RNA–Protein interactions for RNA: ENST00000453260.6

TNFRSF25-207, Transcript of TNF receptor superfamily member 25, humanhuman

TSL 2

Gene TNFRSF25, Length 984 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF25-207ENST00000453260 NISCHQ9Y2I1 1504 aa45.65■■■■■ 4.9
TNFRSF25-207ENST00000453260 CCDC180Q9P1Z9 1646 aa40.89■■■■■ 4.14
TNFRSF25-207ENST00000453260 ABCC9O60706 1549 aa40.74■■■■■ 4.11
TNFRSF25-207ENST00000453260 RB1CC1Q8TDY2 1594 aa38.9■■■■□ 3.82
TNFRSF25-207ENST00000453260 NACADO15069 1562 aa38.67■■■■□ 3.78
TNFRSF25-207ENST00000453260 DCAF8L2P0C7V8 631 aa38.6■■■■□ 3.77
TNFRSF25-207ENST00000453260 MYO15BQ96JP2 1530 aa38.17■■■■□ 3.7
TNFRSF25-207ENST00000453260 DNAJC5BQ9UF47 199 aa38.06■■■■□ 3.68
TNFRSF25-207ENST00000453260 PABPN1Q86U42 306 aaKnown RBP eCLIP37.99■■■■□ 3.67
TNFRSF25-207ENST00000453260 UNC13AQ9UPW8 1703 aa37.93■■■■□ 3.66
TNFRSF25-207ENST00000453260 ZCCHC6Q5VYS8 1495 aaKnown RBP37.83■■■■□ 3.65
TNFRSF25-207ENST00000453260 DCAF1Q9Y4B6 1507 aa37.73■■■■□ 3.63
TNFRSF25-207ENST00000453260 BICRAQ9NZM4 1560 aa37.66■■■■□ 3.62
TNFRSF25-207ENST00000453260 SHROOM4Q9ULL8 1493 aa37.26■■■■□ 3.56
TNFRSF25-207ENST00000453260 SCRIBQ14160 1630 aa37.25■■■■□ 3.55
TNFRSF25-207ENST00000453260 CC2D2AQ9P2K1 1620 aa36.81■■■■□ 3.48
TNFRSF25-207ENST00000453260 EIF4G1Q04637 1599 aaKnown RBP36.77■■■■□ 3.48
TNFRSF25-207ENST00000453260 CECR2Q9BXF3 1484 aa36.71■■■■□ 3.47
TNFRSF25-207ENST00000453260 NCAPD3P42695 1498 aa35.68■■■■□ 3.3
TNFRSF25-207ENST00000453260 ATAD2BQ9ULI0 1458 aa35.57■■■■□ 3.28
TNFRSF25-207ENST00000453260 SMARCA4P51532 1647 aa35.56■■■■□ 3.28
TNFRSF25-207ENST00000453260 SMARCA2P51531 1590 aa35.53■■■■□ 3.28
TNFRSF25-207ENST00000453260 BAZ1AQ9NRL2 1556 aaPredicted RBP35.45■■■■□ 3.27
TNFRSF25-207ENST00000453260 HMGXB3Q12766 1538 aa35.41■■■■□ 3.26
TNFRSF25-207ENST00000453260 BAZ1BQ9UIG0 1483 aaKnown RBP35.27■■■■□ 3.24
TNFRSF25-207ENST00000453260 ERCC6Q03468 1493 aa35.23■■■■□ 3.23
TNFRSF25-207ENST00000453260 PEG3Q9GZU2 1588 aa35.21■■■■□ 3.23
TNFRSF25-207ENST00000453260 MROH2BQ7Z745 1585 aa35.14■■■■□ 3.22
TNFRSF25-207ENST00000453260 CUX2O14529 1486 aa35.09■■■■□ 3.21
TNFRSF25-207ENST00000453260 NESP48681 1621 aa35.02■■■■□ 3.2
TNFRSF25-207ENST00000453260 DNAJC5Q9H3Z4 198 aa34.94■■■■□ 3.18
TNFRSF25-207ENST00000453260 LAMC3Q9Y6N6 1575 aa34.86■■■■□ 3.17
TNFRSF25-207ENST00000453260 WIZO95785 1651 aa34.73■■■■□ 3.15
TNFRSF25-207ENST00000453260 PDS5BQ9NTI5 1447 aa34.71■■■■□ 3.15
TNFRSF25-207ENST00000453260 CADPSQ9ULU8 1353 aa34.62■■■■□ 3.13
TNFRSF25-207ENST00000453260 THOC2Q8NI27 1593 aaKnown RBP34.61■■■■□ 3.13
TNFRSF25-207ENST00000453260 KIF21AQ7Z4S6 1674 aa34.57■■■■□ 3.13
TNFRSF25-207ENST00000453260 RSF1Q96T23 1441 aaPredicted RBP34.5■■■■□ 3.11
TNFRSF25-207ENST00000453260 MRC2Q9UBG0 1479 aa34.33■■■■□ 3.09
TNFRSF25-207ENST00000453260 TOP2AP11388 1531 aaKnown RBP34.32■■■■□ 3.08
TNFRSF25-207ENST00000453260 CEP164Q9UPV0 1460 aa34.24■■■■□ 3.07
TNFRSF25-207ENST00000453260 CFTRP13569 1480 aa34.23■■■■□ 3.07
TNFRSF25-207ENST00000453260 WDR62O43379 1518 aa34.21■■■■□ 3.07
TNFRSF25-207ENST00000453260 FANCD2Q9BXW9 1451 aa34.2■■■■□ 3.07
TNFRSF25-207ENST00000453260 CCDC88BA6NC98 1476 aa33.95■■■■□ 3.02
TNFRSF25-207ENST00000453260 PRDM2Q13029 1718 aa33.9■■■■□ 3.02
TNFRSF25-207ENST00000453260 URB2Q14146 1524 aaKnown RBP33.87■■■■□ 3.01
TNFRSF25-207ENST00000453260 OSCARQ8IYS5 282 aa33.61■■■□□ 2.97
TNFRSF25-207ENST00000453260 ABCC8Q09428 1581 aa33.6■■■□□ 2.97
TNFRSF25-207ENST00000453260 IFT140Q96RY7 1462 aa33.56■■■□□ 2.96
TNFRSF25-207ENST00000453260 TOPBP1Q92547 1522 aa33.56■■■□□ 2.96
TNFRSF25-207ENST00000453260 TRIM41Q8WV44 630 aa33.47■■■□□ 2.95
TNFRSF25-207ENST00000453260 DNMBPQ6XZF7 1577 aa33.46■■■□□ 2.95
TNFRSF25-207ENST00000453260 ZNF608Q9ULD9 1512 aaPredicted RBP33.43■■■□□ 2.94
TNFRSF25-207ENST00000453260 EIF4G3O43432 1585 aaKnown RBP33.25■■■□□ 2.91
TNFRSF25-207ENST00000453260 TARBP1Q13395 1621 aaKnown RBP33.23■■■□□ 2.91
TNFRSF25-207ENST00000453260 POLA1P09884 1462 aaPredicted RBP33.22■■■□□ 2.91
TNFRSF25-207ENST00000453260 AQRO60306 1485 aaKnown RBP eCLIP33.18■■■□□ 2.9
TNFRSF25-207ENST00000453260 SUPT5HO00267 1087 aaKnown RBP33.18■■■□□ 2.9
TNFRSF25-207ENST00000453260 SOGA1O94964 1423 aa33.14■■■□□ 2.9
TNFRSF25-207ENST00000453260 RAD54L2Q9Y4B4 1467 aa33.09■■■□□ 2.89
TNFRSF25-207ENST00000453260 FBLN2P98095 1184 aa33.04■■■□□ 2.88
TNFRSF25-207ENST00000453260 FGD5Q6ZNL6 1462 aa33.04■■■□□ 2.88
TNFRSF25-207ENST00000453260 TDRD9Q8NDG6 1382 aaKnown RBP33.03■■■□□ 2.88
TNFRSF25-207ENST00000453260 RIMBP3CA6NJZ7 1639 aa33.02■■■□□ 2.88
TNFRSF25-207ENST00000453260 RIMBP3BA6NNM3 1639 aa33.02■■■□□ 2.88
TNFRSF25-207ENST00000453260 RIMBP3Q9UFD9 1639 aa33.02■■■□□ 2.88
TNFRSF25-207ENST00000453260 CUX1P39880 1505 aa33.01■■■□□ 2.87
TNFRSF25-207ENST00000453260 CHD1O14646 1710 aa32.99■■■□□ 2.87
TNFRSF25-207ENST00000453260 WDR97A6NE52 1622 aa32.96■■■□□ 2.87
TNFRSF25-207ENST00000453260 ARHGEF11O15085 1522 aa32.94■■■□□ 2.86
TNFRSF25-207ENST00000453260 SNAPC4Q5SXM2 1469 aa32.83■■■□□ 2.85
TNFRSF25-207ENST00000453260 CHMP7Q8WUX9 453 aaPredicted RBP32.83■■■□□ 2.85
TNFRSF25-207ENST00000453260 GRIN2BQ13224 1484 aa32.81■■■□□ 2.84
TNFRSF25-207ENST00000453260 MAGI1Q96QZ7 1491 aaPredicted RBP32.8■■■□□ 2.84
TNFRSF25-207ENST00000453260 CYB5RLQ6IPT4 315 aa32.78■■■□□ 2.84
TNFRSF25-207ENST00000453260 GAPVD1Q14C86 1478 aa32.72■■■□□ 2.83
TNFRSF25-207ENST00000453260 ABCA10Q8WWZ4 1543 aa32.69■■■□□ 2.82
TNFRSF25-207ENST00000453260 SYNJ2O15056 1496 aa32.68■■■□□ 2.82
TNFRSF25-207ENST00000453260 SYNJ1O43426 1573 aa32.67■■■□□ 2.82
TNFRSF25-207ENST00000453260 PBRM1Q86U86 1689 aa32.65■■■□□ 2.82
TNFRSF25-207ENST00000453260 WRNQ14191 1432 aaPredicted RBP eCLIP32.64■■■□□ 2.82
TNFRSF25-207ENST00000453260 ARAP1Q96P48 1450 aa32.6■■■□□ 2.81
TNFRSF25-207ENST00000453260 CLASP1Q7Z460 1538 aa32.59■■■□□ 2.81
TNFRSF25-207ENST00000453260 ABCA5Q8WWZ7 1642 aa32.59■■■□□ 2.81
TNFRSF25-207ENST00000453260 TOP2BQ02880 1626 aa32.55■■■□□ 2.8
TNFRSF25-207ENST00000453260 BIVM-ERCC5R4GMW8 1640 aa32.54■■■□□ 2.8
TNFRSF25-207ENST00000453260 TRHP20396 242 aaPredicted RBP32.4■■■□□ 2.78
TNFRSF25-207ENST00000453260 GRIN2AQ12879 1464 aa32.36■■■□□ 2.77
TNFRSF25-207ENST00000453260 ADAMTS12P58397 1594 aa32.32■■■□□ 2.77
TNFRSF25-207ENST00000453260 FHAD1B1AJZ9 1412 aa32.32■■■□□ 2.76
TNFRSF25-207ENST00000453260 ERICH3Q5RHP9 1530 aa32.3■■■□□ 2.76
TNFRSF25-207ENST00000453260 NUP160Q12769 1436 aa32.24■■■□□ 2.75
TNFRSF25-207ENST00000453260 CEP170Q5SW79 1584 aa32.19■■■□□ 2.74
TNFRSF25-207ENST00000453260 ERCC6L2Q5T890 1561 aa32.07■■■□□ 2.72
TNFRSF25-207ENST00000453260 SHROOM2Q13796 1616 aa32.06■■■□□ 2.72
TNFRSF25-207ENST00000453260 JPH4Q96JJ6 628 aa32■■■□□ 2.71
TNFRSF25-207ENST00000453260 KIF27Q86VH2 1401 aa31.99■■■□□ 2.71
TNFRSF25-207ENST00000453260 PRG4Q92954 1404 aaPredicted RBP31.96■■■□□ 2.71
TNFRSF25-207ENST00000453260 IGF1RP08069 1367 aa31.94■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms