ENST00000454542 ZNF608Q9ULD9 1512 aaPredicted RBP25■■□□□ 1.59
HDAC4-205ENST00000454542 BIVM-ERCC5R4GMW8 1640 aa25■■□□□ 1.59
HDAC4-205ENST00000454542 EIF4G3O43432 1585 aaKnown RBP24.98■■□□□ 1.59
HDAC4-205ENST00000454542 WDR97A6NE52 1622 aa24.97■■□□□ 1.59
HDAC4-205ENST00000454542 TOP2BQ02880 1626 aa24.97■■□□□ 1.59
HDAC4-205ENST00000454542 SYNJ1O43426 1573 aa24.95■■□□□ 1.58
HDAC4-205ENST00000454542 WRNQ14191 1432 aaPredicted RBP eCLIP24.94■■□□□ 1.58
HDAC4-205ENST00000454542 RAD54L2Q9Y4B4 1467 aa24.93■■□□□ 1.58
HDAC4-205ENST00000454542 SOGA1O94964 1423 aa24.9■■□□□ 1.58
HDAC4-205ENST00000454542 ABCA10Q8WWZ4 1543 aa24.82■■□□□ 1.56
HDAC4-205ENST00000454542 AQRO60306 1485 aaKnown RBP eCLIP24.8■■□□□ 1.566e-8■■□□□ 14.1
HDAC4-205ENST00000454542 DNAJC5Q9H3Z4 198 aa24.79■■□□□ 1.56
HDAC4-205ENST00000454542 ABCA5Q8WWZ7 1642 aa24.79■■□□□ 1.56
HDAC4-205ENST00000454542 TDRD9Q8NDG6 1382 aaKnown RBP24.73■■□□□ 1.55
HDAC4-205ENST00000454542 PBRM1Q86U86 1689 aa24.72■■□□□ 1.55
HDAC4-205ENST00000454542 GRIN2BQ13224 1484 aa24.68■■□□□ 1.54
HDAC4-205ENST00000454542 GAPVD1Q14C86 1478 aa24.66■■□□□ 1.54
HDAC4-205ENST00000454542 SNAPC4Q5SXM2 1469 aa24.64■■□□□ 1.54
HDAC4-205ENST00000454542 MAGI1Q96QZ7 1491 aaPredicted RBP24.64■■□□□ 1.54
HDAC4-205ENST00000454542 CHD1O14646 1710 aa24.64■■□□□ 1.54
HDAC4-205ENST00000454542 ERICH3Q5RHP9 1530 aa24.54■■□□□ 1.52
HDAC4-205ENST00000454542 ADAMTS12P58397 1594 aa24.54■■□□□ 1.52
HDAC4-205ENST00000454542 SYNJ2O15056 1496 aa24.53■■□□□ 1.52
HDAC4-205ENST00000454542 OSCARQ8IYS5 282 aa24.5■■□□□ 1.51
HDAC4-205ENST00000454542 CLASP1Q7Z460 1538 aa24.42■■□□□ 1.5
HDAC4-205ENST00000454542 FHAD1B1AJZ9 1412 aa24.39■■□□□ 1.5
HDAC4-205ENST00000454542 KIF27Q86VH2 1401 aa24.39■■□□□ 1.5
HDAC4-205ENST00000454542 GRIN2AQ12879 1464 aa24.38■■□□□ 1.49
HDAC4-205ENST00000454542 CUL7Q14999 1698 aa24.34■■□□□ 1.49
HDAC4-205ENST00000454542 CHMP7Q8WUX9 453 aaPredicted RBP24.33■■□□□ 1.49
HDAC4-205ENST00000454542 FBLN2P98095 1184 aa24.32■■□□□ 1.48
HDAC4-205ENST00000454542 NUP160Q12769 1436 aa24.31■■□□□ 1.48
HDAC4-205ENST00000454542 CEP170Q5SW79 1584 aa24.29■■□□□ 1.48
HDAC4-205ENST00000454542 RIMBP3CA6NJZ7 1639 aa24.29■■□□□ 1.48
HDAC4-205ENST00000454542 RIMBP3BA6NNM3 1639 aa24.29■■□□□ 1.48
HDAC4-205ENST00000454542 RIMBP3Q9UFD9 1639 aa24.29■■□□□ 1.48
HDAC4-205ENST00000454542 ARHGEF11O15085 1522 aa24.29■■□□□ 1.48
HDAC4-205ENST00000454542 IGF1RP08069 1367 aa24.28■■□□□ 1.48
HDAC4-205ENST00000454542 RUSC2Q8N2Y8 1516 aa24.19■■□□□ 1.46
HDAC4-205ENST00000454542 TRIM41Q8WV44 630 aa24.18■■□□□ 1.46
HDAC4-205ENST00000454542 SHROOM2Q13796 1616 aa24.17■■□□□ 1.46
HDAC4-205ENST00000454542 CARMIL1Q5VZK9 1371 aa24.12■■□□□ 1.45
HDAC4-205ENST00000454542 ARAP1Q96P48 1450 aa24.11■■□□□ 1.45
HDAC4-205ENST00000454542 KIAA0586Q9BVV6 1533 aa24.03■■□□□ 1.44
HDAC4-205ENST00000454542 RAPGEF2Q9Y4G8 1499 aa24.02■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms