RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 NISCHQ9Y2I1 1504 aa29.96■■■□□ 2.39
USP40-210ENST00000454354 CCDC180Q9P1Z9 1646 aa26.89■■□□□ 1.9
USP40-210ENST00000454354 ABCC9O60706 1549 aa26.39■■□□□ 1.81
USP40-210ENST00000454354 RB1CC1Q8TDY2 1594 aa25.36■■□□□ 1.65
USP40-210ENST00000454354 NACADO15069 1562 aa25.26■■□□□ 1.63
USP40-210ENST00000454354 MYO15BQ96JP2 1530 aa25.06■■□□□ 1.6
USP40-210ENST00000454354 ZCCHC6Q5VYS8 1495 aaKnown RBP24.93■■□□□ 1.58
USP40-210ENST00000454354 DCAF8L2P0C7V8 631 aa24.92■■□□□ 1.58
USP40-210ENST00000454354 UNC13AQ9UPW8 1703 aa24.9■■□□□ 1.58
USP40-210ENST00000454354 DCAF1Q9Y4B6 1507 aa24.84■■□□□ 1.57
USP40-210ENST00000454354 BICRAQ9NZM4 1560 aa24.62■■□□□ 1.53
USP40-210ENST00000454354 PABPN1Q86U42 306 aaKnown RBP eCLIP24.52■■□□□ 1.52
USP40-210ENST00000454354 DNAJC5BQ9UF47 199 aa24.41■■□□□ 1.5
USP40-210ENST00000454354 SCRIBQ14160 1630 aa24.4■■□□□ 1.5
USP40-210ENST00000454354 SHROOM4Q9ULL8 1493 aa24.37■■□□□ 1.49
USP40-210ENST00000454354 EIF4G1Q04637 1599 aaKnown RBP23.97■■□□□ 1.43
USP40-210ENST00000454354 CC2D2AQ9P2K1 1620 aa23.94■■□□□ 1.42
USP40-210ENST00000454354 CECR2Q9BXF3 1484 aa23.76■■□□□ 1.39
USP40-210ENST00000454354 SMARCA4P51532 1647 aa23.36■■□□□ 1.33
USP40-210ENST00000454354 BAZ1AQ9NRL2 1556 aaPredicted RBP23.27■■□□□ 1.32
USP40-210ENST00000454354 NCAPD3P42695 1498 aa23.26■■□□□ 1.31
USP40-210ENST00000454354 ATAD2BQ9ULI0 1458 aa23.24■■□□□ 1.31
USP40-210ENST00000454354 SMARCA2P51531 1590 aa23.23■■□□□ 1.31
USP40-210ENST00000454354 HMGXB3Q12766 1538 aa23.2■■□□□ 1.3
USP40-210ENST00000454354 PEG3Q9GZU2 1588 aa23.16■■□□□ 1.3
USP40-210ENST00000454354 MROH2BQ7Z745 1585 aa23.07■■□□□ 1.28
USP40-210ENST00000454354 BAZ1BQ9UIG0 1483 aaKnown RBP23.02■■□□□ 1.28
USP40-210ENST00000454354 WIZO95785 1651 aa22.85■■□□□ 1.25
USP40-210ENST00000454354 NESP48681 1621 aa22.77■■□□□ 1.24
USP40-210ENST00000454354 ERCC6Q03468 1493 aa22.76■■□□□ 1.23
USP40-210ENST00000454354 LAMC3Q9Y6N6 1575 aa22.76■■□□□ 1.23
USP40-210ENST00000454354 CUX2O14529 1486 aa22.69■■□□□ 1.22
USP40-210ENST00000454354 RSF1Q96T23 1441 aaPredicted RBP22.68■■□□□ 1.22
USP40-210ENST00000454354 KIF21AQ7Z4S6 1674 aa22.62■■□□□ 1.21
USP40-210ENST00000454354 THOC2Q8NI27 1593 aaKnown RBP22.59■■□□□ 1.21
USP40-210ENST00000454354 TOP2AP11388 1531 aaKnown RBP22.59■■□□□ 1.21
USP40-210ENST00000454354 CADPSQ9ULU8 1353 aa22.54■■□□□ 1.2
USP40-210ENST00000454354 PDS5BQ9NTI5 1447 aa22.52■■□□□ 1.2
USP40-210ENST00000454354 CFTRP13569 1480 aa22.39■■□□□ 1.17
USP40-210ENST00000454354 PRDM2Q13029 1718 aa22.38■■□□□ 1.17
USP40-210ENST00000454354 MRC2Q9UBG0 1479 aa22.34■■□□□ 1.17
USP40-210ENST00000454354 WDR62O43379 1518 aa22.32■■□□□ 1.16
USP40-210ENST00000454354 CEP164Q9UPV0 1460 aa22.31■■□□□ 1.16
USP40-210ENST00000454354 FANCD2Q9BXW9 1451 aa22.3■■□□□ 1.16
USP40-210ENST00000454354 CCDC88BA6NC98 1476 aa22.27■■□□□ 1.16
USP40-210ENST00000454354 DNAJC5Q9H3Z4 198 aa22.22■■□□□ 1.15
USP40-210ENST00000454354 URB2Q14146 1524 aaKnown RBP22.12■■□□□ 1.13
USP40-210ENST00000454354 TOPBP1Q92547 1522 aa21.94■■□□□ 1.1
USP40-210ENST00000454354 DNMBPQ6XZF7 1577 aa21.93■■□□□ 1.1
USP40-210ENST00000454354 ABCC8Q09428 1581 aa21.92■■□□□ 1.1
USP40-210ENST00000454354 IFT140Q96RY7 1462 aa21.85■■□□□ 1.09
USP40-210ENST00000454354 TARBP1Q13395 1621 aaKnown RBP21.77■■□□□ 1.08
USP40-210ENST00000454354 ZNF608Q9ULD9 1512 aaPredicted RBP21.77■■□□□ 1.08
USP40-210ENST00000454354 EIF4G3O43432 1585 aaKnown RBP21.75■■□□□ 1.07
USP40-210ENST00000454354 SUPT5HO00267 1087 aaKnown RBP21.75■■□□□ 1.07
USP40-210ENST00000454354 POLA1P09884 1462 aaPredicted RBP21.73■■□□□ 1.07
USP40-210ENST00000454354 CUX1P39880 1505 aa21.68■■□□□ 1.06
USP40-210ENST00000454354 WDR97A6NE52 1622 aa21.63■■□□□ 1.05
USP40-210ENST00000454354 FGD5Q6ZNL6 1462 aa21.63■■□□□ 1.05
USP40-210ENST00000454354 RAD54L2Q9Y4B4 1467 aa21.59■■□□□ 1.05
USP40-210ENST00000454354 OSCARQ8IYS5 282 aa21.58■■□□□ 1.05
USP40-210ENST00000454354 AQRO60306 1485 aaKnown RBP eCLIP21.58■■□□□ 1.04
USP40-210ENST00000454354 SOGA1O94964 1423 aa21.56■■□□□ 1.04
USP40-210ENST00000454354 CHD1O14646 1710 aa21.56■■□□□ 1.04
USP40-210ENST00000454354 BIVM-ERCC5R4GMW8 1640 aa21.5■■□□□ 1.03
USP40-210ENST00000454354 TDRD9Q8NDG6 1382 aaKnown RBP21.47■■□□□ 1.03
USP40-210ENST00000454354 TOP2BQ02880 1626 aa21.46■■□□□ 1.03
USP40-210ENST00000454354 PBRM1Q86U86 1689 aa21.46■■□□□ 1.03
USP40-210ENST00000454354 ABCA10Q8WWZ4 1543 aa21.43■■□□□ 1.02
USP40-210ENST00000454354 ABCA5Q8WWZ7 1642 aa21.43■■□□□ 1.02
USP40-210ENST00000454354 SYNJ1O43426 1573 aa21.42■■□□□ 1.02
USP40-210ENST00000454354 RIMBP3CA6NJZ7 1639 aa21.41■■□□□ 1.02
USP40-210ENST00000454354 RIMBP3BA6NNM3 1639 aa21.41■■□□□ 1.02
USP40-210ENST00000454354 RIMBP3Q9UFD9 1639 aa21.41■■□□□ 1.02
USP40-210ENST00000454354 SNAPC4Q5SXM2 1469 aa21.41■■□□□ 1.02
USP40-210ENST00000454354 GRIN2BQ13224 1484 aa21.4■■□□□ 1.02
USP40-210ENST00000454354 MAGI1Q96QZ7 1491 aaPredicted RBP21.4■■□□□ 1.02
USP40-210ENST00000454354 WRNQ14191 1432 aaPredicted RBP eCLIP21.38■■□□□ 1.01
USP40-210ENST00000454354 GAPVD1Q14C86 1478 aa21.36■■□□□ 1.01
USP40-210ENST00000454354 ARHGEF11O15085 1522 aa21.34■■□□□ 1.01
USP40-210ENST00000454354 SYNJ2O15056 1496 aa21.31■■□□□ 1
USP40-210ENST00000454354 TRIM41Q8WV44 630 aa21.29■■□□□ 1
USP40-210ENST00000454354 CLASP1Q7Z460 1538 aa21.29■■□□□ 1
USP40-210ENST00000454354 FBLN2P98095 1184 aa21.27■■□□□ 1
USP40-210ENST00000454354 ADAMTS12P58397 1594 aa21.23■□□□□ 0.99
USP40-210ENST00000454354 CHMP7Q8WUX9 453 aaPredicted RBP21.21■□□□□ 0.99
USP40-210ENST00000454354 ERICH3Q5RHP9 1530 aa21.19■□□□□ 0.98
USP40-210ENST00000454354 ARAP1Q96P48 1450 aa21.14■□□□□ 0.98
USP40-210ENST00000454354 GRIN2AQ12879 1464 aa21.13■□□□□ 0.97
USP40-210ENST00000454354 FHAD1B1AJZ9 1412 aa21.1■□□□□ 0.97
USP40-210ENST00000454354 CEP170Q5SW79 1584 aa21.07■□□□□ 0.96
USP40-210ENST00000454354 NUP160Q12769 1436 aa21.06■□□□□ 0.96
USP40-210ENST00000454354 SHROOM2Q13796 1616 aa21.01■□□□□ 0.95
USP40-210ENST00000454354 CYB5RLQ6IPT4 315 aa21.01■□□□□ 0.95
USP40-210ENST00000454354 CUL7Q14999 1698 aa20.98■□□□□ 0.95
USP40-210ENST00000454354 KIF27Q86VH2 1401 aa20.95■□□□□ 0.94
USP40-210ENST00000454354 RUSC2Q8N2Y8 1516 aa20.93■□□□□ 0.94
USP40-210ENST00000454354 ERCC6L2Q5T890 1561 aa20.93■□□□□ 0.94
USP40-210ENST00000454354 IGF1RP08069 1367 aa20.88■□□□□ 0.93
USP40-210ENST00000454354 KIAA0586Q9BVV6 1533 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms