RNA–Protein interactions for RNA: ENST00000449415.5

RFTN1-205, Transcript of raftlin, lipid raft linker 1, humanhuman

APPRIS ALT2 TSL 3

Gene RFTN1, Length 578 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFTN1-205ENST00000449415 NISCHQ9Y2I1 1504 aa43.86■■■■■ 4.61
RFTN1-205ENST00000449415 CCDC180Q9P1Z9 1646 aa39.07■■■■□ 3.84
RFTN1-205ENST00000449415 ABCC9O60706 1549 aa38.47■■■■□ 3.75
RFTN1-205ENST00000449415 RB1CC1Q8TDY2 1594 aa36.86■■■■□ 3.49
RFTN1-205ENST00000449415 DCAF8L2P0C7V8 631 aa36.85■■■■□ 3.49
RFTN1-205ENST00000449415 NACADO15069 1562 aa36.74■■■■□ 3.47
RFTN1-205ENST00000449415 ZCCHC6Q5VYS8 1495 aaKnown RBP36.49■■■■□ 3.43
RFTN1-205ENST00000449415 MYO15BQ96JP2 1530 aa36.39■■■■□ 3.42
RFTN1-205ENST00000449415 DCAF1Q9Y4B6 1507 aa36.2■■■■□ 3.39
RFTN1-205ENST00000449415 UNC13AQ9UPW8 1703 aa36.12■■■■□ 3.37
RFTN1-205ENST00000449415 PABPN1Q86U42 306 aaKnown RBP eCLIP35.93■■■■□ 3.34
RFTN1-205ENST00000449415 BICRAQ9NZM4 1560 aa35.76■■■■□ 3.32
RFTN1-205ENST00000449415 SCRIBQ14160 1630 aa35.72■■■■□ 3.31
RFTN1-205ENST00000449415 DNAJC5BQ9UF47 199 aa35.44■■■■□ 3.26
RFTN1-205ENST00000449415 SHROOM4Q9ULL8 1493 aa35.23■■■■□ 3.23
RFTN1-205ENST00000449415 EIF4G1Q04637 1599 aaKnown RBP34.83■■■■□ 3.17
RFTN1-205ENST00000449415 CC2D2AQ9P2K1 1620 aa34.76■■■■□ 3.15
RFTN1-205ENST00000449415 CECR2Q9BXF3 1484 aa34.53■■■■□ 3.12
RFTN1-205ENST00000449415 SMARCA4P51532 1647 aa34.1■■■■□ 3.05
RFTN1-205ENST00000449415 BAZ1AQ9NRL2 1556 aaPredicted RBP34■■■■□ 3.03
RFTN1-205ENST00000449415 ATAD2BQ9ULI0 1458 aa33.92■■■■□ 3.02
RFTN1-205ENST00000449415 NCAPD3P42695 1498 aa33.88■■■■□ 3.01
RFTN1-205ENST00000449415 SMARCA2P51531 1590 aa33.86■■■■□ 3.01
RFTN1-205ENST00000449415 MROH2BQ7Z745 1585 aa33.84■■■■□ 3.01
RFTN1-205ENST00000449415 HMGXB3Q12766 1538 aa33.72■■■□□ 2.99
RFTN1-205ENST00000449415 PEG3Q9GZU2 1588 aa33.69■■■□□ 2.98
RFTN1-205ENST00000449415 BAZ1BQ9UIG0 1483 aaKnown RBP33.66■■■□□ 2.98
RFTN1-205ENST00000449415 WIZO95785 1651 aa33.52■■■□□ 2.96
RFTN1-205ENST00000449415 RSF1Q96T23 1441 aaPredicted RBP33.36■■■□□ 2.93
RFTN1-205ENST00000449415 NESP48681 1621 aa33.24■■■□□ 2.91
RFTN1-205ENST00000449415 ERCC6Q03468 1493 aa33.14■■■□□ 2.9
RFTN1-205ENST00000449415 TOP2AP11388 1531 aaKnown RBP33.07■■■□□ 2.89
RFTN1-205ENST00000449415 LAMC3Q9Y6N6 1575 aa33.05■■■□□ 2.88
RFTN1-205ENST00000449415 CADPSQ9ULU8 1353 aa32.92■■■□□ 2.86
RFTN1-205ENST00000449415 KIF21AQ7Z4S6 1674 aa32.87■■■□□ 2.85
RFTN1-205ENST00000449415 PDS5BQ9NTI5 1447 aa32.83■■■□□ 2.85
RFTN1-205ENST00000449415 CUX2O14529 1486 aa32.77■■■□□ 2.84
RFTN1-205ENST00000449415 THOC2Q8NI27 1593 aaKnown RBP32.73■■■□□ 2.83
RFTN1-205ENST00000449415 CCDC88BA6NC98 1476 aa32.71■■■□□ 2.83
RFTN1-205ENST00000449415 CFTRP13569 1480 aa32.67■■■□□ 2.82
RFTN1-205ENST00000449415 FANCD2Q9BXW9 1451 aa32.57■■■□□ 2.8
RFTN1-205ENST00000449415 CEP164Q9UPV0 1460 aa32.54■■■□□ 2.8
RFTN1-205ENST00000449415 MRC2Q9UBG0 1479 aa32.53■■■□□ 2.8
RFTN1-205ENST00000449415 PRDM2Q13029 1718 aa32.51■■■□□ 2.8
RFTN1-205ENST00000449415 SUPT5HO00267 1087 aaKnown RBP32.51■■■□□ 2.79
RFTN1-205ENST00000449415 WDR62O43379 1518 aa32.41■■■□□ 2.78
RFTN1-205ENST00000449415 URB2Q14146 1524 aaKnown RBP32.26■■■□□ 2.76
RFTN1-205ENST00000449415 TOPBP1Q92547 1522 aa32.04■■■□□ 2.72
RFTN1-205ENST00000449415 DNAJC5Q9H3Z4 198 aa31.99■■■□□ 2.71
RFTN1-205ENST00000449415 DNMBPQ6XZF7 1577 aa31.98■■■□□ 2.71
RFTN1-205ENST00000449415 ABCC8Q09428 1581 aa31.96■■■□□ 2.71
RFTN1-205ENST00000449415 IFT140Q96RY7 1462 aa31.84■■■□□ 2.69
RFTN1-205ENST00000449415 ZNF608Q9ULD9 1512 aaPredicted RBP31.78■■■□□ 2.68
RFTN1-205ENST00000449415 POLA1P09884 1462 aaPredicted RBP31.75■■■□□ 2.67
RFTN1-205ENST00000449415 CUX1P39880 1505 aa31.75■■■□□ 2.67
RFTN1-205ENST00000449415 TARBP1Q13395 1621 aaKnown RBP31.71■■■□□ 2.67
RFTN1-205ENST00000449415 FGD5Q6ZNL6 1462 aa31.67■■■□□ 2.66
RFTN1-205ENST00000449415 RAD54L2Q9Y4B4 1467 aa31.66■■■□□ 2.66
RFTN1-205ENST00000449415 EIF4G3O43432 1585 aaKnown RBP31.64■■■□□ 2.66
RFTN1-205ENST00000449415 SOGA1O94964 1423 aa31.63■■■□□ 2.65
RFTN1-205ENST00000449415 AQRO60306 1485 aaKnown RBP eCLIP31.58■■■□□ 2.65
RFTN1-205ENST00000449415 TDRD9Q8NDG6 1382 aaKnown RBP31.5■■■□□ 2.63
RFTN1-205ENST00000449415 WRNQ14191 1432 aaPredicted RBP eCLIP31.47■■■□□ 2.63
RFTN1-205ENST00000449415 SYNJ1O43426 1573 aa31.44■■■□□ 2.62
RFTN1-205ENST00000449415 BIVM-ERCC5R4GMW8 1640 aa31.43■■■□□ 2.62
RFTN1-205ENST00000449415 WDR97A6NE52 1622 aa31.42■■■□□ 2.62
RFTN1-205ENST00000449415 OSCARQ8IYS5 282 aa31.42■■■□□ 2.62
RFTN1-205ENST00000449415 TOP2BQ02880 1626 aa31.42■■■□□ 2.62
RFTN1-205ENST00000449415 CHD1O14646 1710 aa31.33■■■□□ 2.61
RFTN1-205ENST00000449415 ABCA10Q8WWZ4 1543 aa31.31■■■□□ 2.6
RFTN1-205ENST00000449415 FBLN2P98095 1184 aa31.28■■■□□ 2.6
RFTN1-205ENST00000449415 SNAPC4Q5SXM2 1469 aa31.27■■■□□ 2.6
RFTN1-205ENST00000449415 PBRM1Q86U86 1689 aa31.26■■■□□ 2.6
RFTN1-205ENST00000449415 GRIN2BQ13224 1484 aa31.26■■■□□ 2.59
RFTN1-205ENST00000449415 GAPVD1Q14C86 1478 aa31.25■■■□□ 2.59
RFTN1-205ENST00000449415 ABCA5Q8WWZ7 1642 aa31.24■■■□□ 2.59
RFTN1-205ENST00000449415 MAGI1Q96QZ7 1491 aaPredicted RBP31.17■■■□□ 2.58
RFTN1-205ENST00000449415 CHMP7Q8WUX9 453 aaPredicted RBP31.11■■■□□ 2.57
RFTN1-205ENST00000449415 SYNJ2O15056 1496 aa31.07■■■□□ 2.56
RFTN1-205ENST00000449415 RIMBP3CA6NJZ7 1639 aa30.99■■■□□ 2.55
RFTN1-205ENST00000449415 RIMBP3BA6NNM3 1639 aa30.99■■■□□ 2.55
RFTN1-205ENST00000449415 RIMBP3Q9UFD9 1639 aa30.99■■■□□ 2.55
RFTN1-205ENST00000449415 TRIM41Q8WV44 630 aa30.99■■■□□ 2.55
RFTN1-205ENST00000449415 ADAMTS12P58397 1594 aa30.96■■■□□ 2.55
RFTN1-205ENST00000449415 ARHGEF11O15085 1522 aa30.93■■■□□ 2.54
RFTN1-205ENST00000449415 ERICH3Q5RHP9 1530 aa30.93■■■□□ 2.54
RFTN1-205ENST00000449415 CLASP1Q7Z460 1538 aa30.89■■■□□ 2.54
RFTN1-205ENST00000449415 FHAD1B1AJZ9 1412 aa30.86■■■□□ 2.53
RFTN1-205ENST00000449415 GRIN2AQ12879 1464 aa30.86■■■□□ 2.53
RFTN1-205ENST00000449415 KIF27Q86VH2 1401 aa30.81■■■□□ 2.52
RFTN1-205ENST00000449415 CEP170Q5SW79 1584 aa30.75■■■□□ 2.51
RFTN1-205ENST00000449415 IGF1RP08069 1367 aa30.7■■■□□ 2.51
RFTN1-205ENST00000449415 CYB5RLQ6IPT4 315 aa30.7■■■□□ 2.51
RFTN1-205ENST00000449415 NUP160Q12769 1436 aa30.7■■■□□ 2.5
RFTN1-205ENST00000449415 ARAP1Q96P48 1450 aa30.68■■■□□ 2.5
RFTN1-205ENST00000449415 CUL7Q14999 1698 aa30.65■■■□□ 2.5
RFTN1-205ENST00000449415 RUSC2Q8N2Y8 1516 aa30.57■■■□□ 2.48
RFTN1-205ENST00000449415 ERCC6L2Q5T890 1561 aa30.54■■■□□ 2.48
RFTN1-205ENST00000449415 CARMIL1Q5VZK9 1371 aa30.54■■■□□ 2.48
RFTN1-205ENST00000449415 SHROOM2Q13796 1616 aa30.51■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms