RNA–Protein interactions for RNA: ENST00000448539.1

GTF3C3-206, Transcript of general transcription factor IIIC subunit 3, humanhuman

TSL 3

Gene GTF3C3, Length 796 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C3-206ENST00000448539 NISCHQ9Y2I1 1504 aa33.63■■■□□ 2.97
GTF3C3-206ENST00000448539 CCDC180Q9P1Z9 1646 aa29.81■■■□□ 2.36
GTF3C3-206ENST00000448539 ABCC9O60706 1549 aa29.45■■■□□ 2.3
GTF3C3-206ENST00000448539 DCAF8L2P0C7V8 631 aa28.2■■■□□ 2.1
GTF3C3-206ENST00000448539 RB1CC1Q8TDY2 1594 aa28.06■■■□□ 2.08
GTF3C3-206ENST00000448539 NACADO15069 1562 aa28.04■■■□□ 2.08
GTF3C3-206ENST00000448539 ZCCHC6Q5VYS8 1495 aaKnown RBP28.02■■■□□ 2.08
GTF3C3-206ENST00000448539 MYO15BQ96JP2 1530 aa27.89■■■□□ 2.06
GTF3C3-206ENST00000448539 DCAF1Q9Y4B6 1507 aa27.81■■■□□ 2.04
GTF3C3-206ENST00000448539 DNAJC5BQ9UF47 199 aa27.51■■□□□ 1.99
GTF3C3-206ENST00000448539 UNC13AQ9UPW8 1703 aa27.47■■□□□ 1.99
GTF3C3-206ENST00000448539 PABPN1Q86U42 306 aaKnown RBP eCLIP27.42■■□□□ 1.98
GTF3C3-206ENST00000448539 BICRAQ9NZM4 1560 aa27.26■■□□□ 1.96
GTF3C3-206ENST00000448539 SCRIBQ14160 1630 aa27.25■■□□□ 1.95
GTF3C3-206ENST00000448539 SHROOM4Q9ULL8 1493 aa26.92■■□□□ 1.9
GTF3C3-206ENST00000448539 CC2D2AQ9P2K1 1620 aa26.61■■□□□ 1.85
GTF3C3-206ENST00000448539 EIF4G1Q04637 1599 aaKnown RBP26.57■■□□□ 1.84
GTF3C3-206ENST00000448539 CECR2Q9BXF3 1484 aa26.49■■□□□ 1.83
GTF3C3-206ENST00000448539 BAZ1AQ9NRL2 1556 aaPredicted RBP26.07■■□□□ 1.76
GTF3C3-206ENST00000448539 SMARCA4P51532 1647 aa26.05■■□□□ 1.76
GTF3C3-206ENST00000448539 MROH2BQ7Z745 1585 aa25.91■■□□□ 1.74
GTF3C3-206ENST00000448539 ATAD2BQ9ULI0 1458 aa25.91■■□□□ 1.74
GTF3C3-206ENST00000448539 SMARCA2P51531 1590 aa25.9■■□□□ 1.74
GTF3C3-206ENST00000448539 NCAPD3P42695 1498 aa25.87■■□□□ 1.73
GTF3C3-206ENST00000448539 PEG3Q9GZU2 1588 aa25.77■■□□□ 1.72
GTF3C3-206ENST00000448539 HMGXB3Q12766 1538 aa25.74■■□□□ 1.71
GTF3C3-206ENST00000448539 BAZ1BQ9UIG0 1483 aaKnown RBP25.73■■□□□ 1.71
GTF3C3-206ENST00000448539 RSF1Q96T23 1441 aaPredicted RBP25.68■■□□□ 1.7
GTF3C3-206ENST00000448539 WIZO95785 1651 aa25.62■■□□□ 1.69
GTF3C3-206ENST00000448539 ERCC6Q03468 1493 aa25.39■■□□□ 1.65
GTF3C3-206ENST00000448539 TOP2AP11388 1531 aaKnown RBP25.38■■□□□ 1.65
GTF3C3-206ENST00000448539 NESP48681 1621 aa25.34■■□□□ 1.65
GTF3C3-206ENST00000448539 CUX2O14529 1486 aa25.3■■□□□ 1.64
GTF3C3-206ENST00000448539 SUPT5HO00267 1087 aaKnown RBP25.22■■□□□ 1.63
GTF3C3-206ENST00000448539 LAMC3Q9Y6N6 1575 aa25.17■■□□□ 1.62
GTF3C3-206ENST00000448539 CADPSQ9ULU8 1353 aa25.17■■□□□ 1.62
GTF3C3-206ENST00000448539 DNAJC5Q9H3Z4 198 aa25.14■■□□□ 1.62
GTF3C3-206ENST00000448539 CCDC88BA6NC98 1476 aa25.09■■□□□ 1.61
GTF3C3-206ENST00000448539 PDS5BQ9NTI5 1447 aa25.06■■□□□ 1.6
GTF3C3-206ENST00000448539 THOC2Q8NI27 1593 aaKnown RBP25.05■■□□□ 1.6
GTF3C3-206ENST00000448539 KIF21AQ7Z4S6 1674 aa25.02■■□□□ 1.6
GTF3C3-206ENST00000448539 CFTRP13569 1480 aa25■■□□□ 1.59
GTF3C3-206ENST00000448539 FANCD2Q9BXW9 1451 aa24.86■■□□□ 1.57
GTF3C3-206ENST00000448539 CEP164Q9UPV0 1460 aa24.83■■□□□ 1.57
GTF3C3-206ENST00000448539 MRC2Q9UBG0 1479 aa24.78■■□□□ 1.56
GTF3C3-206ENST00000448539 PRDM2Q13029 1718 aa24.75■■□□□ 1.55
GTF3C3-206ENST00000448539 WDR62O43379 1518 aa24.72■■□□□ 1.55
GTF3C3-206ENST00000448539 AEBP2Q6ZN18 517 aaPredicted RBP24.66■■□□□ 1.54
GTF3C3-206ENST00000448539 URB2Q14146 1524 aaKnown RBP24.57■■□□□ 1.52
GTF3C3-206ENST00000448539 ABCC8Q09428 1581 aa24.5■■□□□ 1.51
GTF3C3-206ENST00000448539 TOPBP1Q92547 1522 aa24.46■■□□□ 1.51
GTF3C3-206ENST00000448539 DNMBPQ6XZF7 1577 aa24.43■■□□□ 1.5
GTF3C3-206ENST00000448539 IFT140Q96RY7 1462 aa24.31■■□□□ 1.48
GTF3C3-206ENST00000448539 CUX1P39880 1505 aa24.3■■□□□ 1.48
GTF3C3-206ENST00000448539 POLA1P09884 1462 aaPredicted RBP24.26■■□□□ 1.47
GTF3C3-206ENST00000448539 WRNQ14191 1432 aaPredicted RBP eCLIP24.24■■□□□ 1.47
GTF3C3-206ENST00000448539 FGD5Q6ZNL6 1462 aa24.22■■□□□ 1.47
GTF3C3-206ENST00000448539 SOGA1O94964 1423 aa24.21■■□□□ 1.47
GTF3C3-206ENST00000448539 ZNF608Q9ULD9 1512 aaPredicted RBP24.18■■□□□ 1.46
GTF3C3-206ENST00000448539 RAD54L2Q9Y4B4 1467 aa24.16■■□□□ 1.46
GTF3C3-206ENST00000448539 OSCARQ8IYS5 282 aa24.15■■□□□ 1.46
GTF3C3-206ENST00000448539 TARBP1Q13395 1621 aaKnown RBP24.13■■□□□ 1.45
GTF3C3-206ENST00000448539 CHIC1Q5VXU3 224 aa24.12■■□□□ 1.45
GTF3C3-206ENST00000448539 TOP2BQ02880 1626 aa24.12■■□□□ 1.45
GTF3C3-206ENST00000448539 TRIM41Q8WV44 630 aa24.11■■□□□ 1.45
GTF3C3-206ENST00000448539 SYNJ1O43426 1573 aa24.11■■□□□ 1.45
GTF3C3-206ENST00000448539 BIVM-ERCC5R4GMW8 1640 aa24.1■■□□□ 1.45
GTF3C3-206ENST00000448539 EIF4G3O43432 1585 aaKnown RBP24.06■■□□□ 1.44
GTF3C3-206ENST00000448539 AQRO60306 1485 aaKnown RBP eCLIP24.06■■□□□ 1.44
GTF3C3-206ENST00000448539 TDRD9Q8NDG6 1382 aaKnown RBP24.05■■□□□ 1.44
GTF3C3-206ENST00000448539 ABCA10Q8WWZ4 1543 aa24■■□□□ 1.43
GTF3C3-206ENST00000448539 WDR97A6NE52 1622 aa23.99■■□□□ 1.43
GTF3C3-206ENST00000448539 GAPVD1Q14C86 1478 aa23.92■■□□□ 1.42
GTF3C3-206ENST00000448539 GRIN2BQ13224 1484 aa23.9■■□□□ 1.42
GTF3C3-206ENST00000448539 RIMBP3CA6NJZ7 1639 aa23.87■■□□□ 1.41
GTF3C3-206ENST00000448539 RIMBP3BA6NNM3 1639 aa23.87■■□□□ 1.41
GTF3C3-206ENST00000448539 RIMBP3Q9UFD9 1639 aa23.87■■□□□ 1.41
GTF3C3-206ENST00000448539 CHD1O14646 1710 aa23.86■■□□□ 1.41
GTF3C3-206ENST00000448539 ABCA5Q8WWZ7 1642 aa23.85■■□□□ 1.41
GTF3C3-206ENST00000448539 SNAPC4Q5SXM2 1469 aa23.84■■□□□ 1.41
GTF3C3-206ENST00000448539 FBLN2P98095 1184 aa23.84■■□□□ 1.41
GTF3C3-206ENST00000448539 MAGI1Q96QZ7 1491 aaPredicted RBP23.81■■□□□ 1.4
GTF3C3-206ENST00000448539 PBRM1Q86U86 1689 aa23.79■■□□□ 1.4
GTF3C3-206ENST00000448539 ARHGEF11O15085 1522 aa23.79■■□□□ 1.4
GTF3C3-206ENST00000448539 CHMP7Q8WUX9 453 aaPredicted RBP23.78■■□□□ 1.4
GTF3C3-206ENST00000448539 KIF27Q86VH2 1401 aa23.75■■□□□ 1.39
GTF3C3-206ENST00000448539 SYNJ2O15056 1496 aa23.72■■□□□ 1.39
GTF3C3-206ENST00000448539 ERICH3Q5RHP9 1530 aa23.71■■□□□ 1.39
GTF3C3-206ENST00000448539 FHAD1B1AJZ9 1412 aa23.65■■□□□ 1.38
GTF3C3-206ENST00000448539 ADAMTS12P58397 1594 aa23.63■■□□□ 1.37
GTF3C3-206ENST00000448539 IGF1RP08069 1367 aa23.61■■□□□ 1.37
GTF3C3-206ENST00000448539 CYB5RLQ6IPT4 315 aa23.6■■□□□ 1.37
GTF3C3-206ENST00000448539 CLASP1Q7Z460 1538 aa23.58■■□□□ 1.36
GTF3C3-206ENST00000448539 ARAP1Q96P48 1450 aa23.57■■□□□ 1.36
GTF3C3-206ENST00000448539 GRIN2AQ12879 1464 aa23.56■■□□□ 1.36
GTF3C3-206ENST00000448539 CUL7Q14999 1698 aa23.51■■□□□ 1.35
GTF3C3-206ENST00000448539 RUSC2Q8N2Y8 1516 aa23.5■■□□□ 1.35
GTF3C3-206ENST00000448539 CARMIL1Q5VZK9 1371 aa23.5■■□□□ 1.35
GTF3C3-206ENST00000448539 NUP160Q12769 1436 aa23.44■■□□□ 1.34
GTF3C3-206ENST00000448539 CEP170Q5SW79 1584 aa23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 141.6 ms