RNA–Protein interactions for RNA: ENST00000454398.1

HLA-DPA3-207, Transcript of major histocompatibility complex, class II, DP alpha 3 (pseudogene), humanhuman

BASIC

Gene HLA-DPA3, Length 229 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA3-207ENST00000454398 NISCHQ9Y2I1 1504 aa15.35■□□□□ 0.05
HLA-DPA3-207ENST00000454398 ABCC9O60706 1549 aa13.97□□□□□ -0.17
HLA-DPA3-207ENST00000454398 CCDC180Q9P1Z9 1646 aa13.81□□□□□ -0.2
HLA-DPA3-207ENST00000454398 DNAJC5BQ9UF47 199 aa13.33□□□□□ -0.28
HLA-DPA3-207ENST00000454398 RB1CC1Q8TDY2 1594 aa13.16□□□□□ -0.3
HLA-DPA3-207ENST00000454398 NACADO15069 1562 aa13.02□□□□□ -0.33
HLA-DPA3-207ENST00000454398 PABPN1Q86U42 306 aaKnown RBP eCLIP13.01□□□□□ -0.33
HLA-DPA3-207ENST00000454398 UNC13AQ9UPW8 1703 aa12.99□□□□□ -0.33
HLA-DPA3-207ENST00000454398 DCAF8L2P0C7V8 631 aa12.96□□□□□ -0.33
HLA-DPA3-207ENST00000454398 BICRAQ9NZM4 1560 aa12.93□□□□□ -0.34
HLA-DPA3-207ENST00000454398 MYO15BQ96JP2 1530 aa12.8□□□□□ -0.36
HLA-DPA3-207ENST00000454398 ZCCHC6Q5VYS8 1495 aaKnown RBP12.73□□□□□ -0.37
HLA-DPA3-207ENST00000454398 SCRIBQ14160 1630 aa12.7□□□□□ -0.38
HLA-DPA3-207ENST00000454398 DCAF1Q9Y4B6 1507 aa12.62□□□□□ -0.39
HLA-DPA3-207ENST00000454398 CC2D2AQ9P2K1 1620 aa12.59□□□□□ -0.39
HLA-DPA3-207ENST00000454398 CECR2Q9BXF3 1484 aa12.55□□□□□ -0.4
HLA-DPA3-207ENST00000454398 EIF4G1Q04637 1599 aaKnown RBP12.54□□□□□ -0.4
HLA-DPA3-207ENST00000454398 SHROOM4Q9ULL8 1493 aa12.53□□□□□ -0.4
HLA-DPA3-207ENST00000454398 DNAJC5Q9H3Z4 198 aa12.15□□□□□ -0.46
HLA-DPA3-207ENST00000454398 NCAPD3P42695 1498 aa12.07□□□□□ -0.48
HLA-DPA3-207ENST00000454398 ATAD2BQ9ULI0 1458 aa12.06□□□□□ -0.48
HLA-DPA3-207ENST00000454398 ERCC6Q03468 1493 aa12.03□□□□□ -0.48
HLA-DPA3-207ENST00000454398 NESP48681 1621 aa12.03□□□□□ -0.48
HLA-DPA3-207ENST00000454398 SMARCA4P51532 1647 aa12.03□□□□□ -0.48
HLA-DPA3-207ENST00000454398 CUX2O14529 1486 aa11.98□□□□□ -0.49
HLA-DPA3-207ENST00000454398 HMGXB3Q12766 1538 aa11.96□□□□□ -0.49
HLA-DPA3-207ENST00000454398 SMARCA2P51531 1590 aa11.96□□□□□ -0.5
HLA-DPA3-207ENST00000454398 BAZ1BQ9UIG0 1483 aaKnown RBP11.91□□□□□ -0.5
HLA-DPA3-207ENST00000454398 MROH2BQ7Z745 1585 aa11.9□□□□□ -0.5
HLA-DPA3-207ENST00000454398 THOC2Q8NI27 1593 aaKnown RBP11.89□□□□□ -0.51
HLA-DPA3-207ENST00000454398 BAZ1AQ9NRL2 1556 aaPredicted RBP11.89□□□□□ -0.51
HLA-DPA3-207ENST00000454398 PEG3Q9GZU2 1588 aa11.88□□□□□ -0.51
HLA-DPA3-207ENST00000454398 KIF21AQ7Z4S6 1674 aa11.85□□□□□ -0.51
HLA-DPA3-207ENST00000454398 LAMC3Q9Y6N6 1575 aa11.79□□□□□ -0.52
HLA-DPA3-207ENST00000454398 WIZO95785 1651 aa11.75□□□□□ -0.53
HLA-DPA3-207ENST00000454398 CADPSQ9ULU8 1353 aa11.68□□□□□ -0.54
HLA-DPA3-207ENST00000454398 PDS5BQ9NTI5 1447 aa11.68□□□□□ -0.54
HLA-DPA3-207ENST00000454398 MRC2Q9UBG0 1479 aa11.67□□□□□ -0.54
HLA-DPA3-207ENST00000454398 WDR62O43379 1518 aa11.65□□□□□ -0.54
HLA-DPA3-207ENST00000454398 CEP164Q9UPV0 1460 aa11.6□□□□□ -0.55
HLA-DPA3-207ENST00000454398 TRIM41Q8WV44 630 aa11.58□□□□□ -0.56
HLA-DPA3-207ENST00000454398 RSF1Q96T23 1441 aaPredicted RBP11.58□□□□□ -0.56
HLA-DPA3-207ENST00000454398 FANCD2Q9BXW9 1451 aa11.57□□□□□ -0.56
HLA-DPA3-207ENST00000454398 CFTRP13569 1480 aa11.56□□□□□ -0.56
HLA-DPA3-207ENST00000454398 URB2Q14146 1524 aaKnown RBP11.55□□□□□ -0.56
HLA-DPA3-207ENST00000454398 TOP2AP11388 1531 aaKnown RBP11.55□□□□□ -0.56
HLA-DPA3-207ENST00000454398 PRDM2Q13029 1718 aa11.47□□□□□ -0.57
HLA-DPA3-207ENST00000454398 ZNF608Q9ULD9 1512 aaPredicted RBP11.45□□□□□ -0.58
HLA-DPA3-207ENST00000454398 CCDC88BA6NC98 1476 aa11.42□□□□□ -0.58
HLA-DPA3-207ENST00000454398 EIF4G3O43432 1585 aaKnown RBP11.37□□□□□ -0.59
HLA-DPA3-207ENST00000454398 OSCARQ8IYS5 282 aa11.37□□□□□ -0.59
HLA-DPA3-207ENST00000454398 RIMBP3CA6NJZ7 1639 aa11.37□□□□□ -0.59
HLA-DPA3-207ENST00000454398 RIMBP3BA6NNM3 1639 aa11.37□□□□□ -0.59
HLA-DPA3-207ENST00000454398 RIMBP3Q9UFD9 1639 aa11.37□□□□□ -0.59
HLA-DPA3-207ENST00000454398 TOPBP1Q92547 1522 aa11.36□□□□□ -0.59
HLA-DPA3-207ENST00000454398 IFT140Q96RY7 1462 aa11.32□□□□□ -0.6
HLA-DPA3-207ENST00000454398 CHD1O14646 1710 aa11.32□□□□□ -0.6
HLA-DPA3-207ENST00000454398 ARHGEF11O15085 1522 aa11.31□□□□□ -0.6
HLA-DPA3-207ENST00000454398 DNMBPQ6XZF7 1577 aa11.31□□□□□ -0.6
HLA-DPA3-207ENST00000454398 TARBP1Q13395 1621 aaKnown RBP11.29□□□□□ -0.6
HLA-DPA3-207ENST00000454398 AQRO60306 1485 aaKnown RBP eCLIP11.29□□□□□ -0.6
HLA-DPA3-207ENST00000454398 POLA1P09884 1462 aaPredicted RBP11.25□□□□□ -0.61
HLA-DPA3-207ENST00000454398 RAD54L2Q9Y4B4 1467 aa11.25□□□□□ -0.61
HLA-DPA3-207ENST00000454398 ARAP1Q96P48 1450 aa11.24□□□□□ -0.61
HLA-DPA3-207ENST00000454398 ABCC8Q09428 1581 aa11.19□□□□□ -0.62
HLA-DPA3-207ENST00000454398 TDRD9Q8NDG6 1382 aaKnown RBP11.18□□□□□ -0.62
HLA-DPA3-207ENST00000454398 CYB5RLQ6IPT4 315 aa11.18□□□□□ -0.62
HLA-DPA3-207ENST00000454398 CUX1P39880 1505 aa11.18□□□□□ -0.62
HLA-DPA3-207ENST00000454398 SNAPC4Q5SXM2 1469 aa11.18□□□□□ -0.62
HLA-DPA3-207ENST00000454398 FGD5Q6ZNL6 1462 aa11.18□□□□□ -0.62
HLA-DPA3-207ENST00000454398 FBLN2P98095 1184 aa11.17□□□□□ -0.62
HLA-DPA3-207ENST00000454398 CLASP1Q7Z460 1538 aa11.14□□□□□ -0.63
HLA-DPA3-207ENST00000454398 WDR97A6NE52 1622 aa11.14□□□□□ -0.63
HLA-DPA3-207ENST00000454398 SOGA1O94964 1423 aa11.13□□□□□ -0.63
HLA-DPA3-207ENST00000454398 PBRM1Q86U86 1689 aa11.11□□□□□ -0.63
HLA-DPA3-207ENST00000454398 SYNJ1O43426 1573 aa11.07□□□□□ -0.64
HLA-DPA3-207ENST00000454398 TRHP20396 242 aaPredicted RBP11.07□□□□□ -0.64
HLA-DPA3-207ENST00000454398 MAGI1Q96QZ7 1491 aaPredicted RBP11.06□□□□□ -0.64
HLA-DPA3-207ENST00000454398 ERCC6L2Q5T890 1561 aa11.06□□□□□ -0.64
HLA-DPA3-207ENST00000454398 GRIN2BQ13224 1484 aa11.06□□□□□ -0.64
HLA-DPA3-207ENST00000454398 ABCA5Q8WWZ7 1642 aa11.06□□□□□ -0.64
HLA-DPA3-207ENST00000454398 SYNJ2O15056 1496 aa11.04□□□□□ -0.64
HLA-DPA3-207ENST00000454398 GAPVD1Q14C86 1478 aa11.01□□□□□ -0.65
HLA-DPA3-207ENST00000454398 CHMP7Q8WUX9 453 aaPredicted RBP11.01□□□□□ -0.65
HLA-DPA3-207ENST00000454398 ABCA10Q8WWZ4 1543 aa10.99□□□□□ -0.65
HLA-DPA3-207ENST00000454398 ADAMTS12P58397 1594 aa10.99□□□□□ -0.65
HLA-DPA3-207ENST00000454398 CEP170Q5SW79 1584 aa10.98□□□□□ -0.65
HLA-DPA3-207ENST00000454398 SUPT5HO00267 1087 aaKnown RBP10.97□□□□□ -0.65
HLA-DPA3-207ENST00000454398 GRIN2AQ12879 1464 aa10.95□□□□□ -0.66
HLA-DPA3-207ENST00000454398 BIVM-ERCC5R4GMW8 1640 aa10.94□□□□□ -0.66
HLA-DPA3-207ENST00000454398 NUP160Q12769 1436 aa10.93□□□□□ -0.66
HLA-DPA3-207ENST00000454398 TOP2BQ02880 1626 aa10.92□□□□□ -0.66
HLA-DPA3-207ENST00000454398 WRNQ14191 1432 aaPredicted RBP eCLIP10.9□□□□□ -0.66
HLA-DPA3-207ENST00000454398 SHROOM2Q13796 1616 aa10.89□□□□□ -0.67
HLA-DPA3-207ENST00000454398 AEBP2Q6ZN18 517 aaPredicted RBP10.86□□□□□ -0.67
HLA-DPA3-207ENST00000454398 RUSC2Q8N2Y8 1516 aa10.85□□□□□ -0.67
HLA-DPA3-207ENST00000454398 FHAD1B1AJZ9 1412 aa10.84□□□□□ -0.67
HLA-DPA3-207ENST00000454398 KIF13AQ9H1H9 1805 aa10.84□□□□□ -0.67
HLA-DPA3-207ENST00000454398 ERICH3Q5RHP9 1530 aa10.83□□□□□ -0.68
HLA-DPA3-207ENST00000454398 PRG4Q92954 1404 aaPredicted RBP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 186.6 ms