RNA–Protein interactions for RNA: ENST00000453337.1

HLA-DPA1-244, Transcript of major histocompatibility complex, class II, DP alpha 1, humanhuman

APPRIS ALT2

Gene HLA-DPA1, Length 918 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1-244ENST00000453337 NISCHQ9Y2I1 1504 aa29■■■□□ 2.23
HLA-DPA1-244ENST00000453337 CCDC180Q9P1Z9 1646 aa25.49■■□□□ 1.67
HLA-DPA1-244ENST00000453337 ABCC9O60706 1549 aa24.33■■□□□ 1.49
HLA-DPA1-244ENST00000453337 ZCCHC6Q5VYS8 1495 aaKnown RBP24.26■■□□□ 1.47
HLA-DPA1-244ENST00000453337 DCAF8L2P0C7V8 631 aa24.1■■□□□ 1.45
HLA-DPA1-244ENST00000453337 DCAF1Q9Y4B6 1507 aa24.04■■□□□ 1.44
HLA-DPA1-244ENST00000453337 MYO15BQ96JP2 1530 aa23.89■■□□□ 1.42
HLA-DPA1-244ENST00000453337 NACADO15069 1562 aa23.85■■□□□ 1.41
HLA-DPA1-244ENST00000453337 RB1CC1Q8TDY2 1594 aa23.7■■□□□ 1.38
HLA-DPA1-244ENST00000453337 SHROOM4Q9ULL8 1493 aa23.33■■□□□ 1.33
HLA-DPA1-244ENST00000453337 SCRIBQ14160 1630 aa23.3■■□□□ 1.32
HLA-DPA1-244ENST00000453337 UNC13AQ9UPW8 1703 aa23.17■■□□□ 1.3
HLA-DPA1-244ENST00000453337 BICRAQ9NZM4 1560 aa22.92■■□□□ 1.26
HLA-DPA1-244ENST00000453337 PABPN1Q86U42 306 aaKnown RBP eCLIP22.89■■□□□ 1.25
HLA-DPA1-244ENST00000453337 CECR2Q9BXF3 1484 aa22.51■■□□□ 1.19
HLA-DPA1-244ENST00000453337 BAZ1AQ9NRL2 1556 aaPredicted RBP22.44■■□□□ 1.18
HLA-DPA1-244ENST00000453337 SMARCA4P51532 1647 aa22.35■■□□□ 1.17
HLA-DPA1-244ENST00000453337 MROH2BQ7Z745 1585 aa22.35■■□□□ 1.17
HLA-DPA1-244ENST00000453337 RSF1Q96T23 1441 aaPredicted RBP22.35■■□□□ 1.17
HLA-DPA1-244ENST00000453337 SUPT5HO00267 1087 aaKnown RBP22.35■■□□□ 1.17
HLA-DPA1-244ENST00000453337 EIF4G1Q04637 1599 aaKnown RBP22.27■■□□□ 1.16
HLA-DPA1-244ENST00000453337 WIZO95785 1651 aa22.16■■□□□ 1.14
HLA-DPA1-244ENST00000453337 PEG3Q9GZU2 1588 aa22.12■■□□□ 1.13
HLA-DPA1-244ENST00000453337 SMARCA2P51531 1590 aa22.11■■□□□ 1.13
HLA-DPA1-244ENST00000453337 ATAD2BQ9ULI0 1458 aa22.08■■□□□ 1.12
HLA-DPA1-244ENST00000453337 CC2D2AQ9P2K1 1620 aa22.03■■□□□ 1.12
HLA-DPA1-244ENST00000453337 NCAPD3P42695 1498 aa21.99■■□□□ 1.11
HLA-DPA1-244ENST00000453337 BAZ1BQ9UIG0 1483 aaKnown RBP21.95■■□□□ 1.1
HLA-DPA1-244ENST00000453337 TOP2AP11388 1531 aaKnown RBP21.94■■□□□ 1.1
HLA-DPA1-244ENST00000453337 HMGXB3Q12766 1538 aa21.9■■□□□ 1.1
HLA-DPA1-244ENST00000453337 DNAJC5BQ9UF47 199 aa21.76■■□□□ 1.07
HLA-DPA1-244ENST00000453337 CCDC88BA6NC98 1476 aa21.71■■□□□ 1.07
HLA-DPA1-244ENST00000453337 CADPSQ9ULU8 1353 aa21.4■■□□□ 1.02
HLA-DPA1-244ENST00000453337 CFTRP13569 1480 aa21.38■■□□□ 1.01
HLA-DPA1-244ENST00000453337 LAMC3Q9Y6N6 1575 aa21.31■■□□□ 1
HLA-DPA1-244ENST00000453337 PRDM2Q13029 1718 aa21.29■■□□□ 1
HLA-DPA1-244ENST00000453337 CHIC1Q5VXU3 224 aa21.24■□□□□ 0.99
HLA-DPA1-244ENST00000453337 NESP48681 1621 aa21.23■□□□□ 0.99
HLA-DPA1-244ENST00000453337 PDS5BQ9NTI5 1447 aa21.17■□□□□ 0.98
HLA-DPA1-244ENST00000453337 FANCD2Q9BXW9 1451 aa21.13■□□□□ 0.97
HLA-DPA1-244ENST00000453337 TRIM41Q8WV44 630 aa21.1■□□□□ 0.97
HLA-DPA1-244ENST00000453337 ABCC8Q09428 1581 aa21.08■□□□□ 0.97
HLA-DPA1-244ENST00000453337 WRNQ14191 1432 aaPredicted RBP eCLIP21.07■□□□□ 0.96
HLA-DPA1-244ENST00000453337 CEP164Q9UPV0 1460 aa21.04■□□□□ 0.96
HLA-DPA1-244ENST00000453337 KIF21AQ7Z4S6 1674 aa21.01■□□□□ 0.95
HLA-DPA1-244ENST00000453337 ERCC6Q03468 1493 aa20.94■□□□□ 0.94
HLA-DPA1-244ENST00000453337 SYNJ1O43426 1573 aa20.93■□□□□ 0.94
HLA-DPA1-244ENST00000453337 TOP2BQ02880 1626 aa20.93■□□□□ 0.94
HLA-DPA1-244ENST00000453337 CUX1P39880 1505 aa20.93■□□□□ 0.94
HLA-DPA1-244ENST00000453337 BIVM-ERCC5R4GMW8 1640 aa20.93■□□□□ 0.94
HLA-DPA1-244ENST00000453337 DNMBPQ6XZF7 1577 aa20.89■□□□□ 0.93
HLA-DPA1-244ENST00000453337 TOPBP1Q92547 1522 aa20.86■□□□□ 0.93
HLA-DPA1-244ENST00000453337 MRC2Q9UBG0 1479 aa20.86■□□□□ 0.93
HLA-DPA1-244ENST00000453337 URB2Q14146 1524 aaKnown RBP20.85■□□□□ 0.93
HLA-DPA1-244ENST00000453337 FGD5Q6ZNL6 1462 aa20.76■□□□□ 0.91
HLA-DPA1-244ENST00000453337 WDR62O43379 1518 aa20.75■□□□□ 0.91
HLA-DPA1-244ENST00000453337 THOC2Q8NI27 1593 aaKnown RBP20.73■□□□□ 0.91
HLA-DPA1-244ENST00000453337 POLA1P09884 1462 aaPredicted RBP20.71■□□□□ 0.91
HLA-DPA1-244ENST00000453337 SOGA1O94964 1423 aa20.7■□□□□ 0.9
HLA-DPA1-244ENST00000453337 EEA1Q15075 1411 aa20.65■□□□□ 0.9
HLA-DPA1-244ENST00000453337 FAM9AQ8IZU1 332 aaPredicted RBP20.63■□□□□ 0.89
HLA-DPA1-244ENST00000453337 RAD54L2Q9Y4B4 1467 aa20.62■□□□□ 0.89
HLA-DPA1-244ENST00000453337 KIF27Q86VH2 1401 aa20.61■□□□□ 0.89
HLA-DPA1-244ENST00000453337 ABCA10Q8WWZ4 1543 aa20.6■□□□□ 0.89
HLA-DPA1-244ENST00000453337 CUX2O14529 1486 aa20.59■□□□□ 0.89
HLA-DPA1-244ENST00000453337 IFT140Q96RY7 1462 aa20.58■□□□□ 0.89
HLA-DPA1-244ENST00000453337 RUSC2Q8N2Y8 1516 aa20.58■□□□□ 0.88
HLA-DPA1-244ENST00000453337 CSRNP3Q8WYN3 585 aa20.57■□□□□ 0.88
HLA-DPA1-244ENST00000453337 TARBP1Q13395 1621 aaKnown RBP20.56■□□□□ 0.88
HLA-DPA1-244ENST00000453337 WDR97A6NE52 1622 aa20.53■□□□□ 0.88
HLA-DPA1-244ENST00000453337 TDRD9Q8NDG6 1382 aaKnown RBP20.48■□□□□ 0.87
HLA-DPA1-244ENST00000453337 GAPVD1Q14C86 1478 aa20.45■□□□□ 0.86
HLA-DPA1-244ENST00000453337 IGF1RP08069 1367 aa20.44■□□□□ 0.86
HLA-DPA1-244ENST00000453337 ABCA5Q8WWZ7 1642 aa20.43■□□□□ 0.86
HLA-DPA1-244ENST00000453337 AQRO60306 1485 aaKnown RBP eCLIP20.4■□□□□ 0.86
HLA-DPA1-244ENST00000453337 ZNF608Q9ULD9 1512 aaPredicted RBP20.39■□□□□ 0.85
HLA-DPA1-244ENST00000453337 LOC105371045A0A1W2PR82 267 aa20.39■□□□□ 0.85
HLA-DPA1-244ENST00000453337 ERICH3Q5RHP9 1530 aa20.37■□□□□ 0.85
HLA-DPA1-244ENST00000453337 GRIN2BQ13224 1484 aa20.35■□□□□ 0.85
HLA-DPA1-244ENST00000453337 CARMIL1Q5VZK9 1371 aa20.34■□□□□ 0.85
HLA-DPA1-244ENST00000453337 PBRM1Q86U86 1689 aa20.34■□□□□ 0.85
HLA-DPA1-244ENST00000453337 KIF21BO75037 1637 aa20.34■□□□□ 0.85
HLA-DPA1-244ENST00000453337 PRXQ9BXM0 1461 aa20.33■□□□□ 0.85
HLA-DPA1-244ENST00000453337 EIF4G3O43432 1585 aaKnown RBP20.33■□□□□ 0.84
HLA-DPA1-244ENST00000453337 CUL7Q14999 1698 aa20.32■□□□□ 0.84
HLA-DPA1-244ENST00000453337 EHMT2Q96KQ7 1210 aa20.29■□□□□ 0.84
HLA-DPA1-244ENST00000453337 GOLGA3Q08378 1498 aa20.29■□□□□ 0.84
HLA-DPA1-244ENST00000453337 RAPGEF2Q9Y4G8 1499 aa20.27■□□□□ 0.84
HLA-DPA1-244ENST00000453337 UBTFP17480 764 aaKnown RBP20.27■□□□□ 0.84
HLA-DPA1-244ENST00000453337 FHAD1B1AJZ9 1412 aa20.24■□□□□ 0.83
HLA-DPA1-244ENST00000453337 MAGI1Q96QZ7 1491 aaPredicted RBP20.23■□□□□ 0.83
HLA-DPA1-244ENST00000453337 SNAPC4Q5SXM2 1469 aa20.2■□□□□ 0.82
HLA-DPA1-244ENST00000453337 TNIKQ9UKE5 1360 aa20.2■□□□□ 0.82
HLA-DPA1-244ENST00000453337 ADAMTS12P58397 1594 aa20.18■□□□□ 0.82
HLA-DPA1-244ENST00000453337 CHMP7Q8WUX9 453 aaPredicted RBP20.15■□□□□ 0.82
HLA-DPA1-244ENST00000453337 SYNJ2O15056 1496 aa20.13■□□□□ 0.81
HLA-DPA1-244ENST00000453337 FBLN2P98095 1184 aa20.1■□□□□ 0.81
HLA-DPA1-244ENST00000453337 GRIN2AQ12879 1464 aa20.07■□□□□ 0.8
HLA-DPA1-244ENST00000453337 CTTNBP2Q8WZ74 1663 aa20.03■□□□□ 0.8
HLA-DPA1-244ENST00000453337 CEP162Q5TB80 1403 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms