RNA–Protein interactions for RNA: ENST00000453056.5

VPS8-213, Transcript of VPS8, CORVET complex subunit, humanhuman

TSL 3

Gene VPS8, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8-213ENST00000453056 NISCHQ9Y2I1 1504 aa37.64■■■■□ 3.62
VPS8-213ENST00000453056 CCDC180Q9P1Z9 1646 aa33.57■■■□□ 2.96
VPS8-213ENST00000453056 ABCC9O60706 1549 aa32.76■■■□□ 2.83
VPS8-213ENST00000453056 RB1CC1Q8TDY2 1594 aa31.57■■■□□ 2.64
VPS8-213ENST00000453056 NACADO15069 1562 aa31.53■■■□□ 2.64
VPS8-213ENST00000453056 DCAF8L2P0C7V8 631 aa31.4■■■□□ 2.62
VPS8-213ENST00000453056 ZCCHC6Q5VYS8 1495 aaKnown RBP31.38■■■□□ 2.61
VPS8-213ENST00000453056 MYO15BQ96JP2 1530 aa31.32■■■□□ 2.6
VPS8-213ENST00000453056 DCAF1Q9Y4B6 1507 aa31.18■■■□□ 2.58
VPS8-213ENST00000453056 UNC13AQ9UPW8 1703 aa30.84■■■□□ 2.53
VPS8-213ENST00000453056 SCRIBQ14160 1630 aa30.58■■■□□ 2.49
VPS8-213ENST00000453056 PABPN1Q86U42 306 aaKnown RBP eCLIP30.54■■■□□ 2.48
VPS8-213ENST00000453056 BICRAQ9NZM4 1560 aa30.54■■■□□ 2.48
VPS8-213ENST00000453056 SHROOM4Q9ULL8 1493 aa30.34■■■□□ 2.45
VPS8-213ENST00000453056 DNAJC5BQ9UF47 199 aa29.94■■■□□ 2.38
VPS8-213ENST00000453056 EIF4G1Q04637 1599 aaKnown RBP29.77■■■□□ 2.36
VPS8-213ENST00000453056 CC2D2AQ9P2K1 1620 aa29.66■■■□□ 2.34
VPS8-213ENST00000453056 CECR2Q9BXF3 1484 aa29.46■■■□□ 2.31
VPS8-213ENST00000453056 SMARCA4P51532 1647 aa29.24■■■□□ 2.27
VPS8-213ENST00000453056 BAZ1AQ9NRL2 1556 aaPredicted RBP29.22■■■□□ 2.27
VPS8-213ENST00000453056 SMARCA2P51531 1590 aa29.09■■■□□ 2.25
VPS8-213ENST00000453056 ATAD2BQ9ULI0 1458 aa29.05■■■□□ 2.24
VPS8-213ENST00000453056 NCAPD3P42695 1498 aa29.03■■■□□ 2.24
VPS8-213ENST00000453056 MROH2BQ7Z745 1585 aa28.98■■■□□ 2.23
VPS8-213ENST00000453056 HMGXB3Q12766 1538 aa28.95■■■□□ 2.23
VPS8-213ENST00000453056 PEG3Q9GZU2 1588 aa28.95■■■□□ 2.22
VPS8-213ENST00000453056 BAZ1BQ9UIG0 1483 aaKnown RBP28.85■■■□□ 2.21
VPS8-213ENST00000453056 WIZO95785 1651 aa28.68■■■□□ 2.18
VPS8-213ENST00000453056 RSF1Q96T23 1441 aaPredicted RBP28.63■■■□□ 2.17
VPS8-213ENST00000453056 TOP2AP11388 1531 aaKnown RBP28.43■■■□□ 2.14
VPS8-213ENST00000453056 LAMC3Q9Y6N6 1575 aa28.33■■■□□ 2.12
VPS8-213ENST00000453056 ERCC6Q03468 1493 aa28.31■■■□□ 2.12
VPS8-213ENST00000453056 NESP48681 1621 aa28.31■■■□□ 2.12
VPS8-213ENST00000453056 CADPSQ9ULU8 1353 aa28.19■■■□□ 2.1
VPS8-213ENST00000453056 PDS5BQ9NTI5 1447 aa28.13■■■□□ 2.09
VPS8-213ENST00000453056 KIF21AQ7Z4S6 1674 aa28.05■■■□□ 2.08
VPS8-213ENST00000453056 CCDC88BA6NC98 1476 aa28.02■■■□□ 2.08
VPS8-213ENST00000453056 CFTRP13569 1480 aa28.02■■■□□ 2.08
VPS8-213ENST00000453056 CUX2O14529 1486 aa28.01■■■□□ 2.07
VPS8-213ENST00000453056 THOC2Q8NI27 1593 aaKnown RBP27.96■■■□□ 2.07
VPS8-213ENST00000453056 PRDM2Q13029 1718 aa27.93■■■□□ 2.06
VPS8-213ENST00000453056 CEP164Q9UPV0 1460 aa27.89■■■□□ 2.06
VPS8-213ENST00000453056 FANCD2Q9BXW9 1451 aa27.89■■■□□ 2.05
VPS8-213ENST00000453056 SUPT5HO00267 1087 aaKnown RBP27.88■■■□□ 2.05
VPS8-213ENST00000453056 MRC2Q9UBG0 1479 aa27.84■■■□□ 2.05
VPS8-213ENST00000453056 WDR62O43379 1518 aa27.75■■■□□ 2.03
VPS8-213ENST00000453056 URB2Q14146 1524 aaKnown RBP27.58■■■□□ 2.01
VPS8-213ENST00000453056 ABCC8Q09428 1581 aa27.48■■□□□ 1.99
VPS8-213ENST00000453056 DNMBPQ6XZF7 1577 aa27.44■■□□□ 1.98
VPS8-213ENST00000453056 TOPBP1Q92547 1522 aa27.44■■□□□ 1.98
VPS8-213ENST00000453056 DNAJC5Q9H3Z4 198 aa27.43■■□□□ 1.98
VPS8-213ENST00000453056 IFT140Q96RY7 1462 aa27.3■■□□□ 1.96
VPS8-213ENST00000453056 CUX1P39880 1505 aa27.21■■□□□ 1.95
VPS8-213ENST00000453056 POLA1P09884 1462 aaPredicted RBP27.2■■□□□ 1.95
VPS8-213ENST00000453056 FGD5Q6ZNL6 1462 aa27.13■■□□□ 1.93
VPS8-213ENST00000453056 TARBP1Q13395 1621 aaKnown RBP27.13■■□□□ 1.93
VPS8-213ENST00000453056 ZNF608Q9ULD9 1512 aaPredicted RBP27.11■■□□□ 1.93
VPS8-213ENST00000453056 EIF4G3O43432 1585 aaKnown RBP27.08■■□□□ 1.93
VPS8-213ENST00000453056 SOGA1O94964 1423 aa27.07■■□□□ 1.92
VPS8-213ENST00000453056 WRNQ14191 1432 aaPredicted RBP eCLIP27.05■■□□□ 1.92
VPS8-213ENST00000453056 RAD54L2Q9Y4B4 1467 aa27.04■■□□□ 1.92
VPS8-213ENST00000453056 WDR97A6NE52 1622 aa27.01■■□□□ 1.92
VPS8-213ENST00000453056 BIVM-ERCC5R4GMW8 1640 aa27.01■■□□□ 1.92
VPS8-213ENST00000453056 TOP2BQ02880 1626 aa27.01■■□□□ 1.91
VPS8-213ENST00000453056 SYNJ1O43426 1573 aa26.97■■□□□ 1.91
VPS8-213ENST00000453056 AQRO60306 1485 aaKnown RBP eCLIP26.94■■□□□ 1.9
VPS8-213ENST00000453056 TDRD9Q8NDG6 1382 aaKnown RBP26.89■■□□□ 1.9
VPS8-213ENST00000453056 ABCA10Q8WWZ4 1543 aa26.89■■□□□ 1.89
VPS8-213ENST00000453056 GRIN2BQ13224 1484 aa26.8■■□□□ 1.88
VPS8-213ENST00000453056 ABCA5Q8WWZ7 1642 aa26.79■■□□□ 1.88
VPS8-213ENST00000453056 GAPVD1Q14C86 1478 aa26.79■■□□□ 1.88
VPS8-213ENST00000453056 PBRM1Q86U86 1689 aa26.79■■□□□ 1.88
VPS8-213ENST00000453056 OSCARQ8IYS5 282 aa26.77■■□□□ 1.88
VPS8-213ENST00000453056 SNAPC4Q5SXM2 1469 aa26.76■■□□□ 1.87
VPS8-213ENST00000453056 MAGI1Q96QZ7 1491 aaPredicted RBP26.75■■□□□ 1.87
VPS8-213ENST00000453056 CHD1O14646 1710 aa26.75■■□□□ 1.87
VPS8-213ENST00000453056 FBLN2P98095 1184 aa26.65■■□□□ 1.86
VPS8-213ENST00000453056 SYNJ2O15056 1496 aa26.62■■□□□ 1.85
VPS8-213ENST00000453056 CHMP7Q8WUX9 453 aaPredicted RBP26.59■■□□□ 1.85
VPS8-213ENST00000453056 ERICH3Q5RHP9 1530 aa26.59■■□□□ 1.85
VPS8-213ENST00000453056 ADAMTS12P58397 1594 aa26.56■■□□□ 1.84
VPS8-213ENST00000453056 KIF27Q86VH2 1401 aa26.51■■□□□ 1.83
VPS8-213ENST00000453056 FHAD1B1AJZ9 1412 aa26.48■■□□□ 1.83
VPS8-213ENST00000453056 GRIN2AQ12879 1464 aa26.45■■□□□ 1.82
VPS8-213ENST00000453056 CLASP1Q7Z460 1538 aa26.42■■□□□ 1.82
VPS8-213ENST00000453056 RIMBP3CA6NJZ7 1639 aa26.39■■□□□ 1.81
VPS8-213ENST00000453056 RIMBP3BA6NNM3 1639 aa26.39■■□□□ 1.81
VPS8-213ENST00000453056 RIMBP3Q9UFD9 1639 aa26.39■■□□□ 1.81
VPS8-213ENST00000453056 ARHGEF11O15085 1522 aa26.38■■□□□ 1.81
VPS8-213ENST00000453056 CUL7Q14999 1698 aa26.38■■□□□ 1.81
VPS8-213ENST00000453056 TRIM41Q8WV44 630 aa26.36■■□□□ 1.81
VPS8-213ENST00000453056 NUP160Q12769 1436 aa26.32■■□□□ 1.8
VPS8-213ENST00000453056 IGF1RP08069 1367 aa26.32■■□□□ 1.8
VPS8-213ENST00000453056 CEP170Q5SW79 1584 aa26.3■■□□□ 1.8
VPS8-213ENST00000453056 CARMIL1Q5VZK9 1371 aa26.2■■□□□ 1.79
VPS8-213ENST00000453056 RUSC2Q8N2Y8 1516 aa26.16■■□□□ 1.78
VPS8-213ENST00000453056 ARAP1Q96P48 1450 aa26.16■■□□□ 1.78
VPS8-213ENST00000453056 SHROOM2Q13796 1616 aa26.14■■□□□ 1.77
VPS8-213ENST00000453056 CYB5RLQ6IPT4 315 aa26.08■■□□□ 1.77
VPS8-213ENST00000453056 RAPGEF2Q9Y4G8 1499 aa26.07■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 137.9 ms