RNA–Protein interactions for RNA: ENST00000450385.5

SGCE-208, Transcript of sarcoglycan epsilon, human

TSL 3

Gene SGCE, Length 815 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SGCE-208	ENST00000450385	NISCH	Q9Y2I1	1504 aa		39.52	■■■■□ 3.92
SGCE-208	ENST00000450385	CCDC180	Q9P1Z9	1646 aa		35.38	■■■■□ 3.25
SGCE-208	ENST00000450385	ABCC9	O60706	1549 aa		34.8	■■■■□ 3.16
SGCE-208	ENST00000450385	RB1CC1	Q8TDY2	1594 aa		33.47	■■■□□ 2.95
SGCE-208	ENST00000450385	NACAD	O15069	1562 aa		33.38	■■■□□ 2.93
SGCE-208	ENST00000450385	MYO15B	Q96JP2	1530 aa		33.13	■■■□□ 2.89
SGCE-208	ENST00000450385	DCAF8L2	P0C7V8	631 aa		33.08	■■■□□ 2.89
SGCE-208	ENST00000450385	DCAF1	Q9Y4B6	1507 aa		32.81	■■■□□ 2.84
SGCE-208	ENST00000450385	ZCCHC6	Q5VYS8	1495 aa	Known RBP	32.8	■■■□□ 2.84
SGCE-208	ENST00000450385	UNC13A	Q9UPW8	1703 aa		32.63	■■■□□ 2.81
SGCE-208	ENST00000450385	PABPN1	Q86U42	306 aa	Known RBP eCLIP	32.44	■■■□□ 2.78
SGCE-208	ENST00000450385	BICRA	Q9NZM4	1560 aa		32.37	■■■□□ 2.77
SGCE-208	ENST00000450385	DNAJC5B	Q9UF47	199 aa		32.3	■■■□□ 2.76
SGCE-208	ENST00000450385	SHROOM4	Q9ULL8	1493 aa		32.23	■■■□□ 2.75
SGCE-208	ENST00000450385	SCRIB	Q14160	1630 aa		32.05	■■■□□ 2.72
SGCE-208	ENST00000450385	EIF4G1	Q04637	1599 aa	Known RBP	31.58	■■■□□ 2.65
SGCE-208	ENST00000450385	CC2D2A	Q9P2K1	1620 aa		31.53	■■■□□ 2.64
SGCE-208	ENST00000450385	CECR2	Q9BXF3	1484 aa		31.4	■■■□□ 2.62
SGCE-208	ENST00000450385	NCAPD3	P42695	1498 aa		30.79	■■■□□ 2.52
SGCE-208	ENST00000450385	SMARCA4	P51532	1647 aa		30.72	■■■□□ 2.51
SGCE-208	ENST00000450385	SMARCA2	P51531	1590 aa		30.69	■■■□□ 2.5
SGCE-208	ENST00000450385	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	30.69	■■■□□ 2.5
SGCE-208	ENST00000450385	ATAD2B	Q9ULI0	1458 aa		30.67	■■■□□ 2.5
SGCE-208	ENST00000450385	HMGXB3	Q12766	1538 aa		30.58	■■■□□ 2.49
SGCE-208	ENST00000450385	PEG3	Q9GZU2	1588 aa		30.52	■■■□□ 2.48
SGCE-208	ENST00000450385	BAZ1B	Q9UIG0	1483 aa	Known RBP	30.39	■■■□□ 2.46
SGCE-208	ENST00000450385	MROH2B	Q7Z745	1585 aa		30.36	■■■□□ 2.45
SGCE-208	ENST00000450385	ERCC6	Q03468	1493 aa		30.11	■■■□□ 2.41
SGCE-208	ENST00000450385	LAMC3	Q9Y6N6	1575 aa		30.04	■■■□□ 2.4
SGCE-208	ENST00000450385	CUX2	O14529	1486 aa		30.04	■■■□□ 2.4
SGCE-208	ENST00000450385	WIZ	O95785	1651 aa		30.01	■■■□□ 2.39
SGCE-208	ENST00000450385	NES	P48681	1621 aa		29.97	■■■□□ 2.39
SGCE-208	ENST00000450385	RSF1	Q96T23	1441 aa	Predicted RBP	29.92	■■■□□ 2.38
SGCE-208	ENST00000450385	PDS5B	Q9NTI5	1447 aa		29.88	■■■□□ 2.37
SGCE-208	ENST00000450385	CADPS	Q9ULU8	1353 aa		29.85	■■■□□ 2.37
SGCE-208	ENST00000450385	TOP2A	P11388	1531 aa	Known RBP	29.73	■■■□□ 2.35
SGCE-208	ENST00000450385	THOC2	Q8NI27	1593 aa	Known RBP	29.68	■■■□□ 2.34
SGCE-208	ENST00000450385	KIF21A	Q7Z4S6	1674 aa		29.66	■■■□□ 2.34
SGCE-208	ENST00000450385	CFTR	P13569	1480 aa		29.58	■■■□□ 2.33
SGCE-208	ENST00000450385	DNAJC5	Q9H3Z4	198 aa		29.57	■■■□□ 2.32
SGCE-208	ENST00000450385	MRC2	Q9UBG0	1479 aa		29.49	■■■□□ 2.31
SGCE-208	ENST00000450385	CEP164	Q9UPV0	1460 aa		29.46	■■■□□ 2.31
SGCE-208	ENST00000450385	FANCD2	Q9BXW9	1451 aa		29.44	■■■□□ 2.3
SGCE-208	ENST00000450385	WDR62	O43379	1518 aa		29.41	■■■□□ 2.3
SGCE-208	ENST00000450385	CCDC88B	A6NC98	1476 aa		29.37	■■■□□ 2.29
SGCE-208	ENST00000450385	PRDM2	Q13029	1718 aa		29.35	■■■□□ 2.29
SGCE-208	ENST00000450385	URB2	Q14146	1524 aa	Known RBP	29.13	■■■□□ 2.25
SGCE-208	ENST00000450385	ABCC8	Q09428	1581 aa		29.08	■■■□□ 2.25
SGCE-208	ENST00000450385	TOPBP1	Q92547	1522 aa		28.92	■■■□□ 2.22
SGCE-208	ENST00000450385	IFT140	Q96RY7	1462 aa		28.9	■■■□□ 2.22
SGCE-208	ENST00000450385	DNMBP	Q6XZF7	1577 aa		28.88	■■■□□ 2.21
SGCE-208	ENST00000450385	SUPT5H	O00267	1087 aa	Known RBP	28.77	■■■□□ 2.2
SGCE-208	ENST00000450385	OSCAR	Q8IYS5	282 aa		28.73	■■■□□ 2.19
SGCE-208	ENST00000450385	ZNF608	Q9ULD9	1512 aa	Predicted RBP	28.67	■■■□□ 2.18
SGCE-208	ENST00000450385	TARBP1	Q13395	1621 aa	Known RBP	28.65	■■■□□ 2.18
SGCE-208	ENST00000450385	POLA1	P09884	1462 aa	Predicted RBP	28.64	■■■□□ 2.17
SGCE-208	ENST00000450385	SOGA1	O94964	1423 aa		28.57	■■■□□ 2.16
SGCE-208	ENST00000450385	EIF4G3	O43432	1585 aa	Known RBP	28.57	■■■□□ 2.16
SGCE-208	ENST00000450385	WDR97	A6NE52	1622 aa		28.55	■■■□□ 2.16
SGCE-208	ENST00000450385	CUX1	P39880	1505 aa		28.52	■■■□□ 2.16
SGCE-208	ENST00000450385	AQR	O60306	1485 aa	Known RBP eCLIP	28.49	■■■□□ 2.15
SGCE-208	ENST00000450385	FGD5	Q6ZNL6	1462 aa		28.49	■■■□□ 2.15
SGCE-208	ENST00000450385	RAD54L2	Q9Y4B4	1467 aa		28.45	■■■□□ 2.14
SGCE-208	ENST00000450385	TDRD9	Q8NDG6	1382 aa	Known RBP	28.37	■■■□□ 2.13
SGCE-208	ENST00000450385	GRIN2B	Q13224	1484 aa		28.29	■■■□□ 2.12
SGCE-208	ENST00000450385	MAGI1	Q96QZ7	1491 aa	Predicted RBP	28.29	■■■□□ 2.12
SGCE-208	ENST00000450385	CHD1	O14646	1710 aa		28.29	■■■□□ 2.12
SGCE-208	ENST00000450385	ABCA10	Q8WWZ4	1543 aa		28.28	■■■□□ 2.12
SGCE-208	ENST00000450385	WRN	Q14191	1432 aa	Predicted RBP eCLIP	28.26	■■■□□ 2.12
SGCE-208	ENST00000450385	TRIM41	Q8WV44	630 aa		28.25	■■■□□ 2.11
SGCE-208	ENST00000450385	TOP2B	Q02880	1626 aa		28.24	■■■□□ 2.11
SGCE-208	ENST00000450385	BIVM-ERCC5	R4GMW8	1640 aa		28.23	■■■□□ 2.11
SGCE-208	ENST00000450385	FBLN2	P98095	1184 aa		28.23	■■■□□ 2.11
SGCE-208	ENST00000450385	GAPVD1	Q14C86	1478 aa		28.22	■■■□□ 2.11
SGCE-208	ENST00000450385	SNAPC4	Q5SXM2	1469 aa		28.21	■■■□□ 2.11
SGCE-208	ENST00000450385	CHMP7	Q8WUX9	453 aa	Predicted RBP	28.19	■■■□□ 2.1
SGCE-208	ENST00000450385	RIMBP3C	A6NJZ7	1639 aa		28.18	■■■□□ 2.1
SGCE-208	ENST00000450385	RIMBP3B	A6NNM3	1639 aa		28.18	■■■□□ 2.1
SGCE-208	ENST00000450385	RIMBP3	Q9UFD9	1639 aa		28.18	■■■□□ 2.1
SGCE-208	ENST00000450385	SYNJ2	O15056	1496 aa		28.15	■■■□□ 2.1
SGCE-208	ENST00000450385	ARHGEF11	O15085	1522 aa		28.15	■■■□□ 2.1
SGCE-208	ENST00000450385	ABCA5	Q8WWZ7	1642 aa		28.14	■■■□□ 2.1
SGCE-208	ENST00000450385	PBRM1	Q86U86	1689 aa		28.14	■■■□□ 2.1
SGCE-208	ENST00000450385	SYNJ1	O43426	1573 aa		28.1	■■■□□ 2.09
SGCE-208	ENST00000450385	CLASP1	Q7Z460	1538 aa		28.02	■■■□□ 2.08
SGCE-208	ENST00000450385	ERICH3	Q5RHP9	1530 aa		27.97	■■■□□ 2.07
SGCE-208	ENST00000450385	CYB5RL	Q6IPT4	315 aa		27.93	■■■□□ 2.06
SGCE-208	ENST00000450385	FHAD1	B1AJZ9	1412 aa		27.91	■■■□□ 2.06
SGCE-208	ENST00000450385	GRIN2A	Q12879	1464 aa		27.89	■■■□□ 2.05
SGCE-208	ENST00000450385	ADAMTS12	P58397	1594 aa		27.88	■■■□□ 2.05
SGCE-208	ENST00000450385	ARAP1	Q96P48	1450 aa		27.87	■■■□□ 2.05
SGCE-208	ENST00000450385	NUP160	Q12769	1436 aa		27.81	■■■□□ 2.04
SGCE-208	ENST00000450385	KIF27	Q86VH2	1401 aa		27.73	■■■□□ 2.03
SGCE-208	ENST00000450385	CEP170	Q5SW79	1584 aa		27.7	■■■□□ 2.03
SGCE-208	ENST00000450385	IGF1R	P08069	1367 aa		27.65	■■■□□ 2.02
SGCE-208	ENST00000450385	SHROOM2	Q13796	1616 aa		27.64	■■■□□ 2.02
SGCE-208	ENST00000450385	CUL7	Q14999	1698 aa		27.62	■■■□□ 2.01
SGCE-208	ENST00000450385	JPH4	Q96JJ6	628 aa		27.56	■■■□□ 2
SGCE-208	ENST00000450385	TRH	P20396	242 aa	Predicted RBP	27.49	■■□□□ 1.99
SGCE-208	ENST00000450385	ERCC6L2	Q5T890	1561 aa		27.48	■■□□□ 1.99

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