RNA–Protein interactions for RNA: ENST00000451506.5

PTPRN-209, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 4

Gene PTPRN, Length 466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-209ENST00000451506 NISCHQ9Y2I1 1504 aa43.27■■■■■ 4.52
PTPRN-209ENST00000451506 ABCC9O60706 1549 aa39.06■■■■□ 3.84
PTPRN-209ENST00000451506 CCDC180Q9P1Z9 1646 aa38.89■■■■□ 3.82
PTPRN-209ENST00000451506 RB1CC1Q8TDY2 1594 aa37.09■■■■□ 3.53
PTPRN-209ENST00000451506 DNAJC5BQ9UF47 199 aa36.86■■■■□ 3.49
PTPRN-209ENST00000451506 NACADO15069 1562 aa36.82■■■■□ 3.48
PTPRN-209ENST00000451506 DCAF8L2P0C7V8 631 aa36.53■■■■□ 3.44
PTPRN-209ENST00000451506 PABPN1Q86U42 306 aaKnown RBP eCLIP36.34■■■■□ 3.41
PTPRN-209ENST00000451506 MYO15BQ96JP2 1530 aa36.28■■■■□ 3.4
PTPRN-209ENST00000451506 UNC13AQ9UPW8 1703 aa36.24■■■■□ 3.39
PTPRN-209ENST00000451506 BICRAQ9NZM4 1560 aa36.06■■■■□ 3.36
PTPRN-209ENST00000451506 ZCCHC6Q5VYS8 1495 aaKnown RBP35.82■■■■□ 3.32
PTPRN-209ENST00000451506 DCAF1Q9Y4B6 1507 aa35.74■■■■□ 3.31
PTPRN-209ENST00000451506 SHROOM4Q9ULL8 1493 aa35.55■■■■□ 3.28
PTPRN-209ENST00000451506 SCRIBQ14160 1630 aa35.4■■■■□ 3.26
PTPRN-209ENST00000451506 CC2D2AQ9P2K1 1620 aa35.28■■■■□ 3.24
PTPRN-209ENST00000451506 CECR2Q9BXF3 1484 aa35.22■■■■□ 3.23
PTPRN-209ENST00000451506 EIF4G1Q04637 1599 aaKnown RBP35.17■■■■□ 3.22
PTPRN-209ENST00000451506 NCAPD3P42695 1498 aa34.01■■■■□ 3.04
PTPRN-209ENST00000451506 DNAJC5Q9H3Z4 198 aa33.98■■■■□ 3.03
PTPRN-209ENST00000451506 ATAD2BQ9ULI0 1458 aa33.88■■■■□ 3.01
PTPRN-209ENST00000451506 SMARCA4P51532 1647 aa33.77■■■■□ 3
PTPRN-209ENST00000451506 CUX2O14529 1486 aa33.76■■■□□ 2.99
PTPRN-209ENST00000451506 SMARCA2P51531 1590 aa33.75■■■□□ 2.99
PTPRN-209ENST00000451506 HMGXB3Q12766 1538 aa33.73■■■□□ 2.99
PTPRN-209ENST00000451506 ERCC6Q03468 1493 aa33.71■■■□□ 2.99
PTPRN-209ENST00000451506 BAZ1AQ9NRL2 1556 aaPredicted RBP33.58■■■□□ 2.97
PTPRN-209ENST00000451506 NESP48681 1621 aa33.52■■■□□ 2.96
PTPRN-209ENST00000451506 BAZ1BQ9UIG0 1483 aaKnown RBP33.51■■■□□ 2.96
PTPRN-209ENST00000451506 PEG3Q9GZU2 1588 aa33.48■■■□□ 2.95
PTPRN-209ENST00000451506 MROH2BQ7Z745 1585 aa33.34■■■□□ 2.93
PTPRN-209ENST00000451506 LAMC3Q9Y6N6 1575 aa33.25■■■□□ 2.91
PTPRN-209ENST00000451506 THOC2Q8NI27 1593 aaKnown RBP33.22■■■□□ 2.91
PTPRN-209ENST00000451506 PDS5BQ9NTI5 1447 aa33.06■■■□□ 2.88
PTPRN-209ENST00000451506 KIF21AQ7Z4S6 1674 aa33.05■■■□□ 2.88
PTPRN-209ENST00000451506 CADPSQ9ULU8 1353 aa32.96■■■□□ 2.87
PTPRN-209ENST00000451506 WIZO95785 1651 aa32.9■■■□□ 2.86
PTPRN-209ENST00000451506 MRC2Q9UBG0 1479 aa32.8■■■□□ 2.84
PTPRN-209ENST00000451506 WDR62O43379 1518 aa32.73■■■□□ 2.83
PTPRN-209ENST00000451506 CEP164Q9UPV0 1460 aa32.61■■■□□ 2.81
PTPRN-209ENST00000451506 RSF1Q96T23 1441 aaPredicted RBP32.58■■■□□ 2.81
PTPRN-209ENST00000451506 FANCD2Q9BXW9 1451 aa32.57■■■□□ 2.8
PTPRN-209ENST00000451506 CFTRP13569 1480 aa32.55■■■□□ 2.8
PTPRN-209ENST00000451506 TOP2AP11388 1531 aaKnown RBP32.48■■■□□ 2.79
PTPRN-209ENST00000451506 TRIM41Q8WV44 630 aa32.35■■■□□ 2.77
PTPRN-209ENST00000451506 URB2Q14146 1524 aaKnown RBP32.33■■■□□ 2.77
PTPRN-209ENST00000451506 OSCARQ8IYS5 282 aa32.18■■■□□ 2.74
PTPRN-209ENST00000451506 PRDM2Q13029 1718 aa32.14■■■□□ 2.74
PTPRN-209ENST00000451506 CCDC88BA6NC98 1476 aa32.13■■■□□ 2.73
PTPRN-209ENST00000451506 IFT140Q96RY7 1462 aa31.97■■■□□ 2.71
PTPRN-209ENST00000451506 ZNF608Q9ULD9 1512 aaPredicted RBP31.95■■■□□ 2.71
PTPRN-209ENST00000451506 TOPBP1Q92547 1522 aa31.94■■■□□ 2.7
PTPRN-209ENST00000451506 ABCC8Q09428 1581 aa31.85■■■□□ 2.69
PTPRN-209ENST00000451506 DNMBPQ6XZF7 1577 aa31.8■■■□□ 2.68
PTPRN-209ENST00000451506 RIMBP3CA6NJZ7 1639 aa31.77■■■□□ 2.68
PTPRN-209ENST00000451506 RIMBP3BA6NNM3 1639 aa31.77■■■□□ 2.68
PTPRN-209ENST00000451506 RIMBP3Q9UFD9 1639 aa31.77■■■□□ 2.68
PTPRN-209ENST00000451506 EIF4G3O43432 1585 aaKnown RBP31.75■■■□□ 2.67
PTPRN-209ENST00000451506 TARBP1Q13395 1621 aaKnown RBP31.68■■■□□ 2.66
PTPRN-209ENST00000451506 ARHGEF11O15085 1522 aa31.67■■■□□ 2.66
PTPRN-209ENST00000451506 AQRO60306 1485 aaKnown RBP eCLIP31.64■■■□□ 2.66
PTPRN-209ENST00000451506 POLA1P09884 1462 aaPredicted RBP31.6■■■□□ 2.65
PTPRN-209ENST00000451506 CHD1O14646 1710 aa31.53■■■□□ 2.64
PTPRN-209ENST00000451506 RAD54L2Q9Y4B4 1467 aa31.49■■■□□ 2.63
PTPRN-209ENST00000451506 SOGA1O94964 1423 aa31.45■■■□□ 2.63
PTPRN-209ENST00000451506 CYB5RLQ6IPT4 315 aa31.43■■■□□ 2.62
PTPRN-209ENST00000451506 FBLN2P98095 1184 aa31.42■■■□□ 2.62
PTPRN-209ENST00000451506 TDRD9Q8NDG6 1382 aaKnown RBP31.42■■■□□ 2.62
PTPRN-209ENST00000451506 FGD5Q6ZNL6 1462 aa31.37■■■□□ 2.61
PTPRN-209ENST00000451506 ARAP1Q96P48 1450 aa31.36■■■□□ 2.61
PTPRN-209ENST00000451506 WDR97A6NE52 1622 aa31.33■■■□□ 2.61
PTPRN-209ENST00000451506 CUX1P39880 1505 aa31.33■■■□□ 2.61
PTPRN-209ENST00000451506 SNAPC4Q5SXM2 1469 aa31.3■■■□□ 2.6
PTPRN-209ENST00000451506 MAGI1Q96QZ7 1491 aaPredicted RBP31.22■■■□□ 2.59
PTPRN-209ENST00000451506 CLASP1Q7Z460 1538 aa31.22■■■□□ 2.59
PTPRN-209ENST00000451506 GRIN2BQ13224 1484 aa31.2■■■□□ 2.58
PTPRN-209ENST00000451506 CHMP7Q8WUX9 453 aaPredicted RBP31.18■■■□□ 2.58
PTPRN-209ENST00000451506 SYNJ1O43426 1573 aa31.14■■■□□ 2.58
PTPRN-209ENST00000451506 SYNJ2O15056 1496 aa31.12■■■□□ 2.57
PTPRN-209ENST00000451506 TRHP20396 242 aaPredicted RBP31.11■■■□□ 2.57
PTPRN-209ENST00000451506 GAPVD1Q14C86 1478 aa31.06■■■□□ 2.56
PTPRN-209ENST00000451506 PBRM1Q86U86 1689 aa31.03■■■□□ 2.56
PTPRN-209ENST00000451506 ABCA10Q8WWZ4 1543 aa31.02■■■□□ 2.56
PTPRN-209ENST00000451506 ABCA5Q8WWZ7 1642 aa30.98■■■□□ 2.55
PTPRN-209ENST00000451506 SUPT5HO00267 1087 aaKnown RBP30.94■■■□□ 2.54
PTPRN-209ENST00000451506 WRNQ14191 1432 aaPredicted RBP eCLIP30.84■■■□□ 2.53
PTPRN-209ENST00000451506 GRIN2AQ12879 1464 aa30.8■■■□□ 2.52
PTPRN-209ENST00000451506 TOP2BQ02880 1626 aa30.76■■■□□ 2.51
PTPRN-209ENST00000451506 BIVM-ERCC5R4GMW8 1640 aa30.76■■■□□ 2.51
PTPRN-209ENST00000451506 ADAMTS12P58397 1594 aa30.75■■■□□ 2.51
PTPRN-209ENST00000451506 NUP160Q12769 1436 aa30.73■■■□□ 2.51
PTPRN-209ENST00000451506 ERCC6L2Q5T890 1561 aa30.71■■■□□ 2.51
PTPRN-209ENST00000451506 CEP170Q5SW79 1584 aa30.71■■■□□ 2.51
PTPRN-209ENST00000451506 FHAD1B1AJZ9 1412 aa30.66■■■□□ 2.5
PTPRN-209ENST00000451506 ERICH3Q5RHP9 1530 aa30.62■■■□□ 2.49
PTPRN-209ENST00000451506 SHROOM2Q13796 1616 aa30.6■■■□□ 2.49
PTPRN-209ENST00000451506 PRG4Q92954 1404 aaPredicted RBP30.42■■■□□ 2.46
PTPRN-209ENST00000451506 JPH4Q96JJ6 628 aa30.39■■■□□ 2.46
PTPRN-209ENST00000451506 RUSC2Q8N2Y8 1516 aa30.33■■■□□ 2.45
PTPRN-209ENST00000451506 AEBP2Q6ZN18 517 aaPredicted RBP30.32■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms