RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 NISCHQ9Y2I1 1504 aa35.01■■■■□ 3.19
COL3A1-203ENST00000450867 CCDC180Q9P1Z9 1646 aa31.2■■■□□ 2.58
COL3A1-203ENST00000450867 ABCC9O60706 1549 aa30.19■■■□□ 2.42
COL3A1-203ENST00000450867 NACADO15069 1562 aa29.22■■■□□ 2.27
COL3A1-203ENST00000450867 RB1CC1Q8TDY2 1594 aa29.22■■■□□ 2.27
COL3A1-203ENST00000450867 ZCCHC6Q5VYS8 1495 aaKnown RBP29.21■■■□□ 2.27
COL3A1-203ENST00000450867 MYO15BQ96JP2 1530 aa29.17■■■□□ 2.26
COL3A1-203ENST00000450867 DCAF1Q9Y4B6 1507 aa29.06■■■□□ 2.24
COL3A1-203ENST00000450867 DCAF8L2P0C7V8 631 aa28.9■■■□□ 2.22
COL3A1-203ENST00000450867 UNC13AQ9UPW8 1703 aa28.65■■■□□ 2.18
COL3A1-203ENST00000450867 BICRAQ9NZM4 1560 aa28.37■■■□□ 2.13
COL3A1-203ENST00000450867 SCRIBQ14160 1630 aa28.31■■■□□ 2.12
COL3A1-203ENST00000450867 PABPN1Q86U42 306 aaKnown RBP eCLIP28.14■■■□□ 2.1
COL3A1-203ENST00000450867 SHROOM4Q9ULL8 1493 aa28.14■■■□□ 2.09
COL3A1-203ENST00000450867 DNAJC5BQ9UF47 199 aa27.59■■■□□ 2.01
COL3A1-203ENST00000450867 EIF4G1Q04637 1599 aaKnown RBP27.56■■■□□ 2
COL3A1-203ENST00000450867 CC2D2AQ9P2K1 1620 aa27.41■■□□□ 1.98
COL3A1-203ENST00000450867 CECR2Q9BXF3 1484 aa27.19■■□□□ 1.94
COL3A1-203ENST00000450867 SMARCA4P51532 1647 aa27.16■■□□□ 1.94
COL3A1-203ENST00000450867 BAZ1AQ9NRL2 1556 aaPredicted RBP27.14■■□□□ 1.93
COL3A1-203ENST00000450867 PEG3Q9GZU2 1588 aa26.97■■□□□ 1.91
COL3A1-203ENST00000450867 SMARCA2P51531 1590 aa26.96■■□□□ 1.91
COL3A1-203ENST00000450867 MROH2BQ7Z745 1585 aa26.95■■□□□ 1.9
COL3A1-203ENST00000450867 NCAPD3P42695 1498 aa26.94■■□□□ 1.9
COL3A1-203ENST00000450867 ATAD2BQ9ULI0 1458 aa26.93■■□□□ 1.9
COL3A1-203ENST00000450867 HMGXB3Q12766 1538 aa26.87■■□□□ 1.89
COL3A1-203ENST00000450867 BAZ1BQ9UIG0 1483 aaKnown RBP26.7■■□□□ 1.87
COL3A1-203ENST00000450867 WIZO95785 1651 aa26.67■■□□□ 1.86
COL3A1-203ENST00000450867 RSF1Q96T23 1441 aaPredicted RBP26.66■■□□□ 1.86
COL3A1-203ENST00000450867 TOP2AP11388 1531 aaKnown RBP26.43■■□□□ 1.82
COL3A1-203ENST00000450867 LAMC3Q9Y6N6 1575 aa26.24■■□□□ 1.79
COL3A1-203ENST00000450867 NESP48681 1621 aa26.19■■□□□ 1.78
COL3A1-203ENST00000450867 CADPSQ9ULU8 1353 aa26.1■■□□□ 1.77
COL3A1-203ENST00000450867 CCDC88BA6NC98 1476 aa26.05■■□□□ 1.76
COL3A1-203ENST00000450867 CFTRP13569 1480 aa26.02■■□□□ 1.76
COL3A1-203ENST00000450867 ERCC6Q03468 1493 aa26■■□□□ 1.75
COL3A1-203ENST00000450867 KIF21AQ7Z4S6 1674 aa25.99■■□□□ 1.75
COL3A1-203ENST00000450867 PRDM2Q13029 1718 aa25.98■■□□□ 1.75
COL3A1-203ENST00000450867 PDS5BQ9NTI5 1447 aa25.97■■□□□ 1.75
COL3A1-203ENST00000450867 THOC2Q8NI27 1593 aaKnown RBP25.89■■□□□ 1.73
COL3A1-203ENST00000450867 SUPT5HO00267 1087 aaKnown RBP25.86■■□□□ 1.73
COL3A1-203ENST00000450867 CUX2O14529 1486 aa25.81■■□□□ 1.72
COL3A1-203ENST00000450867 FANCD2Q9BXW9 1451 aa25.8■■□□□ 1.72
COL3A1-203ENST00000450867 CEP164Q9UPV0 1460 aa25.78■■□□□ 1.72
COL3A1-203ENST00000450867 MRC2Q9UBG0 1479 aa25.73■■□□□ 1.71
COL3A1-203ENST00000450867 WDR62O43379 1518 aa25.69■■□□□ 1.7
COL3A1-203ENST00000450867 URB2Q14146 1524 aaKnown RBP25.57■■□□□ 1.68
COL3A1-203ENST00000450867 ABCC8Q09428 1581 aa25.47■■□□□ 1.67
COL3A1-203ENST00000450867 DNMBPQ6XZF7 1577 aa25.45■■□□□ 1.66
COL3A1-203ENST00000450867 TOPBP1Q92547 1522 aa25.43■■□□□ 1.66
COL3A1-203ENST00000450867 CUX1P39880 1505 aa25.28■■□□□ 1.64
COL3A1-203ENST00000450867 IFT140Q96RY7 1462 aa25.25■■□□□ 1.63
COL3A1-203ENST00000450867 POLA1P09884 1462 aaPredicted RBP25.22■■□□□ 1.63
COL3A1-203ENST00000450867 TARBP1Q13395 1621 aaKnown RBP25.21■■□□□ 1.63
COL3A1-203ENST00000450867 BIVM-ERCC5R4GMW8 1640 aa25.17■■□□□ 1.62
COL3A1-203ENST00000450867 FGD5Q6ZNL6 1462 aa25.15■■□□□ 1.62
COL3A1-203ENST00000450867 TOP2BQ02880 1626 aa25.14■■□□□ 1.61
COL3A1-203ENST00000450867 WRNQ14191 1432 aaPredicted RBP eCLIP25.12■■□□□ 1.61
COL3A1-203ENST00000450867 SYNJ1O43426 1573 aa25.1■■□□□ 1.61
COL3A1-203ENST00000450867 WDR97A6NE52 1622 aa25.08■■□□□ 1.61
COL3A1-203ENST00000450867 ZNF608Q9ULD9 1512 aaPredicted RBP25.08■■□□□ 1.61
COL3A1-203ENST00000450867 EIF4G3O43432 1585 aaKnown RBP25.06■■□□□ 1.6
COL3A1-203ENST00000450867 SOGA1O94964 1423 aa25.05■■□□□ 1.6
COL3A1-203ENST00000450867 RAD54L2Q9Y4B4 1467 aa25.05■■□□□ 1.6
COL3A1-203ENST00000450867 ABCA10Q8WWZ4 1543 aa24.96■■□□□ 1.59
COL3A1-203ENST00000450867 AQRO60306 1485 aaKnown RBP eCLIP24.92■■□□□ 1.58
COL3A1-203ENST00000450867 ABCA5Q8WWZ7 1642 aa24.9■■□□□ 1.58
COL3A1-203ENST00000450867 TDRD9Q8NDG6 1382 aaKnown RBP24.87■■□□□ 1.57
COL3A1-203ENST00000450867 PBRM1Q86U86 1689 aa24.85■■□□□ 1.57
COL3A1-203ENST00000450867 DNAJC5Q9H3Z4 198 aa24.8■■□□□ 1.56
COL3A1-203ENST00000450867 GRIN2BQ13224 1484 aa24.8■■□□□ 1.56
COL3A1-203ENST00000450867 GAPVD1Q14C86 1478 aa24.8■■□□□ 1.56
COL3A1-203ENST00000450867 MAGI1Q96QZ7 1491 aaPredicted RBP24.77■■□□□ 1.56
COL3A1-203ENST00000450867 CHD1O14646 1710 aa24.75■■□□□ 1.55
COL3A1-203ENST00000450867 SNAPC4Q5SXM2 1469 aa24.73■■□□□ 1.55
COL3A1-203ENST00000450867 ERICH3Q5RHP9 1530 aa24.68■■□□□ 1.54
COL3A1-203ENST00000450867 SYNJ2O15056 1496 aa24.64■■□□□ 1.54
COL3A1-203ENST00000450867 OSCARQ8IYS5 282 aa24.63■■□□□ 1.53
COL3A1-203ENST00000450867 ADAMTS12P58397 1594 aa24.63■■□□□ 1.53
COL3A1-203ENST00000450867 KIF27Q86VH2 1401 aa24.58■■□□□ 1.53
COL3A1-203ENST00000450867 FHAD1B1AJZ9 1412 aa24.53■■□□□ 1.52
COL3A1-203ENST00000450867 CUL7Q14999 1698 aa24.5■■□□□ 1.51
COL3A1-203ENST00000450867 GRIN2AQ12879 1464 aa24.5■■□□□ 1.51
COL3A1-203ENST00000450867 CHMP7Q8WUX9 453 aaPredicted RBP24.49■■□□□ 1.51
COL3A1-203ENST00000450867 CLASP1Q7Z460 1538 aa24.49■■□□□ 1.51
COL3A1-203ENST00000450867 FBLN2P98095 1184 aa24.47■■□□□ 1.51
COL3A1-203ENST00000450867 TRIM41Q8WV44 630 aa24.47■■□□□ 1.51
COL3A1-203ENST00000450867 IGF1RP08069 1367 aa24.46■■□□□ 1.51
COL3A1-203ENST00000450867 NUP160Q12769 1436 aa24.41■■□□□ 1.5
COL3A1-203ENST00000450867 CEP170Q5SW79 1584 aa24.39■■□□□ 1.5
COL3A1-203ENST00000450867 RUSC2Q8N2Y8 1516 aa24.36■■□□□ 1.49
COL3A1-203ENST00000450867 RIMBP3CA6NJZ7 1639 aa24.34■■□□□ 1.49
COL3A1-203ENST00000450867 RIMBP3BA6NNM3 1639 aa24.34■■□□□ 1.49
COL3A1-203ENST00000450867 RIMBP3Q9UFD9 1639 aa24.34■■□□□ 1.49
COL3A1-203ENST00000450867 ARHGEF11O15085 1522 aa24.32■■□□□ 1.48
COL3A1-203ENST00000450867 CARMIL1Q5VZK9 1371 aa24.29■■□□□ 1.48
COL3A1-203ENST00000450867 CHIC1Q5VXU3 224 aa24.29■■□□□ 1.48
COL3A1-203ENST00000450867 SHROOM2Q13796 1616 aa24.28■■□□□ 1.48
COL3A1-203ENST00000450867 EEA1Q15075 1411 aa24.23■■□□□ 1.47
COL3A1-203ENST00000450867 RAPGEF2Q9Y4G8 1499 aa24.2■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms