RNA–Protein interactions for RNA: ENST00000454428.5

UBE2D4-209, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), humanhuman

TSL 3

Gene UBE2D4, Length 288 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4-209ENST00000454428 NISCHQ9Y2I1 1504 aa44.24■■■■■ 4.67
UBE2D4-209ENST00000454428 ABCC9O60706 1549 aa40.48■■■■■ 4.07
UBE2D4-209ENST00000454428 CCDC180Q9P1Z9 1646 aa39.93■■■■□ 3.98
UBE2D4-209ENST00000454428 DNAJC5BQ9UF47 199 aa38.57■■■■□ 3.76
UBE2D4-209ENST00000454428 RB1CC1Q8TDY2 1594 aa38.25■■■■□ 3.71
UBE2D4-209ENST00000454428 NACADO15069 1562 aa37.87■■■■□ 3.65
UBE2D4-209ENST00000454428 PABPN1Q86U42 306 aaKnown RBP eCLIP37.59■■■■□ 3.61
UBE2D4-209ENST00000454428 UNC13AQ9UPW8 1703 aa37.5■■■■□ 3.59
UBE2D4-209ENST00000454428 DCAF8L2P0C7V8 631 aa37.44■■■■□ 3.58
UBE2D4-209ENST00000454428 BICRAQ9NZM4 1560 aa37.28■■■■□ 3.56
UBE2D4-209ENST00000454428 MYO15BQ96JP2 1530 aa37.18■■■■□ 3.54
UBE2D4-209ENST00000454428 SHROOM4Q9ULL8 1493 aa36.6■■■■□ 3.45
UBE2D4-209ENST00000454428 CC2D2AQ9P2K1 1620 aa36.57■■■■□ 3.44
UBE2D4-209ENST00000454428 ZCCHC6Q5VYS8 1495 aaKnown RBP36.56■■■■□ 3.44
UBE2D4-209ENST00000454428 CECR2Q9BXF3 1484 aa36.51■■■■□ 3.44
UBE2D4-209ENST00000454428 DCAF1Q9Y4B6 1507 aa36.5■■■■□ 3.43
UBE2D4-209ENST00000454428 SCRIBQ14160 1630 aa36.36■■■■□ 3.41
UBE2D4-209ENST00000454428 EIF4G1Q04637 1599 aaKnown RBP36.35■■■■□ 3.41
UBE2D4-209ENST00000454428 DNAJC5Q9H3Z4 198 aa35.75■■■■□ 3.31
UBE2D4-209ENST00000454428 CUX2O14529 1486 aa35.09■■■■□ 3.21
UBE2D4-209ENST00000454428 NCAPD3P42695 1498 aa34.99■■■■□ 3.19
UBE2D4-209ENST00000454428 ERCC6Q03468 1493 aa34.92■■■■□ 3.18
UBE2D4-209ENST00000454428 ATAD2BQ9ULI0 1458 aa34.82■■■■□ 3.16
UBE2D4-209ENST00000454428 HMGXB3Q12766 1538 aa34.67■■■■□ 3.14
UBE2D4-209ENST00000454428 NESP48681 1621 aa34.66■■■■□ 3.14
UBE2D4-209ENST00000454428 SMARCA4P51532 1647 aa34.64■■■■□ 3.14
UBE2D4-209ENST00000454428 SMARCA2P51531 1590 aa34.63■■■■□ 3.13
UBE2D4-209ENST00000454428 THOC2Q8NI27 1593 aaKnown RBP34.44■■■■□ 3.1
UBE2D4-209ENST00000454428 BAZ1BQ9UIG0 1483 aaKnown RBP34.39■■■■□ 3.1
UBE2D4-209ENST00000454428 PEG3Q9GZU2 1588 aa34.33■■■■□ 3.09
UBE2D4-209ENST00000454428 BAZ1AQ9NRL2 1556 aaPredicted RBP34.33■■■■□ 3.09
UBE2D4-209ENST00000454428 LAMC3Q9Y6N6 1575 aa34.27■■■■□ 3.08
UBE2D4-209ENST00000454428 KIF21AQ7Z4S6 1674 aa34.19■■■■□ 3.06
UBE2D4-209ENST00000454428 MROH2BQ7Z745 1585 aa34.11■■■■□ 3.05
UBE2D4-209ENST00000454428 PDS5BQ9NTI5 1447 aa34.04■■■■□ 3.04
UBE2D4-209ENST00000454428 TRIM41Q8WV44 630 aa33.88■■■■□ 3.01
UBE2D4-209ENST00000454428 CADPSQ9ULU8 1353 aa33.86■■■■□ 3.01
UBE2D4-209ENST00000454428 MRC2Q9UBG0 1479 aa33.82■■■■□ 3.01
UBE2D4-209ENST00000454428 WDR62O43379 1518 aa33.8■■■■□ 3
UBE2D4-209ENST00000454428 WIZO95785 1651 aa33.67■■■□□ 2.98
UBE2D4-209ENST00000454428 CEP164Q9UPV0 1460 aa33.56■■■□□ 2.96
UBE2D4-209ENST00000454428 FANCD2Q9BXW9 1451 aa33.5■■■□□ 2.95
UBE2D4-209ENST00000454428 CFTRP13569 1480 aa33.39■■■□□ 2.94
UBE2D4-209ENST00000454428 OSCARQ8IYS5 282 aa33.35■■■□□ 2.93
UBE2D4-209ENST00000454428 URB2Q14146 1524 aaKnown RBP33.31■■■□□ 2.92
UBE2D4-209ENST00000454428 RSF1Q96T23 1441 aaPredicted RBP33.18■■■□□ 2.9
UBE2D4-209ENST00000454428 TOP2AP11388 1531 aaKnown RBP33.17■■■□□ 2.9
UBE2D4-209ENST00000454428 RIMBP3CA6NJZ7 1639 aa33.08■■■□□ 2.89
UBE2D4-209ENST00000454428 RIMBP3BA6NNM3 1639 aa33.08■■■□□ 2.89
UBE2D4-209ENST00000454428 RIMBP3Q9UFD9 1639 aa33.08■■■□□ 2.89
UBE2D4-209ENST00000454428 PRDM2Q13029 1718 aa33.02■■■□□ 2.88
UBE2D4-209ENST00000454428 ZNF608Q9ULD9 1512 aaPredicted RBP32.99■■■□□ 2.87
UBE2D4-209ENST00000454428 IFT140Q96RY7 1462 aa32.92■■■□□ 2.86
UBE2D4-209ENST00000454428 ARHGEF11O15085 1522 aa32.9■■■□□ 2.86
UBE2D4-209ENST00000454428 TOPBP1Q92547 1522 aa32.82■■■□□ 2.85
UBE2D4-209ENST00000454428 CCDC88BA6NC98 1476 aa32.82■■■□□ 2.84
UBE2D4-209ENST00000454428 EIF4G3O43432 1585 aaKnown RBP32.76■■■□□ 2.84
UBE2D4-209ENST00000454428 CHD1O14646 1710 aa32.63■■■□□ 2.81
UBE2D4-209ENST00000454428 ABCC8Q09428 1581 aa32.63■■■□□ 2.81
UBE2D4-209ENST00000454428 DNMBPQ6XZF7 1577 aa32.63■■■□□ 2.81
UBE2D4-209ENST00000454428 CYB5RLQ6IPT4 315 aa32.63■■■□□ 2.81
UBE2D4-209ENST00000454428 TARBP1Q13395 1621 aaKnown RBP32.62■■■□□ 2.81
UBE2D4-209ENST00000454428 AQRO60306 1485 aaKnown RBP eCLIP32.59■■■□□ 2.81
UBE2D4-209ENST00000454428 ARAP1Q96P48 1450 aa32.56■■■□□ 2.8
UBE2D4-209ENST00000454428 POLA1P09884 1462 aaPredicted RBP32.46■■■□□ 2.79
UBE2D4-209ENST00000454428 TRHP20396 242 aaPredicted RBP32.39■■■□□ 2.78
UBE2D4-209ENST00000454428 FBLN2P98095 1184 aa32.38■■■□□ 2.77
UBE2D4-209ENST00000454428 RAD54L2Q9Y4B4 1467 aa32.35■■■□□ 2.77
UBE2D4-209ENST00000454428 TDRD9Q8NDG6 1382 aaKnown RBP32.28■■■□□ 2.76
UBE2D4-209ENST00000454428 CLASP1Q7Z460 1538 aa32.26■■■□□ 2.76
UBE2D4-209ENST00000454428 SOGA1O94964 1423 aa32.25■■■□□ 2.75
UBE2D4-209ENST00000454428 SNAPC4Q5SXM2 1469 aa32.23■■■□□ 2.75
UBE2D4-209ENST00000454428 WDR97A6NE52 1622 aa32.17■■■□□ 2.74
UBE2D4-209ENST00000454428 FGD5Q6ZNL6 1462 aa32.16■■■□□ 2.74
UBE2D4-209ENST00000454428 SYNJ1O43426 1573 aa32.11■■■□□ 2.73
UBE2D4-209ENST00000454428 MAGI1Q96QZ7 1491 aaPredicted RBP32.1■■■□□ 2.73
UBE2D4-209ENST00000454428 CUX1P39880 1505 aa32.07■■■□□ 2.72
UBE2D4-209ENST00000454428 CHMP7Q8WUX9 453 aaPredicted RBP32.06■■■□□ 2.72
UBE2D4-209ENST00000454428 GRIN2BQ13224 1484 aa32.03■■■□□ 2.72
UBE2D4-209ENST00000454428 SYNJ2O15056 1496 aa32.01■■■□□ 2.71
UBE2D4-209ENST00000454428 PBRM1Q86U86 1689 aa31.92■■■□□ 2.7
UBE2D4-209ENST00000454428 GAPVD1Q14C86 1478 aa31.9■■■□□ 2.7
UBE2D4-209ENST00000454428 AEBP2Q6ZN18 517 aaPredicted RBP31.82■■■□□ 2.68
UBE2D4-209ENST00000454428 ABCA5Q8WWZ7 1642 aa31.8■■■□□ 2.68
UBE2D4-209ENST00000454428 ABCA10Q8WWZ4 1543 aa31.76■■■□□ 2.68
UBE2D4-209ENST00000454428 ERCC6L2Q5T890 1561 aa31.75■■■□□ 2.67
UBE2D4-209ENST00000454428 GRIN2AQ12879 1464 aa31.65■■■□□ 2.66
UBE2D4-209ENST00000454428 CEP170Q5SW79 1584 aa31.61■■■□□ 2.65
UBE2D4-209ENST00000454428 NUP160Q12769 1436 aa31.58■■■□□ 2.65
UBE2D4-209ENST00000454428 ADAMTS12P58397 1594 aa31.58■■■□□ 2.65
UBE2D4-209ENST00000454428 SHROOM2Q13796 1616 aa31.54■■■□□ 2.64
UBE2D4-209ENST00000454428 WRNQ14191 1432 aaPredicted RBP eCLIP31.47■■■□□ 2.63
UBE2D4-209ENST00000454428 KIF13AQ9H1H9 1805 aa31.44■■■□□ 2.62
UBE2D4-209ENST00000454428 FHAD1B1AJZ9 1412 aa31.42■■■□□ 2.62
UBE2D4-209ENST00000454428 BIVM-ERCC5R4GMW8 1640 aa31.4■■■□□ 2.62
UBE2D4-209ENST00000454428 TOP2BQ02880 1626 aa31.38■■■□□ 2.61
UBE2D4-209ENST00000454428 ERICH3Q5RHP9 1530 aa31.34■■■□□ 2.61
UBE2D4-209ENST00000454428 PRG4Q92954 1404 aaPredicted RBP31.29■■■□□ 2.6
UBE2D4-209ENST00000454428 JPH4Q96JJ6 628 aa31.2■■■□□ 2.59
UBE2D4-209ENST00000454428 SUPT5HO00267 1087 aaKnown RBP31.18■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms