RNA–Protein interactions for RNA: ENST00000449530.2

LSP1P3-201, Transcript of LSP1 pseudogene 3, humanhuman

BASIC

Gene LSP1P3, Length 208 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSP1P3-201ENST00000449530 NISCHQ9Y2I1 1504 aa29.24■■■□□ 2.27
LSP1P3-201ENST00000449530 CCDC180Q9P1Z9 1646 aa26.12■■□□□ 1.77
LSP1P3-201ENST00000449530 ABCC9O60706 1549 aa25.59■■□□□ 1.69
LSP1P3-201ENST00000449530 RB1CC1Q8TDY2 1594 aa24.59■■□□□ 1.53
LSP1P3-201ENST00000449530 NACADO15069 1562 aa24.5■■□□□ 1.51
LSP1P3-201ENST00000449530 DNAJC5BQ9UF47 199 aa24.42■■□□□ 1.5
LSP1P3-201ENST00000449530 DCAF8L2P0C7V8 631 aa24.4■■□□□ 1.5
LSP1P3-201ENST00000449530 ZCCHC6Q5VYS8 1495 aaKnown RBP24.37■■□□□ 1.49
LSP1P3-201ENST00000449530 MYO15BQ96JP2 1530 aa24.3■■□□□ 1.48
LSP1P3-201ENST00000449530 DCAF1Q9Y4B6 1507 aa24.17■■□□□ 1.46
LSP1P3-201ENST00000449530 UNC13AQ9UPW8 1703 aa24.11■■□□□ 1.45
LSP1P3-201ENST00000449530 BICRAQ9NZM4 1560 aa23.85■■□□□ 1.41
LSP1P3-201ENST00000449530 SCRIBQ14160 1630 aa23.84■■□□□ 1.41
LSP1P3-201ENST00000449530 PABPN1Q86U42 306 aaKnown RBP eCLIP23.83■■□□□ 1.41
LSP1P3-201ENST00000449530 SHROOM4Q9ULL8 1493 aa23.56■■□□□ 1.36
LSP1P3-201ENST00000449530 EIF4G1Q04637 1599 aaKnown RBP23.23■■□□□ 1.31
LSP1P3-201ENST00000449530 CC2D2AQ9P2K1 1620 aa23.17■■□□□ 1.3
LSP1P3-201ENST00000449530 CECR2Q9BXF3 1484 aa22.98■■□□□ 1.27
LSP1P3-201ENST00000449530 DNAJC5Q9H3Z4 198 aa22.92■■□□□ 1.26
LSP1P3-201ENST00000449530 SMARCA4P51532 1647 aa22.76■■□□□ 1.23
LSP1P3-201ENST00000449530 BAZ1AQ9NRL2 1556 aaPredicted RBP22.69■■□□□ 1.22
LSP1P3-201ENST00000449530 ATAD2BQ9ULI0 1458 aa22.6■■□□□ 1.21
LSP1P3-201ENST00000449530 SMARCA2P51531 1590 aa22.59■■□□□ 1.21
LSP1P3-201ENST00000449530 NCAPD3P42695 1498 aa22.56■■□□□ 1.2
LSP1P3-201ENST00000449530 MROH2BQ7Z745 1585 aa22.55■■□□□ 1.2
LSP1P3-201ENST00000449530 HMGXB3Q12766 1538 aa22.52■■□□□ 1.2
LSP1P3-201ENST00000449530 PEG3Q9GZU2 1588 aa22.5■■□□□ 1.19
LSP1P3-201ENST00000449530 BAZ1BQ9UIG0 1483 aaKnown RBP22.44■■□□□ 1.18
LSP1P3-201ENST00000449530 WIZO95785 1651 aa22.34■■□□□ 1.17
LSP1P3-201ENST00000449530 RSF1Q96T23 1441 aaPredicted RBP22.21■■□□□ 1.15
LSP1P3-201ENST00000449530 CUX2O14529 1486 aa22.14■■□□□ 1.13
LSP1P3-201ENST00000449530 NESP48681 1621 aa22.12■■□□□ 1.13
LSP1P3-201ENST00000449530 TOP2AP11388 1531 aaKnown RBP22.09■■□□□ 1.13
LSP1P3-201ENST00000449530 ERCC6Q03468 1493 aa22.07■■□□□ 1.12
LSP1P3-201ENST00000449530 LAMC3Q9Y6N6 1575 aa22.05■■□□□ 1.12
LSP1P3-201ENST00000449530 KIF21AQ7Z4S6 1674 aa21.93■■□□□ 1.1
LSP1P3-201ENST00000449530 CADPSQ9ULU8 1353 aa21.89■■□□□ 1.1
LSP1P3-201ENST00000449530 THOC2Q8NI27 1593 aaKnown RBP21.87■■□□□ 1.09
LSP1P3-201ENST00000449530 PDS5BQ9NTI5 1447 aa21.85■■□□□ 1.09
LSP1P3-201ENST00000449530 CCDC88BA6NC98 1476 aa21.77■■□□□ 1.08
LSP1P3-201ENST00000449530 CFTRP13569 1480 aa21.77■■□□□ 1.08
LSP1P3-201ENST00000449530 PRDM2Q13029 1718 aa21.76■■□□□ 1.07
LSP1P3-201ENST00000449530 CEP164Q9UPV0 1460 aa21.71■■□□□ 1.07
LSP1P3-201ENST00000449530 FANCD2Q9BXW9 1451 aa21.7■■□□□ 1.06
LSP1P3-201ENST00000449530 TRIM41Q8WV44 630 aa21.69■■□□□ 1.06
LSP1P3-201ENST00000449530 MRC2Q9UBG0 1479 aa21.69■■□□□ 1.06
LSP1P3-201ENST00000449530 WDR62O43379 1518 aa21.64■■□□□ 1.05
LSP1P3-201ENST00000449530 SUPT5HO00267 1087 aaKnown RBP21.57■■□□□ 1.04
LSP1P3-201ENST00000449530 URB2Q14146 1524 aaKnown RBP21.5■■□□□ 1.03
LSP1P3-201ENST00000449530 TOPBP1Q92547 1522 aa21.35■■□□□ 1.01
LSP1P3-201ENST00000449530 DNMBPQ6XZF7 1577 aa21.35■■□□□ 1.01
LSP1P3-201ENST00000449530 ABCC8Q09428 1581 aa21.29■■□□□ 1
LSP1P3-201ENST00000449530 IFT140Q96RY7 1462 aa21.22■□□□□ 0.99
LSP1P3-201ENST00000449530 CUX1P39880 1505 aa21.18■□□□□ 0.98
LSP1P3-201ENST00000449530 POLA1P09884 1462 aaPredicted RBP21.17■□□□□ 0.98
LSP1P3-201ENST00000449530 TARBP1Q13395 1621 aaKnown RBP21.15■□□□□ 0.98
LSP1P3-201ENST00000449530 ZNF608Q9ULD9 1512 aaPredicted RBP21.15■□□□□ 0.98
LSP1P3-201ENST00000449530 EIF4G3O43432 1585 aaKnown RBP21.14■□□□□ 0.97
LSP1P3-201ENST00000449530 OSCARQ8IYS5 282 aa21.12■□□□□ 0.97
LSP1P3-201ENST00000449530 FGD5Q6ZNL6 1462 aa21.12■□□□□ 0.97
LSP1P3-201ENST00000449530 RAD54L2Q9Y4B4 1467 aa21.07■□□□□ 0.96
LSP1P3-201ENST00000449530 SOGA1O94964 1423 aa21.03■□□□□ 0.96
LSP1P3-201ENST00000449530 WDR97A6NE52 1622 aa21.02■□□□□ 0.96
LSP1P3-201ENST00000449530 BIVM-ERCC5R4GMW8 1640 aa21■□□□□ 0.95
LSP1P3-201ENST00000449530 AQRO60306 1485 aaKnown RBP eCLIP21■□□□□ 0.95
LSP1P3-201ENST00000449530 SYNJ1O43426 1573 aa20.99■□□□□ 0.95
LSP1P3-201ENST00000449530 TOP2BQ02880 1626 aa20.97■□□□□ 0.95
LSP1P3-201ENST00000449530 WRNQ14191 1432 aaPredicted RBP eCLIP20.96■□□□□ 0.95
LSP1P3-201ENST00000449530 TDRD9Q8NDG6 1382 aaKnown RBP20.93■□□□□ 0.94
LSP1P3-201ENST00000449530 CHD1O14646 1710 aa20.91■□□□□ 0.94
LSP1P3-201ENST00000449530 PBRM1Q86U86 1689 aa20.89■□□□□ 0.94
LSP1P3-201ENST00000449530 ABCA10Q8WWZ4 1543 aa20.88■□□□□ 0.93
LSP1P3-201ENST00000449530 ABCA5Q8WWZ7 1642 aa20.87■□□□□ 0.93
LSP1P3-201ENST00000449530 SNAPC4Q5SXM2 1469 aa20.85■□□□□ 0.93
LSP1P3-201ENST00000449530 GRIN2BQ13224 1484 aa20.82■□□□□ 0.92
LSP1P3-201ENST00000449530 GAPVD1Q14C86 1478 aa20.81■□□□□ 0.92
LSP1P3-201ENST00000449530 RIMBP3CA6NJZ7 1639 aa20.8■□□□□ 0.92
LSP1P3-201ENST00000449530 RIMBP3BA6NNM3 1639 aa20.8■□□□□ 0.92
LSP1P3-201ENST00000449530 RIMBP3Q9UFD9 1639 aa20.8■□□□□ 0.92
LSP1P3-201ENST00000449530 MAGI1Q96QZ7 1491 aaPredicted RBP20.79■□□□□ 0.92
LSP1P3-201ENST00000449530 FBLN2P98095 1184 aa20.74■□□□□ 0.91
LSP1P3-201ENST00000449530 SYNJ2O15056 1496 aa20.71■□□□□ 0.91
LSP1P3-201ENST00000449530 ADAMTS12P58397 1594 aa20.69■□□□□ 0.9
LSP1P3-201ENST00000449530 ARHGEF11O15085 1522 aa20.68■□□□□ 0.9
LSP1P3-201ENST00000449530 TRHP20396 242 aaPredicted RBP20.68■□□□□ 0.9
LSP1P3-201ENST00000449530 CYB5RLQ6IPT4 315 aa20.67■□□□□ 0.9
LSP1P3-201ENST00000449530 CHMP7Q8WUX9 453 aaPredicted RBP20.64■□□□□ 0.89
LSP1P3-201ENST00000449530 ERICH3Q5RHP9 1530 aa20.63■□□□□ 0.89
LSP1P3-201ENST00000449530 CLASP1Q7Z460 1538 aa20.62■□□□□ 0.89
LSP1P3-201ENST00000449530 GRIN2AQ12879 1464 aa20.57■□□□□ 0.88
LSP1P3-201ENST00000449530 AEBP2Q6ZN18 517 aaPredicted RBP20.57■□□□□ 0.88
LSP1P3-201ENST00000449530 FHAD1B1AJZ9 1412 aa20.55■□□□□ 0.88
LSP1P3-201ENST00000449530 KIF27Q86VH2 1401 aa20.53■□□□□ 0.88
LSP1P3-201ENST00000449530 CEP170Q5SW79 1584 aa20.51■□□□□ 0.87
LSP1P3-201ENST00000449530 CUL7Q14999 1698 aa20.49■□□□□ 0.87
LSP1P3-201ENST00000449530 NUP160Q12769 1436 aa20.46■□□□□ 0.87
LSP1P3-201ENST00000449530 ARAP1Q96P48 1450 aa20.44■□□□□ 0.86
LSP1P3-201ENST00000449530 IGF1RP08069 1367 aa20.4■□□□□ 0.86
LSP1P3-201ENST00000449530 RUSC2Q8N2Y8 1516 aa20.4■□□□□ 0.86
LSP1P3-201ENST00000449530 SHROOM2Q13796 1616 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms