RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 NISCHQ9Y2I1 1504 aa48.07■■■■■ 5.29
USP40-207ENST00000450940 CCDC180Q9P1Z9 1646 aa42.97■■■■■ 4.47
USP40-207ENST00000450940 ABCC9O60706 1549 aa42.39■■■■■ 4.38
USP40-207ENST00000450940 RB1CC1Q8TDY2 1594 aa40.63■■■■■ 4.09
USP40-207ENST00000450940 NACADO15069 1562 aa40.49■■■■■ 4.07
USP40-207ENST00000450940 DCAF8L2P0C7V8 631 aa40.21■■■■■ 4.03
USP40-207ENST00000450940 MYO15BQ96JP2 1530 aa40.16■■■■■ 4.02
USP40-207ENST00000450940 ZCCHC6Q5VYS8 1495 aaKnown RBP39.92■■■■□ 3.98
USP40-207ENST00000450940 DCAF1Q9Y4B6 1507 aa39.8■■■■□ 3.96
USP40-207ENST00000450940 UNC13AQ9UPW8 1703 aa39.76■■■■□ 3.96
USP40-207ENST00000450940 PABPN1Q86U42 306 aaKnown RBP eCLIP39.52■■■■□ 3.92
USP40-207ENST00000450940 BICRAQ9NZM4 1560 aa39.46■■■■□ 3.91
USP40-207ENST00000450940 DNAJC5BQ9UF47 199 aa39.4■■■■□ 3.9
USP40-207ENST00000450940 SCRIBQ14160 1630 aa39.07■■■■□ 3.84
USP40-207ENST00000450940 SHROOM4Q9ULL8 1493 aa39.01■■■■□ 3.84
USP40-207ENST00000450940 EIF4G1Q04637 1599 aaKnown RBP38.41■■■■□ 3.74
USP40-207ENST00000450940 CC2D2AQ9P2K1 1620 aa38.38■■■■□ 3.73
USP40-207ENST00000450940 CECR2Q9BXF3 1484 aa38.16■■■■□ 3.7
USP40-207ENST00000450940 SMARCA4P51532 1647 aa37.39■■■■□ 3.58
USP40-207ENST00000450940 NCAPD3P42695 1498 aa37.39■■■■□ 3.58
USP40-207ENST00000450940 ATAD2BQ9ULI0 1458 aa37.3■■■■□ 3.56
USP40-207ENST00000450940 BAZ1AQ9NRL2 1556 aaPredicted RBP37.27■■■■□ 3.56
USP40-207ENST00000450940 SMARCA2P51531 1590 aa37.23■■■■□ 3.55
USP40-207ENST00000450940 HMGXB3Q12766 1538 aa37.14■■■■□ 3.54
USP40-207ENST00000450940 PEG3Q9GZU2 1588 aa37.08■■■■□ 3.53
USP40-207ENST00000450940 MROH2BQ7Z745 1585 aa37.01■■■■□ 3.52
USP40-207ENST00000450940 BAZ1BQ9UIG0 1483 aaKnown RBP36.93■■■■□ 3.5
USP40-207ENST00000450940 WIZO95785 1651 aa36.58■■■■□ 3.45
USP40-207ENST00000450940 NESP48681 1621 aa36.57■■■■□ 3.44
USP40-207ENST00000450940 ERCC6Q03468 1493 aa36.55■■■■□ 3.44
USP40-207ENST00000450940 LAMC3Q9Y6N6 1575 aa36.45■■■■□ 3.43
USP40-207ENST00000450940 RSF1Q96T23 1441 aaPredicted RBP36.42■■■■□ 3.42
USP40-207ENST00000450940 CUX2O14529 1486 aa36.42■■■■□ 3.42
USP40-207ENST00000450940 CADPSQ9ULU8 1353 aa36.24■■■■□ 3.39
USP40-207ENST00000450940 PDS5BQ9NTI5 1447 aa36.2■■■■□ 3.39
USP40-207ENST00000450940 TOP2AP11388 1531 aaKnown RBP36.17■■■■□ 3.38
USP40-207ENST00000450940 THOC2Q8NI27 1593 aaKnown RBP36.15■■■■□ 3.38
USP40-207ENST00000450940 KIF21AQ7Z4S6 1674 aa36.15■■■■□ 3.38
USP40-207ENST00000450940 CFTRP13569 1480 aa35.93■■■■□ 3.34
USP40-207ENST00000450940 DNAJC5Q9H3Z4 198 aa35.87■■■■□ 3.33
USP40-207ENST00000450940 MRC2Q9UBG0 1479 aa35.85■■■■□ 3.33
USP40-207ENST00000450940 FANCD2Q9BXW9 1451 aa35.8■■■■□ 3.32
USP40-207ENST00000450940 CEP164Q9UPV0 1460 aa35.79■■■■□ 3.32
USP40-207ENST00000450940 WDR62O43379 1518 aa35.77■■■■□ 3.32
USP40-207ENST00000450940 CCDC88BA6NC98 1476 aa35.75■■■■□ 3.31
USP40-207ENST00000450940 PRDM2Q13029 1718 aa35.66■■■■□ 3.3
USP40-207ENST00000450940 URB2Q14146 1524 aaKnown RBP35.48■■■■□ 3.27
USP40-207ENST00000450940 ABCC8Q09428 1581 aa35.18■■■■□ 3.22
USP40-207ENST00000450940 TOPBP1Q92547 1522 aa35.18■■■■□ 3.22
USP40-207ENST00000450940 DNMBPQ6XZF7 1577 aa35.11■■■■□ 3.21
USP40-207ENST00000450940 IFT140Q96RY7 1462 aa35.08■■■■□ 3.21
USP40-207ENST00000450940 SUPT5HO00267 1087 aaKnown RBP35.04■■■■□ 3.2
USP40-207ENST00000450940 ZNF608Q9ULD9 1512 aaPredicted RBP34.95■■■■□ 3.19
USP40-207ENST00000450940 TARBP1Q13395 1621 aaKnown RBP34.88■■■■□ 3.17
USP40-207ENST00000450940 POLA1P09884 1462 aaPredicted RBP34.85■■■■□ 3.17
USP40-207ENST00000450940 OSCARQ8IYS5 282 aa34.81■■■■□ 3.16
USP40-207ENST00000450940 EIF4G3O43432 1585 aaKnown RBP34.79■■■■□ 3.16
USP40-207ENST00000450940 CUX1P39880 1505 aa34.75■■■■□ 3.15
USP40-207ENST00000450940 SOGA1O94964 1423 aa34.7■■■■□ 3.15
USP40-207ENST00000450940 AQRO60306 1485 aaKnown RBP eCLIP34.69■■■■□ 3.14
USP40-207ENST00000450940 FGD5Q6ZNL6 1462 aa34.68■■■■□ 3.14
USP40-207ENST00000450940 RAD54L2Q9Y4B4 1467 aa34.68■■■■□ 3.14
USP40-207ENST00000450940 WDR97A6NE52 1622 aa34.59■■■■□ 3.13
USP40-207ENST00000450940 TDRD9Q8NDG6 1382 aaKnown RBP34.54■■■■□ 3.12
USP40-207ENST00000450940 CHD1O14646 1710 aa34.46■■■■□ 3.11
USP40-207ENST00000450940 ABCA10Q8WWZ4 1543 aa34.36■■■■□ 3.09
USP40-207ENST00000450940 GRIN2BQ13224 1484 aa34.35■■■■□ 3.09
USP40-207ENST00000450940 BIVM-ERCC5R4GMW8 1640 aa34.35■■■■□ 3.09
USP40-207ENST00000450940 TRIM41Q8WV44 630 aa34.35■■■■□ 3.09
USP40-207ENST00000450940 TOP2BQ02880 1626 aa34.34■■■■□ 3.09
USP40-207ENST00000450940 SNAPC4Q5SXM2 1469 aa34.33■■■■□ 3.09
USP40-207ENST00000450940 WRNQ14191 1432 aaPredicted RBP eCLIP34.33■■■■□ 3.09
USP40-207ENST00000450940 MAGI1Q96QZ7 1491 aaPredicted RBP34.33■■■■□ 3.09
USP40-207ENST00000450940 RIMBP3CA6NJZ7 1639 aa34.3■■■■□ 3.08
USP40-207ENST00000450940 RIMBP3BA6NNM3 1639 aa34.3■■■■□ 3.08
USP40-207ENST00000450940 RIMBP3Q9UFD9 1639 aa34.3■■■■□ 3.08
USP40-207ENST00000450940 FBLN2P98095 1184 aa34.29■■■■□ 3.08
USP40-207ENST00000450940 SYNJ1O43426 1573 aa34.28■■■■□ 3.08
USP40-207ENST00000450940 GAPVD1Q14C86 1478 aa34.28■■■■□ 3.08
USP40-207ENST00000450940 ABCA5Q8WWZ7 1642 aa34.26■■■■□ 3.08
USP40-207ENST00000450940 PBRM1Q86U86 1689 aa34.25■■■■□ 3.07
USP40-207ENST00000450940 ARHGEF11O15085 1522 aa34.24■■■■□ 3.07
USP40-207ENST00000450940 SYNJ2O15056 1496 aa34.19■■■■□ 3.06
USP40-207ENST00000450940 CHMP7Q8WUX9 453 aaPredicted RBP34.17■■■■□ 3.06
USP40-207ENST00000450940 CLASP1Q7Z460 1538 aa34.1■■■■□ 3.05
USP40-207ENST00000450940 ADAMTS12P58397 1594 aa33.95■■■■□ 3.03
USP40-207ENST00000450940 ERICH3Q5RHP9 1530 aa33.94■■■■□ 3.02
USP40-207ENST00000450940 ARAP1Q96P48 1450 aa33.93■■■■□ 3.02
USP40-207ENST00000450940 CYB5RLQ6IPT4 315 aa33.91■■■■□ 3.02
USP40-207ENST00000450940 GRIN2AQ12879 1464 aa33.9■■■■□ 3.02
USP40-207ENST00000450940 FHAD1B1AJZ9 1412 aa33.88■■■■□ 3.01
USP40-207ENST00000450940 NUP160Q12769 1436 aa33.8■■■■□ 3
USP40-207ENST00000450940 CEP170Q5SW79 1584 aa33.77■■■■□ 3
USP40-207ENST00000450940 KIF27Q86VH2 1401 aa33.65■■■□□ 2.98
USP40-207ENST00000450940 SHROOM2Q13796 1616 aa33.63■■■□□ 2.97
USP40-207ENST00000450940 IGF1RP08069 1367 aa33.61■■■□□ 2.97
USP40-207ENST00000450940 ERCC6L2Q5T890 1561 aa33.56■■■□□ 2.96
USP40-207ENST00000450940 CUL7Q14999 1698 aa33.54■■■□□ 2.96
USP40-207ENST00000450940 RUSC2Q8N2Y8 1516 aa33.46■■■□□ 2.95
USP40-207ENST00000450940 JPH4Q96JJ6 628 aa33.43■■■□□ 2.94
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms