RNA–Protein interactions for RNA: ENST00000450000.5

CPSF7-208, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4

Gene CPSF7, Length 574 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-208ENST00000450000 NISCHQ9Y2I1 1504 aa53.93■■■■■ 6.22
CPSF7-208ENST00000450000 CCDC180Q9P1Z9 1646 aa48.16■■■■■ 5.3
CPSF7-208ENST00000450000 ABCC9O60706 1549 aa47.98■■■■■ 5.27
CPSF7-208ENST00000450000 RB1CC1Q8TDY2 1594 aa45.79■■■■■ 4.92
CPSF7-208ENST00000450000 DCAF8L2P0C7V8 631 aa45.73■■■■■ 4.91
CPSF7-208ENST00000450000 NACADO15069 1562 aa45.55■■■■■ 4.88
CPSF7-208ENST00000450000 MYO15BQ96JP2 1530 aa44.98■■■■■ 4.79
CPSF7-208ENST00000450000 PABPN1Q86U42 306 aaKnown RBP eCLIP44.81■■■■■ 4.76
CPSF7-208ENST00000450000 ZCCHC6Q5VYS8 1495 aaKnown RBP44.75■■■■■ 4.75
CPSF7-208ENST00000450000 DNAJC5BQ9UF47 199 aa44.59■■■■■ 4.73
CPSF7-208ENST00000450000 DCAF1Q9Y4B6 1507 aa44.54■■■■■ 4.72
CPSF7-208ENST00000450000 UNC13AQ9UPW8 1703 aa44.5■■■■■ 4.71
CPSF7-208ENST00000450000 BICRAQ9NZM4 1560 aa44.27■■■■■ 4.68
CPSF7-208ENST00000450000 SCRIBQ14160 1630 aa44.01■■■■■ 4.64
CPSF7-208ENST00000450000 SHROOM4Q9ULL8 1493 aa43.85■■■■■ 4.61
CPSF7-208ENST00000450000 EIF4G1Q04637 1599 aaKnown RBP43.27■■■■■ 4.52
CPSF7-208ENST00000450000 CC2D2AQ9P2K1 1620 aa43.26■■■■■ 4.52
CPSF7-208ENST00000450000 CECR2Q9BXF3 1484 aa43.19■■■■■ 4.5
CPSF7-208ENST00000450000 NCAPD3P42695 1498 aa42.04■■■■■ 4.32
CPSF7-208ENST00000450000 ATAD2BQ9ULI0 1458 aa41.97■■■■■ 4.31
CPSF7-208ENST00000450000 SMARCA4P51532 1647 aa41.96■■■■■ 4.31
CPSF7-208ENST00000450000 SMARCA2P51531 1590 aa41.91■■■■■ 4.3
CPSF7-208ENST00000450000 BAZ1AQ9NRL2 1556 aaPredicted RBP41.89■■■■■ 4.3
CPSF7-208ENST00000450000 HMGXB3Q12766 1538 aa41.72■■■■■ 4.27
CPSF7-208ENST00000450000 BAZ1BQ9UIG0 1483 aaKnown RBP41.66■■■■■ 4.26
CPSF7-208ENST00000450000 MROH2BQ7Z745 1585 aa41.54■■■■■ 4.24
CPSF7-208ENST00000450000 ERCC6Q03468 1493 aa41.51■■■■■ 4.24
CPSF7-208ENST00000450000 PEG3Q9GZU2 1588 aa41.5■■■■■ 4.23
CPSF7-208ENST00000450000 NESP48681 1621 aa41.24■■■■■ 4.19
CPSF7-208ENST00000450000 CUX2O14529 1486 aa41.19■■■■■ 4.18
CPSF7-208ENST00000450000 WIZO95785 1651 aa41.04■■■■■ 4.16
CPSF7-208ENST00000450000 LAMC3Q9Y6N6 1575 aa41.03■■■■■ 4.16
CPSF7-208ENST00000450000 PDS5BQ9NTI5 1447 aa40.93■■■■■ 4.14
CPSF7-208ENST00000450000 RSF1Q96T23 1441 aaPredicted RBP40.86■■■■■ 4.13
CPSF7-208ENST00000450000 CADPSQ9ULU8 1353 aa40.86■■■■■ 4.13
CPSF7-208ENST00000450000 DNAJC5Q9H3Z4 198 aa40.8■■■■■ 4.12
CPSF7-208ENST00000450000 THOC2Q8NI27 1593 aaKnown RBP40.66■■■■■ 4.1
CPSF7-208ENST00000450000 KIF21AQ7Z4S6 1674 aa40.64■■■■■ 4.1
CPSF7-208ENST00000450000 TOP2AP11388 1531 aaKnown RBP40.6■■■■■ 4.09
CPSF7-208ENST00000450000 MRC2Q9UBG0 1479 aa40.46■■■■■ 4.07
CPSF7-208ENST00000450000 CEP164Q9UPV0 1460 aa40.41■■■■■ 4.06
CPSF7-208ENST00000450000 CFTRP13569 1480 aa40.39■■■■■ 4.06
CPSF7-208ENST00000450000 FANCD2Q9BXW9 1451 aa40.38■■■■■ 4.05
CPSF7-208ENST00000450000 WDR62O43379 1518 aa40.26■■■■■ 4.04
CPSF7-208ENST00000450000 CCDC88BA6NC98 1476 aa40.16■■■■■ 4.02
CPSF7-208ENST00000450000 URB2Q14146 1524 aaKnown RBP39.93■■■■□ 3.98
CPSF7-208ENST00000450000 PRDM2Q13029 1718 aa39.87■■■■□ 3.97
CPSF7-208ENST00000450000 ABCC8Q09428 1581 aa39.64■■■■□ 3.94
CPSF7-208ENST00000450000 TOPBP1Q92547 1522 aa39.6■■■■□ 3.93
CPSF7-208ENST00000450000 IFT140Q96RY7 1462 aa39.58■■■■□ 3.93
CPSF7-208ENST00000450000 SUPT5HO00267 1087 aaKnown RBP39.58■■■■□ 3.93
CPSF7-208ENST00000450000 OSCARQ8IYS5 282 aa39.52■■■■□ 3.92
CPSF7-208ENST00000450000 DNMBPQ6XZF7 1577 aa39.48■■■■□ 3.91
CPSF7-208ENST00000450000 ZNF608Q9ULD9 1512 aaPredicted RBP39.4■■■■□ 3.9
CPSF7-208ENST00000450000 TRIM41Q8WV44 630 aa39.32■■■■□ 3.89
CPSF7-208ENST00000450000 POLA1P09884 1462 aaPredicted RBP39.22■■■■□ 3.87
CPSF7-208ENST00000450000 EIF4G3O43432 1585 aaKnown RBP39.16■■■■□ 3.86
CPSF7-208ENST00000450000 AQRO60306 1485 aaKnown RBP eCLIP39.16■■■■□ 3.863e-7■■■■■ 40.5
CPSF7-208ENST00000450000 SOGA1O94964 1423 aa39.15■■■■□ 3.86
CPSF7-208ENST00000450000 TARBP1Q13395 1621 aaKnown RBP39.12■■■■□ 3.85
CPSF7-208ENST00000450000 RAD54L2Q9Y4B4 1467 aa39.1■■■■□ 3.85
CPSF7-208ENST00000450000 FGD5Q6ZNL6 1462 aa39.05■■■■□ 3.84
CPSF7-208ENST00000450000 FBLN2P98095 1184 aa39.05■■■■□ 3.84
CPSF7-208ENST00000450000 TDRD9Q8NDG6 1382 aaKnown RBP39.02■■■■□ 3.84
CPSF7-208ENST00000450000 CUX1P39880 1505 aa39.01■■■■□ 3.84
CPSF7-208ENST00000450000 WDR97A6NE52 1622 aa38.82■■■■□ 3.81
CPSF7-208ENST00000450000 CHMP7Q8WUX9 453 aaPredicted RBP38.79■■■■□ 3.8
CPSF7-208ENST00000450000 CHD1O14646 1710 aa38.77■■■■□ 3.8
CPSF7-208ENST00000450000 SNAPC4Q5SXM2 1469 aa38.76■■■■□ 3.8
CPSF7-208ENST00000450000 GRIN2BQ13224 1484 aa38.74■■■■□ 3.79
CPSF7-208ENST00000450000 RIMBP3CA6NJZ7 1639 aa38.74■■■■□ 3.79
CPSF7-208ENST00000450000 RIMBP3BA6NNM3 1639 aa38.74■■■■□ 3.79
CPSF7-208ENST00000450000 RIMBP3Q9UFD9 1639 aa38.74■■■■□ 3.79
CPSF7-208ENST00000450000 ARHGEF11O15085 1522 aa38.7■■■■□ 3.79
CPSF7-208ENST00000450000 MAGI1Q96QZ7 1491 aaPredicted RBP38.67■■■■□ 3.78
CPSF7-208ENST00000450000 GAPVD1Q14C86 1478 aa38.65■■■■□ 3.78
CPSF7-208ENST00000450000 WRNQ14191 1432 aaPredicted RBP eCLIP38.64■■■■□ 3.78
CPSF7-208ENST00000450000 ABCA10Q8WWZ4 1543 aa38.61■■■■□ 3.77
CPSF7-208ENST00000450000 CYB5RLQ6IPT4 315 aa38.58■■■■□ 3.77
CPSF7-208ENST00000450000 SYNJ2O15056 1496 aa38.55■■■■□ 3.76
CPSF7-208ENST00000450000 SYNJ1O43426 1573 aa38.49■■■■□ 3.75
CPSF7-208ENST00000450000 TOP2BQ02880 1626 aa38.49■■■■□ 3.75
CPSF7-208ENST00000450000 PBRM1Q86U86 1689 aa38.46■■■■□ 3.75
CPSF7-208ENST00000450000 BIVM-ERCC5R4GMW8 1640 aa38.44■■■■□ 3.74
CPSF7-208ENST00000450000 ABCA5Q8WWZ7 1642 aa38.43■■■■□ 3.74
CPSF7-208ENST00000450000 CLASP1Q7Z460 1538 aa38.34■■■■□ 3.73
CPSF7-208ENST00000450000 ARAP1Q96P48 1450 aa38.33■■■■□ 3.73
CPSF7-208ENST00000450000 GRIN2AQ12879 1464 aa38.2■■■■□ 3.71
CPSF7-208ENST00000450000 FHAD1B1AJZ9 1412 aa38.19■■■■□ 3.7
CPSF7-208ENST00000450000 ADAMTS12P58397 1594 aa38.15■■■■□ 3.7
CPSF7-208ENST00000450000 ERICH3Q5RHP9 1530 aa38.14■■■■□ 3.7
CPSF7-208ENST00000450000 TRHP20396 242 aaPredicted RBP38.14■■■■□ 3.7
CPSF7-208ENST00000450000 NUP160Q12769 1436 aa38.02■■■■□ 3.68
CPSF7-208ENST00000450000 CEP170Q5SW79 1584 aa37.97■■■■□ 3.67
CPSF7-208ENST00000450000 KIF27Q86VH2 1401 aa37.92■■■■□ 3.66
CPSF7-208ENST00000450000 JPH4Q96JJ6 628 aa37.8■■■■□ 3.64
CPSF7-208ENST00000450000 IGF1RP08069 1367 aa37.78■■■■□ 3.64
CPSF7-208ENST00000450000 ERCC6L2Q5T890 1561 aa37.76■■■■□ 3.64
CPSF7-208ENST00000450000 PRG4Q92954 1404 aaPredicted RBP37.73■■■■□ 3.63
CPSF7-208ENST00000450000 SHROOM2Q13796 1616 aa37.72■■■■□ 3.63
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms