RNA–Protein interactions for RNA: ENST00000453580.1

TNFRSF4-202, Transcript of TNF receptor superfamily member 4, humanhuman

TSL 3

Gene TNFRSF4, Length 393 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4-202ENST00000453580 NISCHQ9Y2I1 1504 aa42.09■■■■■ 4.33
TNFRSF4-202ENST00000453580 CCDC180Q9P1Z9 1646 aa37.73■■■■□ 3.63
TNFRSF4-202ENST00000453580 ABCC9O60706 1549 aa37.21■■■■□ 3.55
TNFRSF4-202ENST00000453580 RB1CC1Q8TDY2 1594 aa35.74■■■■□ 3.31
TNFRSF4-202ENST00000453580 NACADO15069 1562 aa35.58■■■■□ 3.29
TNFRSF4-202ENST00000453580 DCAF8L2P0C7V8 631 aa35.35■■■■□ 3.25
TNFRSF4-202ENST00000453580 MYO15BQ96JP2 1530 aa35.24■■■■□ 3.23
TNFRSF4-202ENST00000453580 ZCCHC6Q5VYS8 1495 aaKnown RBP34.94■■■■□ 3.18
TNFRSF4-202ENST00000453580 DCAF1Q9Y4B6 1507 aa34.88■■■■□ 3.17
TNFRSF4-202ENST00000453580 UNC13AQ9UPW8 1703 aa34.81■■■■□ 3.16
TNFRSF4-202ENST00000453580 PABPN1Q86U42 306 aaKnown RBP eCLIP34.65■■■■□ 3.14
TNFRSF4-202ENST00000453580 BICRAQ9NZM4 1560 aa34.51■■■■□ 3.12
TNFRSF4-202ENST00000453580 DNAJC5BQ9UF47 199 aa34.47■■■■□ 3.11
TNFRSF4-202ENST00000453580 SHROOM4Q9ULL8 1493 aa34.33■■■■□ 3.09
TNFRSF4-202ENST00000453580 SCRIBQ14160 1630 aa34.24■■■■□ 3.07
TNFRSF4-202ENST00000453580 EIF4G1Q04637 1599 aaKnown RBP33.71■■■□□ 2.99
TNFRSF4-202ENST00000453580 CC2D2AQ9P2K1 1620 aa33.68■■■□□ 2.98
TNFRSF4-202ENST00000453580 CECR2Q9BXF3 1484 aa33.55■■■□□ 2.96
TNFRSF4-202ENST00000453580 NCAPD3P42695 1498 aa32.79■■■□□ 2.84
TNFRSF4-202ENST00000453580 SMARCA4P51532 1647 aa32.76■■■□□ 2.83
TNFRSF4-202ENST00000453580 SMARCA2P51531 1590 aa32.73■■■□□ 2.83
TNFRSF4-202ENST00000453580 BAZ1AQ9NRL2 1556 aaPredicted RBP32.72■■■□□ 2.83
TNFRSF4-202ENST00000453580 ATAD2BQ9ULI0 1458 aa32.68■■■□□ 2.82
TNFRSF4-202ENST00000453580 HMGXB3Q12766 1538 aa32.61■■■□□ 2.81
TNFRSF4-202ENST00000453580 PEG3Q9GZU2 1588 aa32.49■■■□□ 2.79
TNFRSF4-202ENST00000453580 BAZ1BQ9UIG0 1483 aaKnown RBP32.44■■■□□ 2.78
TNFRSF4-202ENST00000453580 MROH2BQ7Z745 1585 aa32.35■■■□□ 2.77
TNFRSF4-202ENST00000453580 ERCC6Q03468 1493 aa32.22■■■□□ 2.75
TNFRSF4-202ENST00000453580 CUX2O14529 1486 aa32.08■■■□□ 2.73
TNFRSF4-202ENST00000453580 LAMC3Q9Y6N6 1575 aa32.04■■■□□ 2.72
TNFRSF4-202ENST00000453580 NESP48681 1621 aa32.01■■■□□ 2.72
TNFRSF4-202ENST00000453580 WIZO95785 1651 aa32■■■□□ 2.71
TNFRSF4-202ENST00000453580 PDS5BQ9NTI5 1447 aa31.86■■■□□ 2.69
TNFRSF4-202ENST00000453580 RSF1Q96T23 1441 aaPredicted RBP31.83■■■□□ 2.69
TNFRSF4-202ENST00000453580 CADPSQ9ULU8 1353 aa31.8■■■□□ 2.68
TNFRSF4-202ENST00000453580 KIF21AQ7Z4S6 1674 aa31.7■■■□□ 2.67
TNFRSF4-202ENST00000453580 THOC2Q8NI27 1593 aaKnown RBP31.7■■■□□ 2.67
TNFRSF4-202ENST00000453580 TOP2AP11388 1531 aaKnown RBP31.7■■■□□ 2.66
TNFRSF4-202ENST00000453580 DNAJC5Q9H3Z4 198 aa31.58■■■□□ 2.65
TNFRSF4-202ENST00000453580 CFTRP13569 1480 aa31.5■■■□□ 2.63
TNFRSF4-202ENST00000453580 MRC2Q9UBG0 1479 aa31.5■■■□□ 2.63
TNFRSF4-202ENST00000453580 CEP164Q9UPV0 1460 aa31.46■■■□□ 2.63
TNFRSF4-202ENST00000453580 FANCD2Q9BXW9 1451 aa31.42■■■□□ 2.62
TNFRSF4-202ENST00000453580 WDR62O43379 1518 aa31.39■■■□□ 2.62
TNFRSF4-202ENST00000453580 PRDM2Q13029 1718 aa31.31■■■□□ 2.6
TNFRSF4-202ENST00000453580 CCDC88BA6NC98 1476 aa31.28■■■□□ 2.6
TNFRSF4-202ENST00000453580 URB2Q14146 1524 aaKnown RBP31.07■■■□□ 2.56
TNFRSF4-202ENST00000453580 ABCC8Q09428 1581 aa30.97■■■□□ 2.55
TNFRSF4-202ENST00000453580 TOPBP1Q92547 1522 aa30.85■■■□□ 2.53
TNFRSF4-202ENST00000453580 IFT140Q96RY7 1462 aa30.83■■■□□ 2.53
TNFRSF4-202ENST00000453580 DNMBPQ6XZF7 1577 aa30.82■■■□□ 2.52
TNFRSF4-202ENST00000453580 SUPT5HO00267 1087 aaKnown RBP30.68■■■□□ 2.5
TNFRSF4-202ENST00000453580 OSCARQ8IYS5 282 aa30.66■■■□□ 2.5
TNFRSF4-202ENST00000453580 ZNF608Q9ULD9 1512 aaPredicted RBP30.6■■■□□ 2.49
TNFRSF4-202ENST00000453580 POLA1P09884 1462 aaPredicted RBP30.54■■■□□ 2.48
TNFRSF4-202ENST00000453580 TARBP1Q13395 1621 aaKnown RBP30.54■■■□□ 2.48
TNFRSF4-202ENST00000453580 EIF4G3O43432 1585 aaKnown RBP30.54■■■□□ 2.48
TNFRSF4-202ENST00000453580 SOGA1O94964 1423 aa30.46■■■□□ 2.47
TNFRSF4-202ENST00000453580 WDR97A6NE52 1622 aa30.43■■■□□ 2.46
TNFRSF4-202ENST00000453580 AQRO60306 1485 aaKnown RBP eCLIP30.4■■■□□ 2.46
TNFRSF4-202ENST00000453580 FGD5Q6ZNL6 1462 aa30.4■■■□□ 2.46
TNFRSF4-202ENST00000453580 CUX1P39880 1505 aa30.39■■■□□ 2.46
TNFRSF4-202ENST00000453580 RAD54L2Q9Y4B4 1467 aa30.36■■■□□ 2.45
TNFRSF4-202ENST00000453580 TRIM41Q8WV44 630 aa30.29■■■□□ 2.44
TNFRSF4-202ENST00000453580 TDRD9Q8NDG6 1382 aaKnown RBP30.28■■■□□ 2.44
TNFRSF4-202ENST00000453580 CHD1O14646 1710 aa30.25■■■□□ 2.43
TNFRSF4-202ENST00000453580 FBLN2P98095 1184 aa30.2■■■□□ 2.43
TNFRSF4-202ENST00000453580 GRIN2BQ13224 1484 aa30.18■■■□□ 2.42
TNFRSF4-202ENST00000453580 MAGI1Q96QZ7 1491 aaPredicted RBP30.17■■■□□ 2.42
TNFRSF4-202ENST00000453580 RIMBP3CA6NJZ7 1639 aa30.14■■■□□ 2.41
TNFRSF4-202ENST00000453580 RIMBP3BA6NNM3 1639 aa30.14■■■□□ 2.41
TNFRSF4-202ENST00000453580 RIMBP3Q9UFD9 1639 aa30.14■■■□□ 2.41
TNFRSF4-202ENST00000453580 SNAPC4Q5SXM2 1469 aa30.12■■■□□ 2.41
TNFRSF4-202ENST00000453580 ABCA10Q8WWZ4 1543 aa30.12■■■□□ 2.41
TNFRSF4-202ENST00000453580 WRNQ14191 1432 aaPredicted RBP eCLIP30.12■■■□□ 2.41
TNFRSF4-202ENST00000453580 GAPVD1Q14C86 1478 aa30.09■■■□□ 2.41
TNFRSF4-202ENST00000453580 BIVM-ERCC5R4GMW8 1640 aa30.09■■■□□ 2.41
TNFRSF4-202ENST00000453580 TOP2BQ02880 1626 aa30.08■■■□□ 2.41
TNFRSF4-202ENST00000453580 ARHGEF11O15085 1522 aa30.08■■■□□ 2.41
TNFRSF4-202ENST00000453580 CHMP7Q8WUX9 453 aaPredicted RBP30.08■■■□□ 2.41
TNFRSF4-202ENST00000453580 PBRM1Q86U86 1689 aa30.06■■■□□ 2.4
TNFRSF4-202ENST00000453580 SYNJ2O15056 1496 aa30.04■■■□□ 2.4
TNFRSF4-202ENST00000453580 ABCA5Q8WWZ7 1642 aa30.02■■■□□ 2.4
TNFRSF4-202ENST00000453580 SYNJ1O43426 1573 aa30.02■■■□□ 2.4
TNFRSF4-202ENST00000453580 CLASP1Q7Z460 1538 aa29.9■■■□□ 2.38
TNFRSF4-202ENST00000453580 CYB5RLQ6IPT4 315 aa29.84■■■□□ 2.37
TNFRSF4-202ENST00000453580 ERICH3Q5RHP9 1530 aa29.8■■■□□ 2.36
TNFRSF4-202ENST00000453580 ARAP1Q96P48 1450 aa29.77■■■□□ 2.36
TNFRSF4-202ENST00000453580 ADAMTS12P58397 1594 aa29.77■■■□□ 2.36
TNFRSF4-202ENST00000453580 GRIN2AQ12879 1464 aa29.75■■■□□ 2.35
TNFRSF4-202ENST00000453580 FHAD1B1AJZ9 1412 aa29.75■■■□□ 2.35
TNFRSF4-202ENST00000453580 NUP160Q12769 1436 aa29.63■■■□□ 2.33
TNFRSF4-202ENST00000453580 CEP170Q5SW79 1584 aa29.57■■■□□ 2.32
TNFRSF4-202ENST00000453580 KIF27Q86VH2 1401 aa29.55■■■□□ 2.32
TNFRSF4-202ENST00000453580 SHROOM2Q13796 1616 aa29.48■■■□□ 2.31
TNFRSF4-202ENST00000453580 CUL7Q14999 1698 aa29.47■■■□□ 2.31
TNFRSF4-202ENST00000453580 TRHP20396 242 aaPredicted RBP29.44■■■□□ 2.3
TNFRSF4-202ENST00000453580 IGF1RP08069 1367 aa29.4■■■□□ 2.3
TNFRSF4-202ENST00000453580 JPH4Q96JJ6 628 aa29.35■■■□□ 2.29
TNFRSF4-202ENST00000453580 RUSC2Q8N2Y8 1516 aa29.34■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms