RNA–Protein interactions for RNA: ENST00000450931.5

PMS1-217, Transcript of PMS1 homolog 1, mismatch repair system component, humanhuman

TSL 2

Gene PMS1, Length 2,817 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMS1-217ENST00000450931 NISCHQ9Y2I1 1504 aa16.95■□□□□ 0.3
PMS1-217ENST00000450931 CCDC180Q9P1Z9 1646 aa15.41■□□□□ 0.06
PMS1-217ENST00000450931 ABCC9O60706 1549 aa15.38■□□□□ 0.05
PMS1-217ENST00000450931 RB1CC1Q8TDY2 1594 aa14.69□□□□□ -0.06
PMS1-217ENST00000450931 NACADO15069 1562 aa14.56□□□□□ -0.08
PMS1-217ENST00000450931 DNAJC5BQ9UF47 199 aa14.51□□□□□ -0.09
PMS1-217ENST00000450931 MYO15BQ96JP2 1530 aa14.36□□□□□ -0.11
PMS1-217ENST00000450931 UNC13AQ9UPW8 1703 aa14.33□□□□□ -0.12
PMS1-217ENST00000450931 BICRAQ9NZM4 1560 aa14.23□□□□□ -0.13
PMS1-217ENST00000450931 PABPN1Q86U42 306 aaKnown RBP eCLIP14.2□□□□□ -0.14
PMS1-217ENST00000450931 SHROOM4Q9ULL8 1493 aa14.17□□□□□ -0.14
PMS1-217ENST00000450931 DCAF8L2P0C7V8 631 aa14.14□□□□□ -0.15
PMS1-217ENST00000450931 DCAF1Q9Y4B6 1507 aa14.09□□□□□ -0.15
PMS1-217ENST00000450931 ZCCHC6Q5VYS8 1495 aaKnown RBP14.03□□□□□ -0.16
PMS1-217ENST00000450931 CC2D2AQ9P2K1 1620 aa13.95□□□□□ -0.18
PMS1-217ENST00000450931 CECR2Q9BXF3 1484 aa13.92□□□□□ -0.18
PMS1-217ENST00000450931 EIF4G1Q04637 1599 aaKnown RBP13.9□□□□□ -0.18
PMS1-217ENST00000450931 SCRIBQ14160 1630 aa13.87□□□□□ -0.19
PMS1-217ENST00000450931 DNAJC5Q9H3Z4 198 aa13.55□□□□□ -0.24
PMS1-217ENST00000450931 CUX2O14529 1486 aa13.47□□□□□ -0.25
PMS1-217ENST00000450931 NCAPD3P42695 1498 aa13.4□□□□□ -0.26
PMS1-217ENST00000450931 HMGXB3Q12766 1538 aa13.34□□□□□ -0.27
PMS1-217ENST00000450931 ERCC6Q03468 1493 aa13.33□□□□□ -0.28
PMS1-217ENST00000450931 SMARCA2P51531 1590 aa13.32□□□□□ -0.28
PMS1-217ENST00000450931 ATAD2BQ9ULI0 1458 aa13.3□□□□□ -0.28
PMS1-217ENST00000450931 SMARCA4P51532 1647 aa13.28□□□□□ -0.28
PMS1-217ENST00000450931 PEG3Q9GZU2 1588 aa13.21□□□□□ -0.29
PMS1-217ENST00000450931 BAZ1AQ9NRL2 1556 aaPredicted RBP13.2□□□□□ -0.3
PMS1-217ENST00000450931 THOC2Q8NI27 1593 aaKnown RBP13.18□□□□□ -0.3
PMS1-217ENST00000450931 LAMC3Q9Y6N6 1575 aa13.17□□□□□ -0.3
PMS1-217ENST00000450931 BAZ1BQ9UIG0 1483 aaKnown RBP13.17□□□□□ -0.3
PMS1-217ENST00000450931 NESP48681 1621 aa13.15□□□□□ -0.3
PMS1-217ENST00000450931 KIF21AQ7Z4S6 1674 aa13.06□□□□□ -0.32
PMS1-217ENST00000450931 PDS5BQ9NTI5 1447 aa13.05□□□□□ -0.32
PMS1-217ENST00000450931 MROH2BQ7Z745 1585 aa13□□□□□ -0.33
PMS1-217ENST00000450931 WDR62O43379 1518 aa12.96□□□□□ -0.33
PMS1-217ENST00000450931 MRC2Q9UBG0 1479 aa12.96□□□□□ -0.33
PMS1-217ENST00000450931 CADPSQ9ULU8 1353 aa12.94□□□□□ -0.34
PMS1-217ENST00000450931 CEP164Q9UPV0 1460 aa12.85□□□□□ -0.35
PMS1-217ENST00000450931 WIZO95785 1651 aa12.85□□□□□ -0.35
PMS1-217ENST00000450931 FANCD2Q9BXW9 1451 aa12.8□□□□□ -0.36
PMS1-217ENST00000450931 CFTRP13569 1480 aa12.79□□□□□ -0.36
PMS1-217ENST00000450931 TRIM41Q8WV44 630 aa12.77□□□□□ -0.36
PMS1-217ENST00000450931 PRDM2Q13029 1718 aa12.74□□□□□ -0.37
PMS1-217ENST00000450931 TOP2AP11388 1531 aaKnown RBP12.74□□□□□ -0.37
PMS1-217ENST00000450931 URB2Q14146 1524 aaKnown RBP12.7□□□□□ -0.38
PMS1-217ENST00000450931 OSCARQ8IYS5 282 aa12.7□□□□□ -0.38
PMS1-217ENST00000450931 RSF1Q96T23 1441 aaPredicted RBP12.66□□□□□ -0.38
PMS1-217ENST00000450931 IFT140Q96RY7 1462 aa12.62□□□□□ -0.39
PMS1-217ENST00000450931 RIMBP3CA6NJZ7 1639 aa12.62□□□□□ -0.39
PMS1-217ENST00000450931 RIMBP3BA6NNM3 1639 aa12.62□□□□□ -0.39
PMS1-217ENST00000450931 RIMBP3Q9UFD9 1639 aa12.62□□□□□ -0.39
PMS1-217ENST00000450931 ABCC8Q09428 1581 aa12.58□□□□□ -0.4
PMS1-217ENST00000450931 ARHGEF11O15085 1522 aa12.55□□□□□ -0.4
PMS1-217ENST00000450931 TOPBP1Q92547 1522 aa12.55□□□□□ -0.4
PMS1-217ENST00000450931 EIF4G3O43432 1585 aaKnown RBP12.54□□□□□ -0.4
PMS1-217ENST00000450931 ZNF608Q9ULD9 1512 aaPredicted RBP12.54□□□□□ -0.4
PMS1-217ENST00000450931 DNMBPQ6XZF7 1577 aa12.53□□□□□ -0.4
PMS1-217ENST00000450931 CCDC88BA6NC98 1476 aa12.52□□□□□ -0.4
PMS1-217ENST00000450931 TARBP1Q13395 1621 aaKnown RBP12.48□□□□□ -0.41
PMS1-217ENST00000450931 CHD1O14646 1710 aa12.47□□□□□ -0.41
PMS1-217ENST00000450931 WDR97A6NE52 1622 aa12.46□□□□□ -0.41
PMS1-217ENST00000450931 ARAP1Q96P48 1450 aa12.4□□□□□ -0.42
PMS1-217ENST00000450931 POLA1P09884 1462 aaPredicted RBP12.4□□□□□ -0.42
PMS1-217ENST00000450931 AQRO60306 1485 aaKnown RBP eCLIP12.37□□□□□ -0.431e-9■■■■□ 22.4
PMS1-217ENST00000450931 CLASP1Q7Z460 1538 aa12.36□□□□□ -0.43
PMS1-217ENST00000450931 CYB5RLQ6IPT4 315 aa12.34□□□□□ -0.43
PMS1-217ENST00000450931 SYNJ1O43426 1573 aa12.33□□□□□ -0.44
PMS1-217ENST00000450931 MAGI1Q96QZ7 1491 aaPredicted RBP12.33□□□□□ -0.44
PMS1-217ENST00000450931 SOGA1O94964 1423 aa12.31□□□□□ -0.44
PMS1-217ENST00000450931 SNAPC4Q5SXM2 1469 aa12.3□□□□□ -0.44
PMS1-217ENST00000450931 RAD54L2Q9Y4B4 1467 aa12.29□□□□□ -0.44
PMS1-217ENST00000450931 FGD5Q6ZNL6 1462 aa12.29□□□□□ -0.44
PMS1-217ENST00000450931 GRIN2BQ13224 1484 aa12.28□□□□□ -0.44
PMS1-217ENST00000450931 SYNJ2O15056 1496 aa12.27□□□□□ -0.45
PMS1-217ENST00000450931 TRHP20396 242 aaPredicted RBP12.26□□□□□ -0.45
PMS1-217ENST00000450931 FBLN2P98095 1184 aa12.26□□□□□ -0.45
PMS1-217ENST00000450931 TDRD9Q8NDG6 1382 aaKnown RBP12.25□□□□□ -0.45
PMS1-217ENST00000450931 PBRM1Q86U86 1689 aa12.25□□□□□ -0.45
PMS1-217ENST00000450931 CUX1P39880 1505 aa12.24□□□□□ -0.45
PMS1-217ENST00000450931 CHMP7Q8WUX9 453 aaPredicted RBP12.21□□□□□ -0.46
PMS1-217ENST00000450931 ABCA5Q8WWZ7 1642 aa12.2□□□□□ -0.46
PMS1-217ENST00000450931 ABCA10Q8WWZ4 1543 aa12.18□□□□□ -0.46
PMS1-217ENST00000450931 GAPVD1Q14C86 1478 aa12.18□□□□□ -0.46
PMS1-217ENST00000450931 ADAMTS12P58397 1594 aa12.12□□□□□ -0.47
PMS1-217ENST00000450931 GRIN2AQ12879 1464 aa12.11□□□□□ -0.47
PMS1-217ENST00000450931 SHROOM2Q13796 1616 aa12.11□□□□□ -0.47
PMS1-217ENST00000450931 NUP160Q12769 1436 aa12.09□□□□□ -0.47
PMS1-217ENST00000450931 BIVM-ERCC5R4GMW8 1640 aa12.08□□□□□ -0.48
PMS1-217ENST00000450931 CEP170Q5SW79 1584 aa12.08□□□□□ -0.48
PMS1-217ENST00000450931 AEBP2Q6ZN18 517 aaPredicted RBP12.07□□□□□ -0.48
PMS1-217ENST00000450931 WRNQ14191 1432 aaPredicted RBP eCLIP12.06□□□□□ -0.48
PMS1-217ENST00000450931 TOP2BQ02880 1626 aa12.05□□□□□ -0.48
PMS1-217ENST00000450931 ERCC6L2Q5T890 1561 aa12.05□□□□□ -0.48
PMS1-217ENST00000450931 ERICH3Q5RHP9 1530 aa12.05□□□□□ -0.48
PMS1-217ENST00000450931 FHAD1B1AJZ9 1412 aa12.04□□□□□ -0.48
PMS1-217ENST00000450931 KIF13AQ9H1H9 1805 aa12□□□□□ -0.49
PMS1-217ENST00000450931 RUSC2Q8N2Y8 1516 aa11.95□□□□□ -0.5
PMS1-217ENST00000450931 MAPKBP1O60336 1514 aa11.94□□□□□ -0.5
PMS1-217ENST00000450931 PRG4Q92954 1404 aaPredicted RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 107.7 ms