RNA–Protein interactions for RNA: ENST00000449086.5

LINC00954-202, long intergenic non-protein coding RNA 954, humanhuman

TSL 1 (best) BASIC

Gene LINC00954, Length 2,995 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00954-202ENST00000449086 NISCHQ9Y2I1 1504 aa18.09■□□□□ 0.49
LINC00954-202ENST00000449086 CCDC180Q9P1Z9 1646 aa16.07■□□□□ 0.16
LINC00954-202ENST00000449086 AEBP2Q6ZN18 517 aaPredicted RBP15.45■□□□□ 0.06
LINC00954-202ENST00000449086 ABCC9O60706 1549 aa15.33■□□□□ 0.04
LINC00954-202ENST00000449086 ZCCHC6Q5VYS8 1495 aaKnown RBP15.13■□□□□ 0.01
LINC00954-202ENST00000449086 MYO15BQ96JP2 1530 aa15.08■□□□□ 0
LINC00954-202ENST00000449086 DCAF1Q9Y4B6 1507 aa15.07■□□□□ 0
LINC00954-202ENST00000449086 NACADO15069 1562 aa15.03■□□□□ -0
LINC00954-202ENST00000449086 RB1CC1Q8TDY2 1594 aa14.97□□□□□ -0.01
LINC00954-202ENST00000449086 DCAF8L2P0C7V8 631 aa14.81□□□□□ -0.04
LINC00954-202ENST00000449086 UNC13AQ9UPW8 1703 aa14.59□□□□□ -0.07
LINC00954-202ENST00000449086 SCRIBQ14160 1630 aa14.54□□□□□ -0.08
LINC00954-202ENST00000449086 SHROOM4Q9ULL8 1493 aa14.49□□□□□ -0.09
LINC00954-202ENST00000449086 BICRAQ9NZM4 1560 aa14.47□□□□□ -0.09
LINC00954-202ENST00000449086 CHIC1Q5VXU3 224 aa14.44□□□□□ -0.1
LINC00954-202ENST00000449086 PABPN1Q86U42 306 aaKnown RBP eCLIP14.3□□□□□ -0.12
LINC00954-202ENST00000449086 EIF4G1Q04637 1599 aaKnown RBP14.07□□□□□ -0.16
LINC00954-202ENST00000449086 BAZ1AQ9NRL2 1556 aaPredicted RBP14.03□□□□□ -0.16
LINC00954-202ENST00000449086 SMARCA4P51532 1647 aa13.99□□□□□ -0.17
LINC00954-202ENST00000449086 CECR2Q9BXF3 1484 aa13.98□□□□□ -0.17
LINC00954-202ENST00000449086 CC2D2AQ9P2K1 1620 aa13.94□□□□□ -0.18
LINC00954-202ENST00000449086 PEG3Q9GZU2 1588 aa13.92□□□□□ -0.18
LINC00954-202ENST00000449086 MROH2BQ7Z745 1585 aa13.89□□□□□ -0.19
LINC00954-202ENST00000449086 SMARCA2P51531 1590 aa13.89□□□□□ -0.19
LINC00954-202ENST00000449086 ATAD2BQ9ULI0 1458 aa13.84□□□□□ -0.19
LINC00954-202ENST00000449086 NCAPD3P42695 1498 aa13.84□□□□□ -0.19
LINC00954-202ENST00000449086 HMGXB3Q12766 1538 aa13.82□□□□□ -0.2
LINC00954-202ENST00000449086 RSF1Q96T23 1441 aaPredicted RBP13.82□□□□□ -0.2
LINC00954-202ENST00000449086 DNAJC5BQ9UF47 199 aa13.81□□□□□ -0.2
LINC00954-202ENST00000449086 WIZO95785 1651 aa13.75□□□□□ -0.21
LINC00954-202ENST00000449086 BAZ1BQ9UIG0 1483 aaKnown RBP13.74□□□□□ -0.21
LINC00954-202ENST00000449086 TOP2AP11388 1531 aaKnown RBP13.69□□□□□ -0.22
LINC00954-202ENST00000449086 SUPT5HO00267 1087 aaKnown RBP13.6□□□□□ -0.23
LINC00954-202ENST00000449086 HRCP23327 699 aa13.5□□□□□ -0.25
LINC00954-202ENST00000449086 CCDC88BA6NC98 1476 aa13.47□□□□□ -0.25
LINC00954-202ENST00000449086 LAMC3Q9Y6N6 1575 aa13.45□□□□□ -0.26
LINC00954-202ENST00000449086 CADPSQ9ULU8 1353 aa13.41□□□□□ -0.26
LINC00954-202ENST00000449086 CFTRP13569 1480 aa13.4□□□□□ -0.26
LINC00954-202ENST00000449086 PCGF6Q9BYE7 350 aa13.39□□□□□ -0.27
LINC00954-202ENST00000449086 PPARGC1BQ86YN6 1023 aaKnown RBP13.37□□□□□ -0.27
LINC00954-202ENST00000449086 PRDM2Q13029 1718 aa13.37□□□□□ -0.27
LINC00954-202ENST00000449086 NESP48681 1621 aa13.32□□□□□ -0.28
LINC00954-202ENST00000449086 PDS5BQ9NTI5 1447 aa13.32□□□□□ -0.28
LINC00954-202ENST00000449086 FANCD2Q9BXW9 1451 aa13.24□□□□□ -0.29
LINC00954-202ENST00000449086 KIF21AQ7Z4S6 1674 aa13.24□□□□□ -0.29
LINC00954-202ENST00000449086 ERCC6Q03468 1493 aa13.23□□□□□ -0.29
LINC00954-202ENST00000449086 CEP164Q9UPV0 1460 aa13.23□□□□□ -0.29
LINC00954-202ENST00000449086 THOC2Q8NI27 1593 aaKnown RBP13.18□□□□□ -0.3
LINC00954-202ENST00000449086 MRC2Q9UBG0 1479 aa13.17□□□□□ -0.3
LINC00954-202ENST00000449086 SENP3Q9H4L4 574 aaPredicted RBP13.16□□□□□ -0.3
LINC00954-202ENST00000449086 ABCC8Q09428 1581 aa13.16□□□□□ -0.3
LINC00954-202ENST00000449086 WDR62O43379 1518 aa13.15□□□□□ -0.3
LINC00954-202ENST00000449086 DNMBPQ6XZF7 1577 aa13.11□□□□□ -0.31
LINC00954-202ENST00000449086 CUX2O14529 1486 aa13.11□□□□□ -0.31
LINC00954-202ENST00000449086 URB2Q14146 1524 aaKnown RBP13.09□□□□□ -0.31
LINC00954-202ENST00000449086 TOPBP1Q92547 1522 aa13.07□□□□□ -0.32
LINC00954-202ENST00000449086 BIVM-ERCC5R4GMW8 1640 aa13.04□□□□□ -0.32
LINC00954-202ENST00000449086 WRNQ14191 1432 aaPredicted RBP eCLIP13.04□□□□□ -0.32
LINC00954-202ENST00000449086 CUX1P39880 1505 aa13.04□□□□□ -0.32
LINC00954-202ENST00000449086 PHF23Q9BUL5 403 aaPredicted RBP13.03□□□□□ -0.32
LINC00954-202ENST00000449086 TOP2BQ02880 1626 aa13.03□□□□□ -0.32
LINC00954-202ENST00000449086 PELP1Q8IZL8 1130 aaKnown RBP12.99□□□□□ -0.33
LINC00954-202ENST00000449086 SYNJ1O43426 1573 aa12.98□□□□□ -0.33
LINC00954-202ENST00000449086 IFT140Q96RY7 1462 aa12.97□□□□□ -0.33
LINC00954-202ENST00000449086 POLA1P09884 1462 aaPredicted RBP12.96□□□□□ -0.33
LINC00954-202ENST00000449086 FGD5Q6ZNL6 1462 aa12.96□□□□□ -0.34
LINC00954-202ENST00000449086 WDR97A6NE52 1622 aa12.95□□□□□ -0.34
LINC00954-202ENST00000449086 TARBP1Q13395 1621 aaKnown RBP12.93□□□□□ -0.34
LINC00954-202ENST00000449086 LOC105371045A0A1W2PR82 267 aa12.92□□□□□ -0.34
LINC00954-202ENST00000449086 SOGA1O94964 1423 aa12.9□□□□□ -0.35
LINC00954-202ENST00000449086 ABCA10Q8WWZ4 1543 aa12.89□□□□□ -0.35
LINC00954-202ENST00000449086 RAD54L2Q9Y4B4 1467 aa12.85□□□□□ -0.35
LINC00954-202ENST00000449086 ABCA5Q8WWZ7 1642 aa12.82□□□□□ -0.36
LINC00954-202ENST00000449086 SCAF1Q9H7N4 1312 aaKnown RBP12.82□□□□□ -0.36
LINC00954-202ENST00000449086 EIF4G3O43432 1585 aaKnown RBP12.82□□□□□ -0.36
LINC00954-202ENST00000449086 TRIM26Q12899 539 aaPredicted RBP12.81□□□□□ -0.36
LINC00954-202ENST00000449086 TRIM41Q8WV44 630 aa12.81□□□□□ -0.36
LINC00954-202ENST00000449086 ZNF608Q9ULD9 1512 aaPredicted RBP12.8□□□□□ -0.36
LINC00954-202ENST00000449086 GAPVD1Q14C86 1478 aa12.77□□□□□ -0.37
LINC00954-202ENST00000449086 KIF27Q86VH2 1401 aa12.77□□□□□ -0.37
LINC00954-202ENST00000449086 GRIN2BQ13224 1484 aa12.76□□□□□ -0.37
LINC00954-202ENST00000449086 ERICH3Q5RHP9 1530 aa12.76□□□□□ -0.37
LINC00954-202ENST00000449086 PBRM1Q86U86 1689 aa12.76□□□□□ -0.37
LINC00954-202ENST00000449086 TDRD9Q8NDG6 1382 aaKnown RBP12.74□□□□□ -0.37
LINC00954-202ENST00000449086 AQRO60306 1485 aaKnown RBP eCLIP12.74□□□□□ -0.37
LINC00954-202ENST00000449086 MAGI1Q96QZ7 1491 aaPredicted RBP12.73□□□□□ -0.37
LINC00954-202ENST00000449086 EEA1Q15075 1411 aa12.73□□□□□ -0.37
LINC00954-202ENST00000449086 CUL7Q14999 1698 aa12.69□□□□□ -0.38
LINC00954-202ENST00000449086 ADAMTS12P58397 1594 aa12.67□□□□□ -0.38
LINC00954-202ENST00000449086 SNAPC4Q5SXM2 1469 aa12.67□□□□□ -0.38
LINC00954-202ENST00000449086 ZEB1P37275 1124 aaPredicted RBP12.67□□□□□ -0.38
LINC00954-202ENST00000449086 FHAD1B1AJZ9 1412 aa12.66□□□□□ -0.38
LINC00954-202ENST00000449086 SYNJ2O15056 1496 aa12.65□□□□□ -0.38
LINC00954-202ENST00000449086 IGF1RP08069 1367 aa12.65□□□□□ -0.38
LINC00954-202ENST00000449086 EHMT2Q96KQ7 1210 aa12.63□□□□□ -0.39
LINC00954-202ENST00000449086 RUSC2Q8N2Y8 1516 aa12.62□□□□□ -0.39
LINC00954-202ENST00000449086 FAM9AQ8IZU1 332 aaPredicted RBP12.6□□□□□ -0.39
LINC00954-202ENST00000449086 CHD1O14646 1710 aa12.6□□□□□ -0.39
LINC00954-202ENST00000449086 CARMIL1Q5VZK9 1371 aa12.59□□□□□ -0.39
LINC00954-202ENST00000449086 GRIN2AQ12879 1464 aa12.58□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms