RNA–Protein interactions for RNA: ENST00000453536.5

RFTN1-207, Transcript of raftlin, lipid raft linker 1, humanhuman

TSL 5

Gene RFTN1, Length 577 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFTN1-207ENST00000453536 NISCHQ9Y2I1 1504 aa35.12■■■■□ 3.21
RFTN1-207ENST00000453536 CCDC180Q9P1Z9 1646 aa31.37■■■□□ 2.61
RFTN1-207ENST00000453536 ABCC9O60706 1549 aa31.2■■■□□ 2.59
RFTN1-207ENST00000453536 RB1CC1Q8TDY2 1594 aa29.66■■■□□ 2.34
RFTN1-207ENST00000453536 DCAF8L2P0C7V8 631 aa29.53■■■□□ 2.32
RFTN1-207ENST00000453536 NACADO15069 1562 aa29.49■■■□□ 2.31
RFTN1-207ENST00000453536 UNC13AQ9UPW8 1703 aa29.31■■■□□ 2.28
RFTN1-207ENST00000453536 ZCCHC6Q5VYS8 1495 aaKnown RBP29.2■■■□□ 2.26
RFTN1-207ENST00000453536 MYO15BQ96JP2 1530 aa29.1■■■□□ 2.25
RFTN1-207ENST00000453536 PABPN1Q86U42 306 aaKnown RBP eCLIP29.09■■■□□ 2.25
RFTN1-207ENST00000453536 DNAJC5BQ9UF47 199 aa29.04■■■□□ 2.24
RFTN1-207ENST00000453536 BICRAQ9NZM4 1560 aa28.98■■■□□ 2.23
RFTN1-207ENST00000453536 DCAF1Q9Y4B6 1507 aa28.89■■■□□ 2.22
RFTN1-207ENST00000453536 SCRIBQ14160 1630 aa28.79■■■□□ 2.2
RFTN1-207ENST00000453536 SHROOM4Q9ULL8 1493 aa28.26■■■□□ 2.11
RFTN1-207ENST00000453536 CC2D2AQ9P2K1 1620 aa28.18■■■□□ 2.1
RFTN1-207ENST00000453536 EIF4G1Q04637 1599 aaKnown RBP28.16■■■□□ 2.1
RFTN1-207ENST00000453536 CECR2Q9BXF3 1484 aa27.97■■■□□ 2.07
RFTN1-207ENST00000453536 SMARCA4P51532 1647 aa27.4■■□□□ 1.98
RFTN1-207ENST00000453536 ATAD2BQ9ULI0 1458 aa27.28■■□□□ 1.96
RFTN1-207ENST00000453536 NCAPD3P42695 1498 aa27.22■■□□□ 1.95
RFTN1-207ENST00000453536 MROH2BQ7Z745 1585 aa27.18■■□□□ 1.94
RFTN1-207ENST00000453536 BAZ1AQ9NRL2 1556 aaPredicted RBP27.18■■□□□ 1.94
RFTN1-207ENST00000453536 SMARCA2P51531 1590 aa27.14■■□□□ 1.93
RFTN1-207ENST00000453536 HMGXB3Q12766 1538 aa27.1■■□□□ 1.93
RFTN1-207ENST00000453536 PEG3Q9GZU2 1588 aa27.02■■□□□ 1.92
RFTN1-207ENST00000453536 BAZ1BQ9UIG0 1483 aaKnown RBP27.01■■□□□ 1.91
RFTN1-207ENST00000453536 NESP48681 1621 aa26.96■■□□□ 1.91
RFTN1-207ENST00000453536 WIZO95785 1651 aa26.94■■□□□ 1.9
RFTN1-207ENST00000453536 ERCC6Q03468 1493 aa26.78■■□□□ 1.88
RFTN1-207ENST00000453536 KIF21AQ7Z4S6 1674 aa26.65■■□□□ 1.86
RFTN1-207ENST00000453536 RSF1Q96T23 1441 aaPredicted RBP26.64■■□□□ 1.85
RFTN1-207ENST00000453536 LAMC3Q9Y6N6 1575 aa26.59■■□□□ 1.85
RFTN1-207ENST00000453536 THOC2Q8NI27 1593 aaKnown RBP26.58■■□□□ 1.85
RFTN1-207ENST00000453536 CUX2O14529 1486 aa26.55■■□□□ 1.84
RFTN1-207ENST00000453536 TOP2AP11388 1531 aaKnown RBP26.46■■□□□ 1.83
RFTN1-207ENST00000453536 CADPSQ9ULU8 1353 aa26.42■■□□□ 1.82
RFTN1-207ENST00000453536 PDS5BQ9NTI5 1447 aa26.34■■□□□ 1.81
RFTN1-207ENST00000453536 CFTRP13569 1480 aa26.22■■□□□ 1.79
RFTN1-207ENST00000453536 MRC2Q9UBG0 1479 aa26.22■■□□□ 1.79
RFTN1-207ENST00000453536 FANCD2Q9BXW9 1451 aa26.2■■□□□ 1.78
RFTN1-207ENST00000453536 DNAJC5Q9H3Z4 198 aa26.2■■□□□ 1.78
RFTN1-207ENST00000453536 CCDC88BA6NC98 1476 aa26.19■■□□□ 1.78
RFTN1-207ENST00000453536 WDR62O43379 1518 aa26.18■■□□□ 1.78
RFTN1-207ENST00000453536 CEP164Q9UPV0 1460 aa26.17■■□□□ 1.78
RFTN1-207ENST00000453536 PRDM2Q13029 1718 aa26.14■■□□□ 1.77
RFTN1-207ENST00000453536 URB2Q14146 1524 aaKnown RBP26.06■■□□□ 1.76
RFTN1-207ENST00000453536 TOPBP1Q92547 1522 aa25.78■■□□□ 1.72
RFTN1-207ENST00000453536 SUPT5HO00267 1087 aaKnown RBP25.74■■□□□ 1.71
RFTN1-207ENST00000453536 ZNF608Q9ULD9 1512 aaPredicted RBP25.72■■□□□ 1.71
RFTN1-207ENST00000453536 DNMBPQ6XZF7 1577 aa25.69■■□□□ 1.7
RFTN1-207ENST00000453536 IFT140Q96RY7 1462 aa25.59■■□□□ 1.69
RFTN1-207ENST00000453536 EIF4G3O43432 1585 aaKnown RBP25.58■■□□□ 1.69
RFTN1-207ENST00000453536 TARBP1Q13395 1621 aaKnown RBP25.57■■□□□ 1.68
RFTN1-207ENST00000453536 POLA1P09884 1462 aaPredicted RBP25.53■■□□□ 1.68
RFTN1-207ENST00000453536 RAD54L2Q9Y4B4 1467 aa25.52■■□□□ 1.68
RFTN1-207ENST00000453536 CUX1P39880 1505 aa25.51■■□□□ 1.67
RFTN1-207ENST00000453536 ABCC8Q09428 1581 aa25.5■■□□□ 1.67
RFTN1-207ENST00000453536 AQRO60306 1485 aaKnown RBP eCLIP25.47■■□□□ 1.67
RFTN1-207ENST00000453536 FGD5Q6ZNL6 1462 aa25.44■■□□□ 1.66
RFTN1-207ENST00000453536 CHD1O14646 1710 aa25.4■■□□□ 1.66
RFTN1-207ENST00000453536 TDRD9Q8NDG6 1382 aaKnown RBP25.34■■□□□ 1.65
RFTN1-207ENST00000453536 OSCARQ8IYS5 282 aa25.34■■□□□ 1.65
RFTN1-207ENST00000453536 SOGA1O94964 1423 aa25.34■■□□□ 1.65
RFTN1-207ENST00000453536 TRIM41Q8WV44 630 aa25.33■■□□□ 1.65
RFTN1-207ENST00000453536 WDR97A6NE52 1622 aa25.33■■□□□ 1.65
RFTN1-207ENST00000453536 RIMBP3CA6NJZ7 1639 aa25.24■■□□□ 1.63
RFTN1-207ENST00000453536 RIMBP3BA6NNM3 1639 aa25.24■■□□□ 1.63
RFTN1-207ENST00000453536 RIMBP3Q9UFD9 1639 aa25.24■■□□□ 1.63
RFTN1-207ENST00000453536 SYNJ1O43426 1573 aa25.22■■□□□ 1.63
RFTN1-207ENST00000453536 SNAPC4Q5SXM2 1469 aa25.21■■□□□ 1.63
RFTN1-207ENST00000453536 PBRM1Q86U86 1689 aa25.2■■□□□ 1.62
RFTN1-207ENST00000453536 FBLN2P98095 1184 aa25.16■■□□□ 1.62
RFTN1-207ENST00000453536 BIVM-ERCC5R4GMW8 1640 aa25.15■■□□□ 1.62
RFTN1-207ENST00000453536 ARHGEF11O15085 1522 aa25.12■■□□□ 1.61
RFTN1-207ENST00000453536 ABCA5Q8WWZ7 1642 aa25.12■■□□□ 1.61
RFTN1-207ENST00000453536 TOP2BQ02880 1626 aa25.12■■□□□ 1.61
RFTN1-207ENST00000453536 ABCA10Q8WWZ4 1543 aa25.08■■□□□ 1.61
RFTN1-207ENST00000453536 WRNQ14191 1432 aaPredicted RBP eCLIP25.08■■□□□ 1.61
RFTN1-207ENST00000453536 GRIN2BQ13224 1484 aa25.07■■□□□ 1.6
RFTN1-207ENST00000453536 GAPVD1Q14C86 1478 aa25.06■■□□□ 1.6
RFTN1-207ENST00000453536 MAGI1Q96QZ7 1491 aaPredicted RBP25.02■■□□□ 1.6
RFTN1-207ENST00000453536 CLASP1Q7Z460 1538 aa25■■□□□ 1.59
RFTN1-207ENST00000453536 SYNJ2O15056 1496 aa24.96■■□□□ 1.59
RFTN1-207ENST00000453536 ARAP1Q96P48 1450 aa24.94■■□□□ 1.58
RFTN1-207ENST00000453536 CHMP7Q8WUX9 453 aaPredicted RBP24.93■■□□□ 1.58
RFTN1-207ENST00000453536 ADAMTS12P58397 1594 aa24.92■■□□□ 1.58
RFTN1-207ENST00000453536 CYB5RLQ6IPT4 315 aa24.86■■□□□ 1.57
RFTN1-207ENST00000453536 CEP170Q5SW79 1584 aa24.82■■□□□ 1.56
RFTN1-207ENST00000453536 GRIN2AQ12879 1464 aa24.81■■□□□ 1.56
RFTN1-207ENST00000453536 ERCC6L2Q5T890 1561 aa24.8■■□□□ 1.56
RFTN1-207ENST00000453536 ERICH3Q5RHP9 1530 aa24.74■■□□□ 1.55
RFTN1-207ENST00000453536 FHAD1B1AJZ9 1412 aa24.7■■□□□ 1.55
RFTN1-207ENST00000453536 NUP160Q12769 1436 aa24.69■■□□□ 1.54
RFTN1-207ENST00000453536 SHROOM2Q13796 1616 aa24.61■■□□□ 1.53
RFTN1-207ENST00000453536 RUSC2Q8N2Y8 1516 aa24.56■■□□□ 1.52
RFTN1-207ENST00000453536 IGF1RP08069 1367 aa24.53■■□□□ 1.52
RFTN1-207ENST00000453536 KIF27Q86VH2 1401 aa24.51■■□□□ 1.51
RFTN1-207ENST00000453536 CUL7Q14999 1698 aa24.49■■□□□ 1.51
RFTN1-207ENST00000453536 TRHP20396 242 aaPredicted RBP24.46■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms